Experiment set10S147 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM L-Lysine

200 most important genes:

  gene name fitness t score description  
MMP_RS06625 -7.4 -2.2 DNA primase compare
MMP_RS06400 -6.7 -1.8 4Fe-4S binding protein compare
MMP_RS08715 -6.5 -2.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03435 -6.2 -1.9 ketol-acid reductoisomerase compare
MMP_RS00750 -5.9 -2.0 fumarate hydratase compare
MMP_RS03445 -5.9 -0.9 methanogenesis marker 17 protein compare
MMP_RS01545 -5.8 -0.9 CBS domain-containing protein compare
MMP_RS02675 -5.7 -3.6 hypothetical protein compare
MMP_RS05845 -5.5 -1.7 tRNA-intron lyase compare
MMP_RS01175 -5.4 -5.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08720 -5.3 -1.6 4Fe-4S binding protein compare
MMP_RS04445 -5.0 -9.0 P-II family nitrogen regulator compare
MMP_RS03450 -5.0 -2.8 glycine synthesis protein GlyXS (from data) compare
MMP_RS05930 -4.9 -2.8 3-isopropylmalate dehydratase large subunit compare
MMP_RS04455 -4.9 -19.0 nitrogenase subunit alpha compare
MMP_RS01325 -4.9 -2.4 dihydroneopterin aldolase family protein compare
MMP_RS04465 -4.8 -10.7 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS04090 -4.8 -3.0 hypothetical protein compare
MMP_RS04460 -4.8 -16.6 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS04440 -4.7 -11.5 nitrogenase iron protein compare
MMP_RS03600 -4.7 -2.6 triose-phosphate isomerase compare
MMP_RS01830 -4.7 -1.7 tRNA-Val compare
MMP_RS00300 -4.7 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01755 -4.5 -1.0 DUF2097 domain-containing protein compare
MMP_RS04470 -4.5 -15.4 nitrogenase compare
MMP_RS02685 -4.5 -13.4 molybdate ABC transporter substrate-binding protein compare
MMP_RS01385 -4.4 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS04890 -4.3 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03315 -4.2 -1.8 ferrous iron transport protein A compare
MMP_RS06270 -4.2 -5.9 TIGR00300 family protein compare
MMP_RS07345 -4.2 -6.1 glycine synthesis protein GlyXL (from data) compare
MMP_RS03640 -4.2 -4.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02240 -4.2 -3.6 methanogenesis marker 7 protein compare
MMP_RS07005 -4.1 -0.6 4Fe-4S binding protein compare
MMP_RS07635 -4.1 -8.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS04450 -4.1 -12.0 P-II family nitrogen regulator compare
MMP_RS02175 -4.1 -1.0 DUF1611 domain-containing protein compare
MMP_RS07185 -4.0 -11.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05500 -4.0 -9.1 2-isopropylmalate synthase compare
MMP_RS08500 -3.9 -6.0 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS06285 -3.9 -3.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08210 -3.9 -2.5 phosphatidylglycerophosphatase A compare
MMP_RS04780 -3.9 -3.5 ribonuclease P compare
MMP_RS09020 -3.8 -2.1 hypothetical protein compare
MMP_RS08860 -3.8 -5.3 MinD/ParA family protein compare
MMP_RS07365 -3.8 -12.0 2-phosphoglycerate kinase compare
MMP_RS02355 -3.8 -3.9 30S ribosomal protein S27ae compare
MMP_RS02670 -3.8 -11.9 ATP-binding cassette domain-containing protein compare
MMP_RS08165 -3.7 -3.4 phosphoglycerate dehydrogenase compare
MMP_RS01225 -3.7 -5.1 DUF5379 domain-containing protein compare
MMP_RS02345 -3.6 -4.2 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS07730 -3.6 -2.4 pyruvate synthase subunit beta compare
MMP_RS04685 -3.6 -3.8 DUF126 domain-containing protein compare
MMP_RS02730 -3.6 -11.8 ModD protein compare
MMP_RS00555 -3.5 -6.6 MFS transporter compare
MMP_RS02680 -3.5 -5.7 ABC transporter permease compare
MMP_RS08645 -3.5 -6.6 UPF0179 family protein compare
MMP_RS01500 -3.5 -2.2 CBS domain-containing protein compare
MMP_RS01220 -3.5 -8.2 hypothetical protein compare
MMP_RS06295 -3.4 -6.8 methanogenesis marker 14 protein compare
MMP_RS02010 -3.4 -9.1 PHP domain-containing protein compare
MMP_RS00110 -3.4 -3.1 hypothetical protein compare
MMP_RS00455 -3.4 -6.1 orotate phosphoribosyltransferase-like protein compare
MMP_RS02245 -3.4 -3.2 hypothetical protein compare
MMP_RS07525 -3.4 -6.5 4Fe-4S binding protein compare
MMP_RS07380 -3.4 -2.4 transcription elongation factor Spt5 compare
MMP_RS01700 -3.4 -0.7 dihydroxy-acid dehydratase compare
MMP_RS06855 -3.4 -8.9 hypothetical protein compare
MMP_RS07600 -3.3 -2.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01610 -3.3 -3.1 hypothetical protein compare
MMP_RS04585 -3.3 -11.2 AIR synthase related protein compare
MMP_RS03025 -3.2 -4.9 molybdenum cofactor guanylyltransferase compare
MMP_RS01800 -3.2 -3.8 TIGR00303 family protein compare
MMP_RS06475 -3.2 -5.1 FAD-dependent oxidoreductase compare
MMP_RS07390 -3.2 -3.6 cell division protein FtsZ compare
MMP_RS00310 -3.1 -7.1 CBS domain-containing protein compare
MMP_RS03110 -3.1 -6.4 glycosyltransferase family 2 protein compare
MMP_RS05925 -3.1 -3.8 small nuclear ribonucleoprotein compare
MMP_RS00040 -3.1 -5.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS00735 -3.1 -4.1 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06120 -3.1 -2.3 UPF0147 family protein compare
MMP_RS06885 -3.1 -2.3 50S ribosome-binding GTPase compare
MMP_RS07445 -3.1 -6.0 helix-turn-helix domain-containing protein compare
MMP_RS05265 -3.0 -2.8 2-isopropylmalate synthase compare
MMP_RS08650 -3.0 -4.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01005 -3.0 -1.5 riboflavin synthase compare
MMP_RS00685 -3.0 -3.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00915 -3.0 -4.9 DUF116 domain-containing protein compare
MMP_RS01455 -3.0 -6.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01725 -3.0 -4.0 class I SAM-dependent methyltransferase family protein compare
MMP_RS06895 -3.0 -2.3 selenocysteine-specific translation elongation factor compare
MMP_RS08855 -2.9 -8.0 hypothetical protein compare
MMP_RS07200 -2.9 -5.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS03475 -2.9 -0.7 hypothetical protein compare
MMP_RS02145 -2.9 -8.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS03700 -2.9 -6.7 sodium:proton antiporter compare
MMP_RS03960 -2.9 -1.9 hypothetical protein compare
MMP_RS01265 -2.8 -2.6 hypothetical protein compare
MMP_RS03035 -2.8 -3.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05345 -2.7 -6.2 hypothetical protein compare
MMP_RS05550 -2.7 -0.9 cation:proton antiporter compare
MMP_RS04870 -2.7 -4.7 TIGR02253 family HAD-type hydrolase compare
MMP_RS05815 -2.7 -2.7 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS04710 -2.7 -1.9 hypothetical protein compare
MMP_RS07605 -2.6 -3.6 diadenylate cyclase compare
MMP_RS05430 -2.6 -6.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS01795 -2.6 -1.3 methanogenesis marker 6 protein compare
MMP_RS04955 -2.6 -6.5 DNA topoisomerase I compare
MMP_RS06630 -2.6 -1.0 UPF0058 family protein compare
MMP_RS07700 -2.6 -10.2 DUF1188 domain-containing protein compare
MMP_RS00520 -2.6 -1.8 RNA polymerase Rpb4 family protein compare
MMP_RS02135 -2.6 -4.6 DUF5612 domain-containing protein compare
MMP_RS00725 -2.5 -7.7 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS02875 -2.5 -7.7 chorismate pyruvate-lyase family protein compare
MMP_RS00985 -2.5 -5.1 CDC48 family AAA ATPase compare
MMP_RS06725 -2.5 -8.6 hypothetical protein compare
MMP_RS07955 -2.5 -3.7 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02900 -2.5 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS00810 -2.4 -5.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS04850 -2.4 -14.6 UPF0254 family protein compare
MMP_RS05920 -2.4 -0.6 50S ribosomal protein L37e compare
MMP_RS08785 -2.4 -1.3 RNA-protein complex protein Nop10 compare
MMP_RS08440 -2.4 -2.2 cell division protein SepF compare
MMP_RS07435 -2.4 -2.1 GMP synthase subunit A compare
MMP_RS06020 -2.4 -4.6 archaeoflavoprotein AfpA compare
MMP_RS02800 -2.4 -4.6 nucleotidyltransferase domain-containing protein compare
MMP_RS03580 -2.4 -4.6 signal recognition particle-docking protein FtsY compare
MMP_RS07695 -2.4 -6.2 DUF3236 domain-containing protein compare
MMP_RS00730 -2.3 -5.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06975 -2.3 -2.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS04615 -2.3 -3.4 PDGLE domain-containing protein compare
MMP_RS06395 -2.3 -4.0 ThiF family adenylyltransferase compare
MMP_RS06110 -2.2 -3.3 ATP-dependent protease LonB compare
MMP_RS01720 -2.2 -2.0 replication factor C large subunit compare
MMP_RS07735 -2.2 -0.5 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04900 -2.2 -13.8 hypothetical protein compare
MMP_RS01380 -2.2 -4.4 PHP domain-containing protein compare
MMP_RS01880 -2.2 -6.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS09055 -2.2 -1.0 CAP domain-containing protein compare
MMP_RS06105 -2.1 -7.8 hydrogenase maturation peptidase HycI compare
MMP_RS04215 -2.1 -5.4 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS08435 -2.1 -2.2 Era-like GTP-binding protein compare
MMP_RS07710 -2.1 -5.3 cell division protein FtsZ compare
MMP_RS08745 -2.1 -6.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS02340 -2.1 -1.5 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06315 -2.0 -0.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08155 -2.0 -7.2 hypothetical protein compare
MMP_RS07090 -2.0 -6.8 tRNA (adenine-N1)-methyltransferase compare
MMP_RS07845 -2.0 -1.9 LL-diaminopimelate aminotransferase compare
MMP_RS08705 -1.9 -6.4 sulfopyruvate decarboxylase subunit beta compare
MMP_RS07535 -1.9 -8.4 4Fe-4S binding protein compare
MMP_RS01195 -1.9 -1.2 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS08195 -1.9 -5.7 hypothetical protein compare
MMP_RS07575 -1.9 -4.4 RNA ligase partner protein compare
MMP_RS06370 -1.9 -4.1 biotin synthase BioB compare
MMP_RS00315 -1.8 -3.9 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07075 -1.8 -3.2 phosphomannomutase/phosphoglucomutase compare
MMP_RS03205 -1.8 -1.7 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08660 -1.8 -6.5 DHH family phosphoesterase compare
MMP_RS01445 -1.8 -5.6 hypothetical protein compare
MMP_RS06230 -1.8 -2.2 helix-turn-helix domain-containing protein compare
MMP_RS08330 -1.8 -4.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS02780 -1.8 -5.2 hypothetical protein compare
MMP_RS06670 -1.8 -3.2 glucose-6-phosphate isomerase compare
MMP_RS03090 -1.7 -4.7 cation:proton antiporter compare
MMP_RS06730 -1.7 -1.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS05460 -1.7 -8.0 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS07685 -1.7 -5.5 TIGR01212 family radical SAM protein compare
MMP_RS07820 -1.7 -5.2 UPF0104 family protein compare
MMP_RS05540 -1.7 -2.1 hypothetical protein compare
MMP_RS07330 -1.7 -11.6 membrane protein compare
MMP_RS05425 -1.7 -3.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06840 -1.7 -0.9 DNA-directed RNA polymerase subunit N compare
MMP_RS07355 -1.7 -0.8 transcription factor S compare
MMP_RS01875 -1.7 -7.3 N-acetyltransferase compare
MMP_RS03560 -1.6 -10.1 Na+/H+ antiporter NhaC family protein compare
MMP_RS08095 -1.6 -5.7 dethiobiotin synthase compare
MMP_RS01085 -1.6 -1.8 hypothetical protein compare
MMP_RS01020 -1.6 -1.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06375 -1.6 -4.0 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS05440 -1.6 -7.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS08460 -1.6 -1.7 proteasome-activating nucleotidase compare
MMP_RS02195 -1.6 -2.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08570 -1.6 -6.4 coenzyme F420-0:L-glutamate ligase compare
MMP_RS06015 -1.6 -4.5 flavodoxin family protein compare
MMP_RS00115 -1.6 -6.9 radical SAM protein compare
MMP_RS00900 -1.6 -1.9 50S ribosomal protein L39e compare
MMP_RS02165 -1.6 -4.0 tRNA-dihydrouridine synthase compare
MMP_RS04500 -1.5 -8.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01885 -1.5 -5.0 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS05580 -1.5 -9.3 glycosyltransferase compare
MMP_RS05765 -1.5 -2.6 M42 family metallopeptidase compare
MMP_RS02190 -1.5 -2.9 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS07530 -1.5 -6.0 4Fe-4S binding protein compare
MMP_RS01890 -1.5 -3.7 nucleotide sugar dehydrogenase compare
MMP_RS05295 -1.5 -7.2 minichromosome maintenance protein MCM compare
MMP_RS05020 -1.5 -3.0 hypothetical protein compare
MMP_RS08635 -1.5 -1.3 UbiA family prenyltransferase compare
MMP_RS04485 -1.4 -6.9 putative beta-lysine N-acetyltransferase compare
MMP_RS06900 -1.4 -2.2 coenzyme F420-reducing hydrogenase FrhD protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Lysine in Methanococcus maripaludis S2

For nitrogen source L-Lysine across organisms