Experiment set10S173 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM Putrescine Dihydrochloride

200 most important genes:

  gene name fitness t score description  
MMP_RS01500 -8.9 -2.3 CBS domain-containing protein compare
MMP_RS03960 -5.4 -1.6 hypothetical protein compare
MMP_RS08435 -5.3 -2.9 Era-like GTP-binding protein compare
MMP_RS01175 -4.8 -6.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06625 -4.7 -2.9 DNA primase compare
MMP_RS07845 -4.5 -2.9 LL-diaminopimelate aminotransferase compare
MMP_RS04445 -4.5 -9.7 P-II family nitrogen regulator compare
MMP_RS06285 -4.5 -3.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08650 -4.4 -4.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS04455 -4.3 -24.0 nitrogenase subunit alpha compare
MMP_RS04440 -4.3 -12.1 nitrogenase iron protein compare
MMP_RS04465 -4.2 -20.8 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS08860 -4.2 -7.9 MinD/ParA family protein compare
MMP_RS04460 -4.1 -23.7 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS02145 -4.1 -13.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS04450 -4.1 -15.6 P-II family nitrogen regulator compare
MMP_RS02900 -4.1 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS02010 -4.1 -12.6 PHP domain-containing protein compare
MMP_RS01020 -4.1 -1.3 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03035 -4.0 -4.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05920 -4.0 -0.6 50S ribosomal protein L37e compare
MMP_RS07345 -4.0 -8.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS02730 -4.0 -15.6 ModD protein compare
MMP_RS04470 -3.9 -17.3 nitrogenase compare
MMP_RS03450 -3.9 -3.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS07435 -3.9 -2.4 GMP synthase subunit A compare
MMP_RS02355 -3.9 -3.9 30S ribosomal protein S27ae compare
MMP_RS04890 -3.8 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02680 -3.8 -8.6 ABC transporter permease compare
MMP_RS00300 -3.8 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07635 -3.8 -10.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07525 -3.8 -10.2 4Fe-4S binding protein compare
MMP_RS00555 -3.8 -10.4 MFS transporter compare
MMP_RS05500 -3.7 -10.8 2-isopropylmalate synthase compare
MMP_RS02685 -3.7 -14.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS08715 -3.7 -2.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS05265 -3.7 -2.7 2-isopropylmalate synthase compare
MMP_RS01830 -3.7 -1.9 tRNA-Val compare
MMP_RS02670 -3.6 -15.3 ATP-binding cassette domain-containing protein compare
MMP_RS00040 -3.6 -6.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS02675 -3.5 -4.3 hypothetical protein compare
MMP_RS01385 -3.5 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00985 -3.5 -5.7 CDC48 family AAA ATPase compare
MMP_RS01610 -3.5 -4.0 hypothetical protein compare
MMP_RS02245 -3.4 -4.8 hypothetical protein compare
MMP_RS03435 -3.4 -2.2 ketol-acid reductoisomerase compare
MMP_RS08720 -3.4 -1.9 4Fe-4S binding protein compare
MMP_RS00455 -3.3 -10.0 orotate phosphoribosyltransferase-like protein compare
MMP_RS07185 -3.3 -15.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04090 -3.3 -2.8 hypothetical protein compare
MMP_RS07445 -3.3 -8.5 helix-turn-helix domain-containing protein compare
MMP_RS06725 -3.2 -13.0 hypothetical protein compare
MMP_RS06315 -3.2 -0.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS03315 -3.2 -1.8 ferrous iron transport protein A compare
MMP_RS04585 -3.2 -14.0 AIR synthase related protein compare
MMP_RS01380 -3.2 -7.0 PHP domain-containing protein compare
MMP_RS06270 -3.1 -6.9 TIGR00300 family protein compare
MMP_RS02195 -3.1 -5.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS00915 -3.1 -7.8 DUF116 domain-containing protein compare
MMP_RS04710 -3.1 -2.3 hypothetical protein compare
MMP_RS06400 -3.1 -2.2 4Fe-4S binding protein compare
MMP_RS01795 -3.1 -1.7 methanogenesis marker 6 protein compare
MMP_RS01755 -3.1 -1.4 DUF2097 domain-containing protein compare
MMP_RS03025 -3.1 -6.8 molybdenum cofactor guanylyltransferase compare
MMP_RS03445 -3.0 -1.2 methanogenesis marker 17 protein compare
MMP_RS07365 -3.0 -15.1 2-phosphoglycerate kinase compare
MMP_RS06630 -3.0 -1.0 UPF0058 family protein compare
MMP_RS00685 -3.0 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05250 -3.0 -1.7 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01800 -3.0 -4.7 TIGR00303 family protein compare
MMP_RS02345 -3.0 -4.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01225 -3.0 -5.2 DUF5379 domain-containing protein compare
MMP_RS00310 -2.9 -11.0 CBS domain-containing protein compare
MMP_RS02240 -2.9 -3.2 methanogenesis marker 7 protein compare
MMP_RS03700 -2.9 -8.8 sodium:proton antiporter compare
MMP_RS07605 -2.9 -4.4 diadenylate cyclase compare
MMP_RS03580 -2.9 -4.8 signal recognition particle-docking protein FtsY compare
MMP_RS01925 -2.9 -12.6 DUF1616 domain-containing protein compare
MMP_RS01455 -2.9 -6.7 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03640 -2.9 -4.5 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08645 -2.9 -8.5 UPF0179 family protein compare
MMP_RS08500 -2.9 -7.9 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS01325 -2.8 -2.7 dihydroneopterin aldolase family protein compare
MMP_RS06475 -2.8 -5.2 FAD-dependent oxidoreductase compare
MMP_RS06855 -2.8 -11.4 hypothetical protein compare
MMP_RS06730 -2.8 -1.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS07730 -2.8 -2.2 pyruvate synthase subunit beta compare
MMP_RS08785 -2.8 -1.4 RNA-protein complex protein Nop10 compare
MMP_RS07695 -2.8 -8.3 DUF3236 domain-containing protein compare
MMP_RS00750 -2.7 -2.5 fumarate hydratase compare
MMP_RS03600 -2.7 -2.7 triose-phosphate isomerase compare
MMP_RS08210 -2.7 -2.1 phosphatidylglycerophosphatase A compare
MMP_RS06295 -2.7 -8.7 methanogenesis marker 14 protein compare
MMP_RS01885 -2.7 -11.2 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS03110 -2.6 -7.8 glycosyltransferase family 2 protein compare
MMP_RS07200 -2.6 -8.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01880 -2.6 -8.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06020 -2.6 -5.0 archaeoflavoprotein AfpA compare
MMP_RS08195 -2.6 -9.4 hypothetical protein compare
MMP_RS01875 -2.6 -12.2 N-acetyltransferase compare
MMP_RS07390 -2.6 -2.5 cell division protein FtsZ compare
MMP_RS04685 -2.6 -4.1 DUF126 domain-containing protein compare
MMP_RS07075 -2.5 -5.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS02800 -2.5 -6.4 nucleotidyltransferase domain-containing protein compare
MMP_RS05930 -2.5 -2.8 3-isopropylmalate dehydratase large subunit compare
MMP_RS01900 -2.5 -15.4 hypothetical protein compare
MMP_RS08440 -2.5 -2.8 cell division protein SepF compare
MMP_RS02175 -2.4 -1.0 DUF1611 domain-containing protein compare
MMP_RS04850 -2.4 -16.6 UPF0254 family protein compare
MMP_RS08155 -2.4 -8.8 hypothetical protein compare
MMP_RS07700 -2.4 -13.1 DUF1188 domain-containing protein compare
MMP_RS04790 -2.4 -11.1 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS00810 -2.4 -6.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS08820 -2.3 -6.8 hypothetical protein compare
MMP_RS06895 -2.3 -1.8 selenocysteine-specific translation elongation factor compare
MMP_RS05430 -2.3 -6.6 TIGR00288 family NYN domain-containing protein compare
MMP_RS02340 -2.3 -1.7 DNA-directed RNA polymerase subunit E'' compare
MMP_RS04900 -2.3 -16.1 hypothetical protein compare
MMP_RS01725 -2.3 -4.8 class I SAM-dependent methyltransferase family protein compare
MMP_RS01220 -2.2 -7.6 hypothetical protein compare
MMP_RS09020 -2.2 -1.8 hypothetical protein compare
MMP_RS07355 -2.2 -0.9 transcription factor S compare
MMP_RS06120 -2.2 -2.3 UPF0147 family protein compare
MMP_RS04955 -2.2 -6.3 DNA topoisomerase I compare
MMP_RS01265 -2.2 -2.7 hypothetical protein compare
MMP_RS06885 -2.2 -2.9 50S ribosome-binding GTPase compare
MMP_RS04215 -2.2 -6.3 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS08165 -2.2 -1.9 phosphoglycerate dehydrogenase compare
MMP_RS00895 -2.2 -3.9 hypothetical protein compare
MMP_RS05640 -2.1 -7.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08745 -2.1 -7.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05845 -2.1 -1.5 tRNA-intron lyase compare
MMP_RS06375 -2.1 -4.3 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS00730 -2.1 -5.6 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS08705 -2.1 -5.1 sulfopyruvate decarboxylase subunit beta compare
MMP_RS00305 -2.1 -1.4 phosphoribosyl-ATP diphosphatase compare
MMP_RS00320 -2.1 -1.9 class I SAM-dependent methyltransferase compare
MMP_RS00725 -2.1 -7.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS00115 -2.1 -10.5 radical SAM protein compare
MMP_RS00735 -2.1 -3.8 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS01545 -2.1 -1.1 CBS domain-containing protein compare
MMP_RS06670 -2.0 -5.4 glucose-6-phosphate isomerase compare
MMP_RS00900 -2.0 -2.3 50S ribosomal protein L39e compare
MMP_RS05345 -2.0 -6.5 hypothetical protein compare
MMP_RS07555 -2.0 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS01005 -2.0 -1.0 riboflavin synthase compare
MMP_RS05540 -2.0 -2.9 hypothetical protein compare
MMP_RS07600 -2.0 -2.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07535 -2.0 -8.9 4Fe-4S binding protein compare
MMP_RS07380 -2.0 -2.2 transcription elongation factor Spt5 compare
MMP_RS00695 -1.9 -0.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS08635 -1.9 -1.9 UbiA family prenyltransferase compare
MMP_RS00315 -1.9 -5.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS04870 -1.9 -4.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS01905 -1.9 -11.9 glycosyltransferase compare
MMP_RS08855 -1.9 -7.7 hypothetical protein compare
MMP_RS01915 -1.8 -10.4 DUF354 domain-containing protein compare
MMP_RS07710 -1.8 -6.0 cell division protein FtsZ compare
MMP_RS06105 -1.8 -6.2 hydrogenase maturation peptidase HycI compare
MMP_RS08330 -1.8 -5.6 NADH-quinone oxidoreductase subunit H compare
MMP_RS08790 -1.8 -1.7 translation initiation factor IF-2 subunit alpha compare
MMP_RS08660 -1.8 -7.0 DHH family phosphoesterase compare
MMP_RS06395 -1.8 -2.8 ThiF family adenylyltransferase compare
MMP_RS05280 -1.8 -6.9 COG1361 S-layer family protein compare
MMP_RS02780 -1.7 -5.8 hypothetical protein compare
MMP_RS00520 -1.7 -1.6 RNA polymerase Rpb4 family protein compare
MMP_RS04780 -1.7 -2.8 ribonuclease P compare
MMP_RS07750 -1.7 -4.5 DUF357 domain-containing protein compare
MMP_RS07090 -1.7 -6.8 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01955 -1.7 -2.4 hypothetical protein compare
MMP_RS04720 -1.7 -2.9 DedA family protein compare
MMP_RS05555 -1.7 -1.3 DUF4040 domain-containing protein compare
MMP_RS07955 -1.7 -4.1 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02135 -1.7 -3.6 DUF5612 domain-containing protein compare
MMP_RS01085 -1.7 -1.9 hypothetical protein compare
MMP_RS08570 -1.7 -8.4 coenzyme F420-0:L-glutamate ligase compare
MMP_RS06355 -1.7 -2.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03205 -1.7 -1.6 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS07330 -1.7 -12.0 membrane protein compare
MMP_RS03090 -1.7 -5.8 cation:proton antiporter compare
MMP_RS01975 -1.6 -9.9 hypothetical protein compare
MMP_RS08460 -1.6 -2.0 proteasome-activating nucleotidase compare
MMP_RS05925 -1.6 -2.8 small nuclear ribonucleoprotein compare
MMP_RS07820 -1.6 -3.6 UPF0104 family protein compare
MMP_RS01665 -1.6 -2.5 DUF2111 domain-containing protein compare
MMP_RS06925 -1.6 -2.3 ribonuclease VapC4 compare
MMP_RS01335 -1.6 -2.1 prefoldin subunit beta compare
MMP_RS01890 -1.6 -3.3 nucleotide sugar dehydrogenase compare
MMP_RS05020 -1.6 -3.9 hypothetical protein compare
MMP_RS03420 -1.6 -2.8 acetolactate synthase small subunit compare
MMP_RS05285 -1.6 -5.6 MMPL family transporter compare
MMP_RS01700 -1.6 -0.7 dihydroxy-acid dehydratase compare
MMP_RS09055 -1.6 -0.8 CAP domain-containing protein compare
MMP_RS01445 -1.5 -4.6 hypothetical protein compare
MMP_RS01970 -1.5 -8.4 TIGR04279 domain-containing protein compare
MMP_RS02875 -1.5 -6.5 chorismate pyruvate-lyase family protein compare
MMP_RS05460 -1.5 -6.5 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS06015 -1.5 -4.4 flavodoxin family protein compare
MMP_RS03485 -1.5 -3.7 TIGR00267 family protein compare
MMP_RS06900 -1.5 -3.2 coenzyme F420-reducing hydrogenase FrhD protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Putrescine Dihydrochloride across organisms