Experiment set10S162 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM L-Phenylalanine

200 most important genes:

  gene name fitness t score description  
MMP_RS03435 -5.3 -2.1 ketol-acid reductoisomerase compare
MMP_RS03315 -5.0 -1.7 ferrous iron transport protein A compare
MMP_RS04440 -4.7 -13.0 nitrogenase iron protein compare
MMP_RS01500 -4.7 -3.2 CBS domain-containing protein compare
MMP_RS08715 -4.7 -2.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07345 -4.7 -8.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS03035 -4.5 -5.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS03640 -4.5 -5.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS01020 -4.4 -1.2 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS04890 -4.4 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01175 -4.3 -6.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04445 -4.2 -9.7 P-II family nitrogen regulator compare
MMP_RS06625 -4.2 -3.1 DNA primase compare
MMP_RS04465 -4.2 -18.6 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS07435 -4.1 -2.2 GMP synthase subunit A compare
MMP_RS04460 -4.1 -24.2 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS04455 -4.1 -24.6 nitrogenase subunit alpha compare
MMP_RS07605 -4.1 -3.6 diadenylate cyclase compare
MMP_RS03960 -4.0 -1.8 hypothetical protein compare
MMP_RS00555 -4.0 -11.0 MFS transporter compare
MMP_RS04470 -4.0 -20.8 nitrogenase compare
MMP_RS06475 -4.0 -6.1 FAD-dependent oxidoreductase compare
MMP_RS02355 -4.0 -3.3 30S ribosomal protein S27ae compare
MMP_RS08720 -4.0 -1.9 4Fe-4S binding protein compare
MMP_RS04450 -3.9 -16.7 P-II family nitrogen regulator compare
MMP_RS01755 -3.9 -1.1 DUF2097 domain-containing protein compare
MMP_RS07635 -3.8 -10.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02685 -3.8 -14.6 molybdate ABC transporter substrate-binding protein compare
MMP_RS09020 -3.5 -1.6 hypothetical protein compare
MMP_RS00455 -3.5 -12.6 orotate phosphoribosyltransferase-like protein compare
MMP_RS02670 -3.5 -12.6 ATP-binding cassette domain-containing protein compare
MMP_RS07525 -3.5 -12.0 4Fe-4S binding protein compare
MMP_RS07845 -3.4 -2.7 LL-diaminopimelate aminotransferase compare
MMP_RS07075 -3.4 -5.8 phosphomannomutase/phosphoglucomutase compare
MMP_RS07185 -3.4 -16.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS02680 -3.4 -9.1 ABC transporter permease compare
MMP_RS01610 -3.4 -4.2 hypothetical protein compare
MMP_RS02730 -3.3 -14.5 ModD protein compare
MMP_RS00040 -3.3 -9.1 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS02010 -3.3 -11.4 PHP domain-containing protein compare
MMP_RS07390 -3.2 -3.5 cell division protein FtsZ compare
MMP_RS08785 -3.2 -1.3 RNA-protein complex protein Nop10 compare
MMP_RS07005 -3.2 -0.6 4Fe-4S binding protein compare
MMP_RS02240 -3.2 -3.1 methanogenesis marker 7 protein compare
MMP_RS08860 -3.2 -6.1 MinD/ParA family protein compare
MMP_RS06730 -3.1 -1.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS01800 -3.1 -3.8 TIGR00303 family protein compare
MMP_RS03450 -3.1 -2.7 glycine synthesis protein GlyXS (from data) compare
MMP_RS05500 -3.1 -10.0 2-isopropylmalate synthase compare
MMP_RS06315 -3.1 -0.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS04710 -3.1 -2.4 hypothetical protein compare
MMP_RS06895 -3.1 -1.9 selenocysteine-specific translation elongation factor compare
MMP_RS01220 -3.1 -9.6 hypothetical protein compare
MMP_RS02145 -3.1 -10.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS08435 -3.0 -2.8 Era-like GTP-binding protein compare
MMP_RS07365 -3.0 -14.2 2-phosphoglycerate kinase compare
MMP_RS06285 -3.0 -3.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07200 -3.0 -7.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01385 -3.0 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS02245 -3.0 -3.1 hypothetical protein compare
MMP_RS00810 -3.0 -8.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS00750 -2.9 -3.0 fumarate hydratase compare
MMP_RS04585 -2.9 -9.6 AIR synthase related protein compare
MMP_RS03110 -2.9 -9.0 glycosyltransferase family 2 protein compare
MMP_RS00985 -2.9 -5.7 CDC48 family AAA ATPase compare
MMP_RS07730 -2.9 -1.9 pyruvate synthase subunit beta compare
MMP_RS07955 -2.8 -6.0 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS01225 -2.8 -5.1 DUF5379 domain-containing protein compare
MMP_RS03700 -2.8 -10.8 sodium:proton antiporter compare
MMP_RS01830 -2.8 -2.0 tRNA-Val compare
MMP_RS00895 -2.8 -4.0 hypothetical protein compare
MMP_RS06400 -2.8 -1.9 4Fe-4S binding protein compare
MMP_RS05430 -2.7 -6.7 TIGR00288 family NYN domain-containing protein compare
MMP_RS00915 -2.7 -6.3 DUF116 domain-containing protein compare
MMP_RS08165 -2.7 -2.5 phosphoglycerate dehydrogenase compare
MMP_RS01005 -2.7 -1.4 riboflavin synthase compare
MMP_RS08500 -2.7 -7.3 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS03445 -2.7 -1.1 methanogenesis marker 17 protein compare
MMP_RS01725 -2.7 -4.5 class I SAM-dependent methyltransferase family protein compare
MMP_RS01325 -2.6 -2.4 dihydroneopterin aldolase family protein compare
MMP_RS05265 -2.6 -2.5 2-isopropylmalate synthase compare
MMP_RS01795 -2.6 -1.5 methanogenesis marker 6 protein compare
MMP_RS03600 -2.6 -2.0 triose-phosphate isomerase compare
MMP_RS07445 -2.6 -6.4 helix-turn-helix domain-containing protein compare
MMP_RS02875 -2.6 -10.3 chorismate pyruvate-lyase family protein compare
MMP_RS02800 -2.5 -5.1 nucleotidyltransferase domain-containing protein compare
MMP_RS00310 -2.5 -8.2 CBS domain-containing protein compare
MMP_RS04790 -2.5 -10.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS00685 -2.5 -3.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS02675 -2.5 -3.3 hypothetical protein compare
MMP_RS01545 -2.5 -1.1 CBS domain-containing protein compare
MMP_RS07355 -2.5 -0.9 transcription factor S compare
MMP_RS06670 -2.5 -6.5 glucose-6-phosphate isomerase compare
MMP_RS08645 -2.5 -6.7 UPF0179 family protein compare
MMP_RS06725 -2.5 -11.0 hypothetical protein compare
MMP_RS04870 -2.4 -4.8 TIGR02253 family HAD-type hydrolase compare
MMP_RS06855 -2.4 -9.3 hypothetical protein compare
MMP_RS05925 -2.3 -4.2 small nuclear ribonucleoprotein compare
MMP_RS06295 -2.3 -6.0 methanogenesis marker 14 protein compare
MMP_RS06270 -2.3 -5.4 TIGR00300 family protein compare
MMP_RS06120 -2.2 -1.7 UPF0147 family protein compare
MMP_RS05020 -2.2 -4.3 hypothetical protein compare
MMP_RS04090 -2.2 -2.7 hypothetical protein compare
MMP_RS01455 -2.2 -4.6 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS04900 -2.2 -14.2 hypothetical protein compare
MMP_RS03090 -2.2 -8.4 cation:proton antiporter compare
MMP_RS08650 -2.2 -3.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03580 -2.2 -4.1 signal recognition particle-docking protein FtsY compare
MMP_RS06020 -2.2 -4.0 archaeoflavoprotein AfpA compare
MMP_RS02195 -2.2 -4.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01265 -2.2 -2.4 hypothetical protein compare
MMP_RS08635 -2.1 -2.2 UbiA family prenyltransferase compare
MMP_RS04685 -2.1 -2.5 DUF126 domain-containing protein compare
MMP_RS07545 -2.1 -1.1 HTH domain-containing protein compare
MMP_RS05540 -2.1 -3.1 hypothetical protein compare
MMP_RS07380 -2.0 -2.1 transcription elongation factor Spt5 compare
MMP_RS03025 -2.0 -4.0 molybdenum cofactor guanylyltransferase compare
MMP_RS03205 -2.0 -1.5 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS07535 -2.0 -8.7 4Fe-4S binding protein compare
MMP_RS06980 -1.9 -6.4 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS05930 -1.9 -2.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS04500 -1.9 -11.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08210 -1.9 -2.2 phosphatidylglycerophosphatase A compare
MMP_RS01775 -1.9 -1.8 TIGR00297 family protein compare
MMP_RS01875 -1.9 -9.1 N-acetyltransferase compare
MMP_RS06925 -1.9 -2.2 ribonuclease VapC4 compare
MMP_RS08195 -1.9 -8.6 hypothetical protein compare
MMP_RS03300 -1.9 -0.9 TOBE domain-containing protein compare
MMP_RS08705 -1.9 -5.3 sulfopyruvate decarboxylase subunit beta compare
MMP_RS08660 -1.9 -7.5 DHH family phosphoesterase compare
MMP_RS07600 -1.9 -2.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS05515 -1.9 -4.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07695 -1.9 -4.9 DUF3236 domain-containing protein compare
MMP_RS02780 -1.8 -5.7 hypothetical protein compare
MMP_RS02900 -1.8 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06900 -1.8 -3.0 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00725 -1.8 -6.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS05545 -1.8 -6.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05460 -1.8 -7.9 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS01085 -1.8 -1.9 hypothetical protein compare
MMP_RS05555 -1.8 -1.3 DUF4040 domain-containing protein compare
MMP_RS07700 -1.8 -7.8 DUF1188 domain-containing protein compare
MMP_RS00730 -1.8 -4.3 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS01195 -1.7 -1.2 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS08095 -1.7 -4.1 dethiobiotin synthase compare
MMP_RS07710 -1.7 -5.9 cell division protein FtsZ compare
MMP_RS03420 -1.7 -2.9 acetolactate synthase small subunit compare
MMP_RS04850 -1.7 -12.5 UPF0254 family protein compare
MMP_RS00035 -1.7 -5.0 DUF2098 family protein compare
MMP_RS07750 -1.7 -4.1 DUF357 domain-containing protein compare
MMP_RS01380 -1.7 -4.6 PHP domain-containing protein compare
MMP_RS06105 -1.7 -7.6 hydrogenase maturation peptidase HycI compare
MMP_RS03095 -1.7 -3.3 diphthine synthase compare
MMP_RS08820 -1.7 -5.3 hypothetical protein compare
MMP_RS08855 -1.7 -6.5 hypothetical protein compare
MMP_RS05345 -1.7 -5.6 hypothetical protein compare
MMP_RS04780 -1.7 -2.9 ribonuclease P compare
MMP_RS05280 -1.7 -7.5 COG1361 S-layer family protein compare
MMP_RS03140 -1.7 -8.7 hypothetical protein compare
MMP_RS08155 -1.7 -6.0 hypothetical protein compare
MMP_RS08790 -1.6 -1.3 translation initiation factor IF-2 subunit alpha compare
MMP_RS05640 -1.6 -6.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS00830 -1.6 -2.3 purine phosphoribosyltransferase family protein compare
MMP_RS01665 -1.6 -2.3 DUF2111 domain-containing protein compare
MMP_RS07685 -1.6 -5.1 TIGR01212 family radical SAM protein compare
MMP_RS02175 -1.6 -0.8 DUF1611 domain-containing protein compare
MMP_RS07090 -1.6 -6.7 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06355 -1.6 -1.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03485 -1.6 -3.2 TIGR00267 family protein compare
MMP_RS01890 -1.6 -4.4 nucleotide sugar dehydrogenase compare
MMP_RS08440 -1.6 -2.6 cell division protein SepF compare
MMP_RS01880 -1.6 -4.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS07575 -1.6 -2.8 RNA ligase partner protein compare
MMP_RS05765 -1.5 -3.1 M42 family metallopeptidase compare
MMP_RS05425 -1.5 -4.7 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05815 -1.5 -1.8 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00115 -1.5 -7.4 radical SAM protein compare
MMP_RS04615 -1.5 -2.5 PDGLE domain-containing protein compare
MMP_RS04955 -1.5 -3.6 DNA topoisomerase I compare
MMP_RS06230 -1.5 -1.8 helix-turn-helix domain-containing protein compare
MMP_RS06290 -1.5 -3.8 DNA repair and recombination protein RadA compare
MMP_RS02190 -1.5 -2.6 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01885 -1.5 -5.2 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06395 -1.5 -1.9 ThiF family adenylyltransferase compare
MMP_RS08330 -1.5 -5.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS08940 -1.5 -1.1 MetS family NSS transporter small subunit compare
MMP_RS02345 -1.5 -3.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS00900 -1.5 -1.8 50S ribosomal protein L39e compare
MMP_RS06350 -1.5 -4.2 HesA/MoeB/ThiF family protein compare
MMP_RS07555 -1.5 -0.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS01365 -1.4 -2.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS01540 -1.4 -1.3 DUF504 domain-containing protein compare
MMP_RS07530 -1.4 -6.5 4Fe-4S binding protein compare
MMP_RS00305 -1.4 -1.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS08105 -1.4 -4.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS04605 -1.4 -3.5 cobalt ECF transporter T component CbiQ compare
MMP_RS03015 -1.4 -3.7 GTP 3' 8-cyclase MoaA compare
MMP_RS08300 -1.4 -0.7 metal-sulfur cluster assembly factor compare
MMP_RS00320 -1.3 -1.4 class I SAM-dependent methyltransferase compare
MMP_RS06865 -1.3 -1.5 HypC/HybG/HupF family hydrogenase formation chaperone compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source L-Phenylalanine across organisms