Experiment set10S145 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM L-Arginine

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS04885 +2.7 13.5 sulfite exporter TauE/SafE family protein compare
MMP_RS02885 +2.4 12.0 molybdopterin biosynthesis protein compare
MMP_RS08320 +2.4 4.8 molybdopterin molybdotransferase MoeA compare
MMP_RS08310 +2.1 4.1 TMEM165/GDT1 family protein compare
MMP_RS00375 +2.0 9.5 ammonium transporter compare
MMP_RS07765 +2.0 9.5 sodium:alanine symporter family protein compare
MMP_RS06720 +1.8 6.2 response regulator transcription factor compare
MMP_RS01145 +1.7 7.4 ABC transporter ATP-binding protein compare
MMP_RS01135 +1.6 8.3 molybdate ABC transporter substrate-binding protein compare
MMP_RS05975 +1.6 2.3 hypothetical protein compare
MMP_RS06870 +1.5 6.4 DedA family protein compare
MMP_RS00325 +1.5 2.3 RNA-binding protein compare
MMP_RS06715 +1.4 7.8 cache domain-containing protein compare
MMP_RS02045 +1.2 1.8 tRNA-Met compare
MMP_RS00185 +1.2 7.2 potassium channel protein compare
MMP_RS00290 +1.2 4.0 hypothetical protein compare
MMP_RS00430 +1.1 2.1 hypothetical protein compare
MMP_RS00295 +1.1 2.5 gamma carbonic anhydrase family protein compare
MMP_RS02290 +1.1 6.2 MBL fold metallo-hydrolase compare
MMP_RS07850 +1.1 2.8 prephenate dehydratase compare
MMP_RS06590 +1.0 2.9 GNAT family N-acetyltransferase compare
MMP_RS02390 +1.0 3.7 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS01570 +0.9 1.2 hypothetical protein compare
MMP_RS08365 +0.9 2.5 energy conserving hydrogenase EhbF compare
MMP_RS06585 +0.8 1.4 DMT family protein compare
MMP_RS06345 +0.8 4.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01415 +0.8 1.6 DUF2067 domain-containing protein compare
MMP_RS08760 +0.8 2.0 hypothetical protein compare
MMP_RS00660 +0.8 4.6 alkaline phosphatase family protein compare
MMP_RS06745 +0.8 3.6 DUF2119 domain-containing protein compare
MMP_RS08260 +0.8 2.8 DUF99 family protein compare
MMP_RS03150 +0.8 4.1 phosphoglycerate mutase compare
MMP_RS06540 +0.8 1.8 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS07840 +0.8 1.1 ribonuclease III compare
MMP_RS08775 +0.8 2.7 methanogenesis marker 9 domain-containing protein compare
MMP_RS00650 +0.8 2.8 ABC transporter ATP-binding protein compare
MMP_RS01495 +0.8 3.0 TraB/GumN family protein compare
MMP_RS05315 +0.8 1.2 hypothetical protein compare
MMP_RS01435 +0.8 2.5 DMT family transporter compare
MMP_RS05110 +0.7 2.5 16S ribosomal RNA methyltransferase A compare
MMP_RS06905 +0.7 1.4 hypothetical protein compare
MMP_RS08275 +0.7 2.8 hypothetical protein compare
MMP_RS08340 +0.7 1.5 4Fe-4S binding protein compare
MMP_RS05720 +0.7 1.1 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS03895 +0.7 1.8 hypothetical protein compare
MMP_RS01200 +0.7 2.6 hypothetical protein compare
MMP_RS08415 +0.7 1.7 radical SAM protein compare
MMP_RS07155 +0.7 1.6 MFS transporter compare
MMP_RS00155 +0.7 2.1 heavy metal-binding domain-containing protein compare
MMP_RS02300 +0.7 2.7 NAD(P)H-dependent oxidoreductase compare
MMP_RS05355 +0.7 0.5 hypothetical protein compare
MMP_RS02605 +0.7 0.5 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS06840 +0.7 0.6 DNA-directed RNA polymerase subunit N compare
MMP_RS08395 +0.7 2.4 DsrE family protein compare
MMP_RS07960 +0.7 3.3 sugar phosphate isomerase/epimerase compare
MMP_RS00855 +0.7 3.2 DUF367 family protein compare
MMP_RS00345 +0.7 1.7 DUF2666 domain-containing protein compare
MMP_RS01120 +0.7 2.2 permease compare
MMP_RS07650 +0.7 3.4 TldD/PmbA family protein compare
MMP_RS00450 +0.6 0.9 4Fe-4S binding protein compare
MMP_RS07125 +0.6 1.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08835 +0.6 3.5 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS06325 +0.6 0.8 hypothetical protein compare
MMP_RS00960 +0.6 1.3 iron export ABC transporter permease subunit FetB compare
MMP_RS00990 +0.6 2.2 hypothetical protein compare
MMP_RS01240 +0.6 0.5 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS00335 +0.6 1.7 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS08160 +0.6 2.2 EamA family transporter compare
MMP_RS00940 +0.6 2.9 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS06685 +0.6 3.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS05090 +0.6 2.2 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS07540 +0.6 1.4 CBS domain-containing protein compare
MMP_RS01160 +0.6 2.4 DMT family transporter compare
MMP_RS08390 +0.6 2.3 DUF5400 domain-containing protein compare
MMP_RS00085 +0.6 3.5 DNA cytosine methyltransferase compare
MMP_RS08555 +0.6 1.3 hypothetical protein compare
MMP_RS01785 +0.6 2.2 hypothetical protein compare
MMP_RS00385 +0.5 2.1 P-II family nitrogen regulator compare
MMP_RS00675 +0.5 0.5 nitroreductase family protein compare
MMP_RS05795 +0.5 1.6 redox-regulated ATPase YchF compare
MMP_RS00545 +0.5 0.9 XRE family transcriptional regulator compare
MMP_RS04635 +0.5 2.6 GNAT family N-acetyltransferase compare
MMP_RS01630 +0.5 2.5 N-glycosylase/DNA lyase compare
MMP_RS06525 +0.5 0.6 YciI family protein compare
MMP_RS00700 +0.5 2.2 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS08725 +0.5 0.5 Ni/Fe hydrogenase subunit alpha compare
MMP_RS06440 +0.5 2.1 CBS domain-containing protein compare
MMP_RS08075 +0.5 1.4 DUF749 domain-containing protein compare
MMP_RS05470 +0.5 2.6 DUF523 and DUF1722 domain-containing protein compare
MMP_RS00395 +0.5 0.7 MGMT family protein compare
MMP_RS02915 +0.5 1.3 amino acid ABC transporter permease compare
MMP_RS04050 +0.5 1.9 hypothetical protein compare
MMP_RS01055 +0.5 2.0 hypothetical protein compare
MMP_RS00565 +0.5 1.6 CBS domain-containing protein compare
MMP_RS06910 +0.5 2.9 RlmF-related methyltransferase compare
MMP_RS03220 +0.5 1.2 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS01130 +0.5 2.6 flavoprotein compare
MMP_RS05065 +0.5 1.5 CooT family nickel-binding protein compare
MMP_RS05695 +0.5 1.7 phospholipase D-like domain-containing protein compare
MMP_RS07560 +0.5 1.2 prefoldin subunit alpha compare
MMP_RS08430 +0.5 1.4 HAD family hydrolase compare
MMP_RS07915 +0.5 1.7 DUF4870 domain-containing protein compare
MMP_RS08485 +0.5 2.2 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS01985 +0.5 1.4 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS00800 +0.5 2.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06320 +0.5 1.4 hypothetical protein compare
MMP_RS08890 +0.5 3.2 glycosyltransferase family 4 protein compare
MMP_RS01640 +0.5 2.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMP_RS05820 +0.5 1.7 RNA-binding transcriptional accessory protein compare
MMP_RS03890 +0.5 2.0 DUF2540 domain-containing protein compare
MMP_RS07985 +0.5 2.5 nitroreductase family protein compare
MMP_RS04225 +0.5 1.4 hypothetical protein compare
MMP_RS09065 +0.5 2.4 hypothetical protein compare
MMP_RS07615 +0.5 2.2 energy-coupling factor ABC transporter permease compare
MMP_RS08455 +0.5 1.3 multiprotein bridging factor aMBF1 compare
MMP_RS01525 +0.5 0.8 nucleoside-diphosphate kinase compare
MMP_RS04100 +0.5 0.8 hypothetical protein compare
MMP_RS01260 +0.5 1.7 HDIG domain-containing protein compare
MMP_RS06770 +0.4 1.2 DHH family phosphoesterase compare
MMP_RS00955 +0.4 2.6 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS06075 +0.4 2.1 class I SAM-dependent methyltransferase compare
MMP_RS07890 +0.4 0.8 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS05940 +0.4 2.2 corrinoid protein compare
MMP_RS00195 +0.4 3.3 DUF4013 domain-containing protein compare
MMP_RS00950 +0.4 1.5 site-2 protease family protein compare
MMP_RS00670 +0.4 1.2 TIM barrel protein compare
MMP_RS06570 +0.4 1.4 DUF190 domain-containing protein compare
MMP_RS01320 +0.4 1.2 hypothetical protein compare
MMP_RS06545 +0.4 1.0 ferredoxin family protein compare
MMP_RS07775 +0.4 0.9 alanine dehydrogenase compare
MMP_RS07150 +0.4 1.4 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS00630 +0.4 2.0 ECF transporter S component compare
MMP_RS02310 +0.4 0.5 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS07620 +0.4 0.9 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS05365 +0.4 0.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS07625 +0.4 0.8 cobalt ECF transporter T component CbiQ compare
MMP_RS08410 +0.4 1.3 DUF169 domain-containing protein compare
MMP_RS06705 +0.4 1.2 formate/nitrite transporter family protein compare
MMP_RS05780 +0.4 1.8 multidrug resistance efflux transporter family protein compare
MMP_RS01060 +0.4 1.9 calcium/sodium antiporter compare
MMP_RS03065 +0.4 0.7 AzlC family ABC transporter permease compare
MMP_RS01420 +0.4 0.5 hypothetical protein compare
MMP_RS01140 +0.4 0.5 molybdate ABC transporter permease subunit compare
MMP_RS07895 +0.4 0.6 cytochrome c compare
MMP_RS08200 +0.4 1.9 archaeosine synthase subunit alpha compare
MMP_RS08240 +0.4 1.1 methanogenesis marker 16 metalloprotein compare
MMP_RS05435 +0.4 1.5 5'/3'-nucleotidase SurE compare
MMP_RS06680 +0.4 1.9 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08235 +0.4 1.6 hypothetical protein compare
MMP_RS08265 +0.4 1.4 rubrerythrin compare
MMP_RS02170 +0.4 1.1 CBS domain-containing protein compare
MMP_RS08700 +0.4 1.4 hypothetical protein compare
MMP_RS00975 +0.4 1.8 HD domain-containing protein compare
MMP_RS07095 +0.4 0.8 PspC domain-containing protein compare
MMP_RS00125 +0.4 0.5 DUF2798 domain-containing protein compare
MMP_RS08070 +0.4 1.0 DUF2096 domain-containing protein compare
MMP_RS07800 +0.4 1.2 ATP-binding cassette domain-containing protein compare
MMP_RS06190 +0.4 2.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS03740 +0.4 1.4 indolepyruvate oxidoreductase subunit beta compare
MMP_RS03325 +0.4 1.3 hypothetical protein compare
MMP_RS01685 +0.4 0.8 indolepyruvate oxidoreductase subunit beta compare
MMP_RS06250 +0.4 1.2 hypothetical protein compare
MMP_RS02495 +0.4 0.7 hypothetical protein compare
MMP_RS02745 +0.4 0.8 hypothetical protein compare
MMP_RS04315 +0.3 1.4 corrinoid protein compare
MMP_RS08085 +0.3 1.9 hypothetical protein compare
MMP_RS00130 +0.3 0.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS06660 +0.3 1.6 glycosyltransferase family 4 protein compare
MMP_RS06495 +0.3 0.6 YkgJ family cysteine cluster protein compare
MMP_RS08280 +0.3 0.9 proteasome assembly chaperone family protein compare
MMP_RS05080 +0.3 1.7 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS06965 +0.3 1.1 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS01855 +0.3 1.2 2-hydroxyacyl-CoA dehydratase family protein compare
MMP_RS02375 +0.3 2.1 hypothetical protein compare
MMP_RS00665 +0.3 1.1 hypothetical protein compare
MMP_RS07100 +0.3 1.4 hypothetical protein compare
MMP_RS08090 +0.3 1.1 hypothetical protein compare
MMP_RS08380 +0.3 1.6 phosphatase PAP2 family protein compare
MMP_RS05825 +0.3 1.2 peptidyl-prolyl cis-trans isomerase compare
MMP_RS04060 +0.3 0.6 hypothetical protein compare
MMP_RS04800 +0.3 1.3 chemotaxis protein CheW compare
MMP_RS05085 +0.3 1.2 AAA family ATPase compare
MMP_RS04190 +0.3 1.2 hypothetical protein compare
MMP_RS03480 +0.3 1.3 SulP family inorganic anion transporter compare
MMP_RS06065 +0.3 2.1 iron ABC transporter substrate-binding protein compare
MMP_RS03575 +0.3 1.5 ECF transporter S component compare
MMP_RS07835 +0.3 0.9 TldD/PmbA family protein compare
MMP_RS04740 +0.3 1.0 DUF473 domain-containing protein compare
MMP_RS08640 +0.3 1.3 TIM barrel protein compare
MMP_RS04945 +0.3 1.2 hypothetical protein compare
MMP_RS05995 +0.3 1.5 FprA family A-type flavoprotein compare
MMP_RS09030 +0.3 1.0 hypothetical protein compare
MMP_RS04120 +0.3 1.5 hypothetical protein compare
MMP_RS01485 +0.3 1.3 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS05130 +0.3 2.1 DUF2226 domain-containing protein compare
MMP_RS05675 +0.3 0.5 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS01090 +0.3 1.3 ABC transporter substrate-binding protein compare
MMP_RS01660 +0.3 0.7 hypothetical protein compare
MMP_RS06430 +0.3 1.0 6-carboxytetrahydropterin synthase QueD compare
MMP_RS00120 +0.3 0.8 LysR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Arginine in Methanococcus maripaludis S2

For nitrogen source L-Arginine across organisms