Experiment set10S183 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 2mM Thymine

200 most important genes:

  gene name fitness t score description  
MMP_RS01500 -8.7 -2.5 CBS domain-containing protein compare
MMP_RS04710 -7.3 -2.1 hypothetical protein compare
MMP_RS01325 -6.9 -2.2 dihydroneopterin aldolase family protein compare
MMP_RS07845 -6.5 -2.5 LL-diaminopimelate aminotransferase compare
MMP_RS07435 -6.3 -2.0 GMP synthase subunit A compare
MMP_RS08715 -6.3 -2.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07390 -6.2 -2.5 cell division protein FtsZ compare
MMP_RS02355 -6.1 -3.1 30S ribosomal protein S27ae compare
MMP_RS03435 -6.0 -1.9 ketol-acid reductoisomerase compare
MMP_RS08165 -5.8 -1.5 phosphoglycerate dehydrogenase compare
MMP_RS03445 -5.7 -0.9 methanogenesis marker 17 protein compare
MMP_RS03315 -5.5 -1.5 ferrous iron transport protein A compare
MMP_RS05265 -5.1 -2.0 2-isopropylmalate synthase compare
MMP_RS08720 -5.1 -1.6 4Fe-4S binding protein compare
MMP_RS01795 -4.7 -1.8 methanogenesis marker 6 protein compare
MMP_RS00300 -4.6 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01020 -4.6 -1.3 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01755 -4.4 -1.0 DUF2097 domain-containing protein compare
MMP_RS03600 -4.4 -2.5 triose-phosphate isomerase compare
MMP_RS01385 -4.4 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07345 -4.4 -6.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS04465 -4.1 -13.0 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS04445 -4.1 -6.5 P-II family nitrogen regulator compare
MMP_RS08300 -4.0 -1.1 metal-sulfur cluster assembly factor compare
MMP_RS07005 -4.0 -0.6 4Fe-4S binding protein compare
MMP_RS00520 -4.0 -2.3 RNA polymerase Rpb4 family protein compare
MMP_RS09020 -3.9 -2.1 hypothetical protein compare
MMP_RS05920 -3.8 -0.6 50S ribosomal protein L37e compare
MMP_RS06630 -3.8 -0.9 UPF0058 family protein compare
MMP_RS02245 -3.8 -2.8 hypothetical protein compare
MMP_RS02010 -3.7 -7.9 PHP domain-containing protein compare
MMP_RS03035 -3.7 -3.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02670 -3.7 -10.6 ATP-binding cassette domain-containing protein compare
MMP_RS04455 -3.6 -14.2 nitrogenase subunit alpha compare
MMP_RS07635 -3.6 -6.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01175 -3.6 -3.2 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04460 -3.5 -15.6 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS02675 -3.5 -3.8 hypothetical protein compare
MMP_RS00515 -3.5 -0.8 DUF655 domain-containing protein compare
MMP_RS04450 -3.5 -9.5 P-II family nitrogen regulator compare
MMP_RS02685 -3.4 -9.3 molybdate ABC transporter substrate-binding protein compare
MMP_RS06400 -3.4 -2.0 4Fe-4S binding protein compare
MMP_RS04440 -3.4 -9.2 nitrogenase iron protein compare
MMP_RS05930 -3.3 -2.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS03700 -3.3 -7.5 sodium:proton antiporter compare
MMP_RS08650 -3.3 -3.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS02145 -3.2 -7.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS05500 -3.1 -5.6 2-isopropylmalate synthase compare
MMP_RS04470 -3.1 -11.7 nitrogenase compare
MMP_RS04685 -3.1 -3.0 DUF126 domain-containing protein compare
MMP_RS03450 -3.1 -2.6 glycine synthesis protein GlyXS (from data) compare
MMP_RS08820 -3.1 -5.3 hypothetical protein compare
MMP_RS01800 -3.0 -2.7 TIGR00303 family protein compare
MMP_RS01610 -3.0 -2.8 hypothetical protein compare
MMP_RS00110 -3.0 -2.9 hypothetical protein compare
MMP_RS02680 -3.0 -6.2 ABC transporter permease compare
MMP_RS00555 -2.9 -6.1 MFS transporter compare
MMP_RS02730 -2.9 -8.7 ModD protein compare
MMP_RS08440 -2.9 -2.6 cell division protein SepF compare
MMP_RS06725 -2.8 -7.8 hypothetical protein compare
MMP_RS07525 -2.8 -4.6 4Fe-4S binding protein compare
MMP_RS08785 -2.8 -1.4 RNA-protein complex protein Nop10 compare
MMP_RS06625 -2.8 -2.0 DNA primase compare
MMP_RS06020 -2.8 -4.0 archaeoflavoprotein AfpA compare
MMP_RS00810 -2.7 -6.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS00040 -2.7 -5.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS04890 -2.7 -1.2 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06285 -2.7 -1.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01830 -2.7 -1.9 tRNA-Val compare
MMP_RS01225 -2.7 -5.6 DUF5379 domain-containing protein compare
MMP_RS01720 -2.7 -2.4 replication factor C large subunit compare
MMP_RS01220 -2.7 -7.0 hypothetical protein compare
MMP_RS01725 -2.7 -2.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS06270 -2.7 -3.9 TIGR00300 family protein compare
MMP_RS01380 -2.6 -4.8 PHP domain-containing protein compare
MMP_RS02175 -2.6 -1.1 DUF1611 domain-containing protein compare
MMP_RS07200 -2.6 -5.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07075 -2.6 -4.7 phosphomannomutase/phosphoglucomutase compare
MMP_RS02340 -2.5 -2.7 DNA-directed RNA polymerase subunit E'' compare
MMP_RS00685 -2.5 -2.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07445 -2.5 -4.8 helix-turn-helix domain-containing protein compare
MMP_RS07380 -2.5 -1.8 transcription elongation factor Spt5 compare
MMP_RS00915 -2.5 -4.6 DUF116 domain-containing protein compare
MMP_RS08435 -2.4 -1.6 Era-like GTP-binding protein compare
MMP_RS04780 -2.4 -3.1 ribonuclease P compare
MMP_RS05250 -2.4 -1.6 NFYB/HAP3 family transcription factor subunit compare
MMP_RS05845 -2.4 -1.7 tRNA-intron lyase compare
MMP_RS06475 -2.4 -4.0 FAD-dependent oxidoreductase compare
MMP_RS07755 -2.4 -1.5 DUF555 domain-containing protein compare
MMP_RS01545 -2.3 -1.1 CBS domain-containing protein compare
MMP_RS03110 -2.3 -5.5 glycosyltransferase family 2 protein compare
MMP_RS07350 -2.3 -2.3 preprotein translocase subunit Sec61beta compare
MMP_RS07365 -2.3 -9.2 2-phosphoglycerate kinase compare
MMP_RS06395 -2.3 -1.5 ThiF family adenylyltransferase compare
MMP_RS08210 -2.3 -1.7 phosphatidylglycerophosphatase A compare
MMP_RS06855 -2.3 -7.7 hypothetical protein compare
MMP_RS00730 -2.3 -3.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06295 -2.2 -6.0 methanogenesis marker 14 protein compare
MMP_RS07185 -2.2 -7.8 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06375 -2.2 -3.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS00735 -2.2 -3.1 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS04090 -2.2 -2.3 hypothetical protein compare
MMP_RS00725 -2.2 -7.3 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS07695 -2.2 -4.2 DUF3236 domain-containing protein compare
MMP_RS04850 -2.2 -11.0 UPF0254 family protein compare
MMP_RS06370 -2.2 -4.0 biotin synthase BioB compare
MMP_RS07700 -2.2 -7.9 DUF1188 domain-containing protein compare
MMP_RS01700 -2.2 -0.8 dihydroxy-acid dehydratase compare
MMP_RS00455 -2.2 -5.9 orotate phosphoribosyltransferase-like protein compare
MMP_RS03420 -2.1 -3.5 acetolactate synthase small subunit compare
MMP_RS01455 -2.1 -4.2 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS00310 -2.1 -6.9 CBS domain-containing protein compare
MMP_RS08570 -2.1 -6.7 coenzyme F420-0:L-glutamate ligase compare
MMP_RS04955 -2.1 -5.4 DNA topoisomerase I compare
MMP_RS00985 -2.0 -3.8 CDC48 family AAA ATPase compare
MMP_RS07600 -2.0 -2.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07355 -2.0 -0.9 transcription factor S compare
MMP_RS04585 -2.0 -8.4 AIR synthase related protein compare
MMP_RS04790 -2.0 -8.6 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01335 -2.0 -1.4 prefoldin subunit beta compare
MMP_RS01265 -1.9 -2.0 hypothetical protein compare
MMP_RS08195 -1.9 -5.7 hypothetical protein compare
MMP_RS04900 -1.9 -12.6 hypothetical protein compare
MMP_RS02800 -1.9 -4.4 nucleotidyltransferase domain-containing protein compare
MMP_RS03640 -1.9 -2.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05020 -1.9 -4.4 hypothetical protein compare
MMP_RS08860 -1.8 -4.2 MinD/ParA family protein compare
MMP_RS05430 -1.8 -4.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS04615 -1.8 -2.1 PDGLE domain-containing protein compare
MMP_RS01445 -1.8 -4.9 hypothetical protein compare
MMP_RS07575 -1.8 -3.1 RNA ligase partner protein compare
MMP_RS04215 -1.8 -6.2 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS08645 -1.8 -5.0 UPF0179 family protein compare
MMP_RS06315 -1.8 -0.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08705 -1.8 -4.9 sulfopyruvate decarboxylase subunit beta compare
MMP_RS07710 -1.8 -5.2 cell division protein FtsZ compare
MMP_RS03025 -1.8 -3.2 molybdenum cofactor guanylyltransferase compare
MMP_RS05460 -1.7 -5.1 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS02165 -1.7 -4.9 tRNA-dihydrouridine synthase compare
MMP_RS08500 -1.7 -4.3 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS08660 -1.7 -4.6 DHH family phosphoesterase compare
MMP_RS06105 -1.7 -5.2 hydrogenase maturation peptidase HycI compare
MMP_RS05345 -1.6 -4.6 hypothetical protein compare
MMP_RS00115 -1.6 -6.5 radical SAM protein compare
MMP_RS06940 -1.6 -2.7 polyprenyl diphosphate synthase compare
MMP_RS03090 -1.6 -5.7 cation:proton antiporter compare
MMP_RS06925 -1.6 -2.0 ribonuclease VapC4 compare
MMP_RS05540 -1.6 -2.2 hypothetical protein compare
MMP_RS01600 -1.6 -1.8 50S ribosomal protein L15e compare
MMP_RS05550 -1.6 -0.7 cation:proton antiporter compare
MMP_RS07090 -1.6 -5.5 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01005 -1.6 -0.9 riboflavin synthase compare
MMP_RS03960 -1.6 -1.5 hypothetical protein compare
MMP_RS01880 -1.6 -4.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08370 -1.5 -0.7 cation:proton antiporter subunit C compare
MMP_RS02190 -1.5 -2.7 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS06120 -1.5 -1.8 UPF0147 family protein compare
MMP_RS02875 -1.5 -5.0 chorismate pyruvate-lyase family protein compare
MMP_RS07545 -1.5 -0.9 HTH domain-containing protein compare
MMP_RS06840 -1.5 -0.8 DNA-directed RNA polymerase subunit N compare
MMP_RS02240 -1.5 -2.5 methanogenesis marker 7 protein compare
MMP_RS03095 -1.5 -4.3 diphthine synthase compare
MMP_RS08330 -1.4 -4.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS02955 -1.4 -2.8 DJ-1/PfpI family protein compare
MMP_RS00315 -1.4 -3.8 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS06730 -1.4 -1.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS02780 -1.4 -5.4 hypothetical protein compare
MMP_RS01900 -1.4 -7.4 hypothetical protein compare
MMP_RS07630 -1.4 -1.2 ATP-binding cassette domain-containing protein compare
MMP_RS01885 -1.4 -5.5 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS03485 -1.3 -1.9 TIGR00267 family protein compare
MMP_RS04265 -1.3 -1.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07535 -1.3 -3.8 4Fe-4S binding protein compare
MMP_RS08615 -1.3 -1.9 flagellar protein G compare
MMP_RS04500 -1.3 -7.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08155 -1.3 -4.0 hypothetical protein compare
MMP_RS01180 -1.3 -0.9 XTP/dITP diphosphatase compare
MMP_RS07415 -1.3 -3.8 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS00895 -1.3 -2.1 hypothetical protein compare
MMP_RS02345 -1.3 -1.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06895 -1.3 -0.9 selenocysteine-specific translation elongation factor compare
MMP_RS09055 -1.3 -0.8 CAP domain-containing protein compare
MMP_RS03145 -1.3 -3.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS02195 -1.2 -2.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS03205 -1.2 -1.1 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS05295 -1.2 -4.9 minichromosome maintenance protein MCM compare
MMP_RS05440 -1.2 -3.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS04870 -1.2 -1.6 TIGR02253 family HAD-type hydrolase compare
MMP_RS05280 -1.2 -4.3 COG1361 S-layer family protein compare
MMP_RS06340 -1.2 -3.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05765 -1.2 -3.0 M42 family metallopeptidase compare
MMP_RS06175 -1.2 -2.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS08460 -1.2 -1.2 proteasome-activating nucleotidase compare
MMP_RS01925 -1.2 -5.0 DUF1616 domain-containing protein compare
MMP_RS05435 -1.2 -5.5 5'/3'-nucleotidase SurE compare
MMP_RS01875 -1.2 -5.2 N-acetyltransferase compare
MMP_RS06975 -1.1 -1.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS07605 -1.1 -2.1 diadenylate cyclase compare
MMP_RS00305 -1.1 -1.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS01190 -1.1 -3.1 cadmium-translocating P-type ATPase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Thymine across organisms