Experiment set10S134 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM Cytidine

200 most important genes:

  gene name fitness t score description  
MMP_RS01500 -6.5 -2.7 CBS domain-containing protein compare
MMP_RS02340 -6.4 -1.9 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06400 -5.7 -2.0 4Fe-4S binding protein compare
MMP_RS01020 -5.4 -1.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01175 -4.7 -6.2 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03450 -4.5 -2.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS00555 -4.5 -8.7 MFS transporter compare
MMP_RS02680 -4.5 -9.1 ABC transporter permease compare
MMP_RS03035 -4.5 -4.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04470 -4.5 -19.8 nitrogenase compare
MMP_RS01610 -4.4 -4.0 hypothetical protein compare
MMP_RS04440 -4.3 -14.4 nitrogenase iron protein compare
MMP_RS04460 -4.3 -23.6 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS06625 -4.3 -2.4 DNA primase compare
MMP_RS07845 -4.3 -2.5 LL-diaminopimelate aminotransferase compare
MMP_RS04455 -4.2 -26.3 nitrogenase subunit alpha compare
MMP_RS02730 -4.2 -13.6 ModD protein compare
MMP_RS04465 -4.2 -21.1 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS04445 -4.2 -9.2 P-II family nitrogen regulator compare
MMP_RS03435 -4.1 -2.3 ketol-acid reductoisomerase compare
MMP_RS01005 -4.1 -1.5 riboflavin synthase compare
MMP_RS01830 -4.0 -2.0 tRNA-Val compare
MMP_RS04450 -4.0 -15.5 P-II family nitrogen regulator compare
MMP_RS02010 -4.0 -12.3 PHP domain-containing protein compare
MMP_RS02670 -4.0 -17.3 ATP-binding cassette domain-containing protein compare
MMP_RS07525 -4.0 -10.2 4Fe-4S binding protein compare
MMP_RS02685 -3.9 -12.5 molybdate ABC transporter substrate-binding protein compare
MMP_RS02675 -3.9 -4.2 hypothetical protein compare
MMP_RS02355 -3.8 -4.1 30S ribosomal protein S27ae compare
MMP_RS03960 -3.8 -1.9 hypothetical protein compare
MMP_RS01800 -3.8 -5.0 TIGR00303 family protein compare
MMP_RS07345 -3.7 -8.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS04890 -3.7 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01385 -3.7 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08715 -3.7 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03110 -3.7 -10.0 glycosyltransferase family 2 protein compare
MMP_RS07435 -3.6 -2.2 GMP synthase subunit A compare
MMP_RS07605 -3.6 -5.2 diadenylate cyclase compare
MMP_RS03600 -3.6 -2.6 triose-phosphate isomerase compare
MMP_RS00915 -3.6 -10.9 DUF116 domain-containing protein compare
MMP_RS08860 -3.6 -7.1 MinD/ParA family protein compare
MMP_RS06475 -3.5 -5.4 FAD-dependent oxidoreductase compare
MMP_RS01545 -3.5 -1.2 CBS domain-containing protein compare
MMP_RS05500 -3.5 -10.4 2-isopropylmalate synthase compare
MMP_RS08645 -3.5 -8.5 UPF0179 family protein compare
MMP_RS01795 -3.5 -1.8 methanogenesis marker 6 protein compare
MMP_RS01225 -3.5 -4.7 DUF5379 domain-containing protein compare
MMP_RS00985 -3.5 -6.1 CDC48 family AAA ATPase compare
MMP_RS00750 -3.4 -3.0 fumarate hydratase compare
MMP_RS01335 -3.4 -2.8 prefoldin subunit beta compare
MMP_RS06630 -3.4 -1.0 UPF0058 family protein compare
MMP_RS01380 -3.4 -7.3 PHP domain-containing protein compare
MMP_RS02145 -3.3 -11.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS01755 -3.3 -1.3 DUF2097 domain-containing protein compare
MMP_RS07185 -3.3 -14.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00040 -3.3 -7.5 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS00695 -3.3 -0.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS08720 -3.3 -1.9 4Fe-4S binding protein compare
MMP_RS03025 -3.3 -7.0 molybdenum cofactor guanylyltransferase compare
MMP_RS07005 -3.3 -0.7 4Fe-4S binding protein compare
MMP_RS03640 -3.3 -4.0 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02245 -3.2 -3.3 hypothetical protein compare
MMP_RS07635 -3.2 -8.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07380 -3.2 -2.5 transcription elongation factor Spt5 compare
MMP_RS02800 -3.2 -8.1 nucleotidyltransferase domain-containing protein compare
MMP_RS07600 -3.2 -3.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08165 -3.1 -3.5 phosphoglycerate dehydrogenase compare
MMP_RS08855 -3.1 -11.7 hypothetical protein compare
MMP_RS08435 -3.1 -2.9 Era-like GTP-binding protein compare
MMP_RS05920 -3.1 -0.6 50S ribosomal protein L37e compare
MMP_RS00310 -3.1 -9.7 CBS domain-containing protein compare
MMP_RS03700 -3.0 -9.8 sodium:proton antiporter compare
MMP_RS07445 -3.0 -6.5 helix-turn-helix domain-containing protein compare
MMP_RS00300 -2.9 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS02240 -2.9 -3.9 methanogenesis marker 7 protein compare
MMP_RS04585 -2.9 -12.2 AIR synthase related protein compare
MMP_RS08790 -2.9 -1.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS03445 -2.9 -1.2 methanogenesis marker 17 protein compare
MMP_RS04710 -2.9 -2.2 hypothetical protein compare
MMP_RS01725 -2.8 -5.8 class I SAM-dependent methyltransferase family protein compare
MMP_RS06855 -2.8 -9.5 hypothetical protein compare
MMP_RS05930 -2.8 -2.5 3-isopropylmalate dehydratase large subunit compare
MMP_RS04685 -2.8 -3.4 DUF126 domain-containing protein compare
MMP_RS00305 -2.8 -2.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS06315 -2.7 -0.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06270 -2.7 -5.6 TIGR00300 family protein compare
MMP_RS05430 -2.7 -6.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS04955 -2.7 -9.6 DNA topoisomerase I compare
MMP_RS06285 -2.7 -2.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS09020 -2.7 -1.7 hypothetical protein compare
MMP_RS07545 -2.6 -1.3 HTH domain-containing protein compare
MMP_RS06725 -2.6 -12.5 hypothetical protein compare
MMP_RS00810 -2.6 -7.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03315 -2.6 -1.7 ferrous iron transport protein A compare
MMP_RS04090 -2.6 -3.2 hypothetical protein compare
MMP_RS05265 -2.5 -2.8 2-isopropylmalate synthase compare
MMP_RS01220 -2.5 -7.4 hypothetical protein compare
MMP_RS08195 -2.5 -9.5 hypothetical protein compare
MMP_RS07200 -2.5 -7.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02190 -2.5 -3.4 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01665 -2.5 -3.6 DUF2111 domain-containing protein compare
MMP_RS00895 -2.5 -4.0 hypothetical protein compare
MMP_RS05540 -2.5 -2.7 hypothetical protein compare
MMP_RS08500 -2.5 -6.0 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS00685 -2.5 -4.6 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04780 -2.5 -3.8 ribonuclease P compare
MMP_RS05280 -2.5 -10.2 COG1361 S-layer family protein compare
MMP_RS06885 -2.5 -3.2 50S ribosome-binding GTPase compare
MMP_RS06175 -2.4 -6.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS03580 -2.4 -3.9 signal recognition particle-docking protein FtsY compare
MMP_RS01445 -2.4 -8.6 hypothetical protein compare
MMP_RS00725 -2.4 -6.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS04850 -2.3 -16.2 UPF0254 family protein compare
MMP_RS01265 -2.3 -1.9 hypothetical protein compare
MMP_RS02875 -2.3 -9.8 chorismate pyruvate-lyase family protein compare
MMP_RS04790 -2.3 -10.7 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08650 -2.3 -3.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS07365 -2.3 -14.1 2-phosphoglycerate kinase compare
MMP_RS06925 -2.3 -2.3 ribonuclease VapC4 compare
MMP_RS07735 -2.3 -0.5 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07695 -2.3 -7.2 DUF3236 domain-containing protein compare
MMP_RS00735 -2.3 -3.5 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06895 -2.3 -1.8 selenocysteine-specific translation elongation factor compare
MMP_RS02345 -2.2 -2.9 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08635 -2.2 -2.2 UbiA family prenyltransferase compare
MMP_RS07730 -2.2 -2.1 pyruvate synthase subunit beta compare
MMP_RS03090 -2.2 -9.5 cation:proton antiporter compare
MMP_RS02900 -2.2 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06020 -2.2 -4.0 archaeoflavoprotein AfpA compare
MMP_RS07575 -2.2 -3.0 RNA ligase partner protein compare
MMP_RS08705 -2.2 -5.3 sulfopyruvate decarboxylase subunit beta compare
MMP_RS06730 -2.2 -1.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS01455 -2.2 -3.4 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS00115 -2.2 -9.4 radical SAM protein compare
MMP_RS07390 -2.1 -2.7 cell division protein FtsZ compare
MMP_RS02195 -2.1 -3.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS04500 -2.1 -12.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS04870 -2.1 -5.7 TIGR02253 family HAD-type hydrolase compare
MMP_RS06295 -2.1 -6.4 methanogenesis marker 14 protein compare
MMP_RS00730 -2.1 -4.3 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS00455 -2.1 -5.3 orotate phosphoribosyltransferase-like protein compare
MMP_RS07075 -2.1 -4.0 phosphomannomutase/phosphoglucomutase compare
MMP_RS06230 -2.1 -2.8 helix-turn-helix domain-containing protein compare
MMP_RS07355 -2.1 -0.9 transcription factor S compare
MMP_RS07700 -2.1 -10.3 DUF1188 domain-containing protein compare
MMP_RS06370 -2.1 -4.0 biotin synthase BioB compare
MMP_RS08440 -2.1 -2.6 cell division protein SepF compare
MMP_RS01325 -2.1 -2.4 dihydroneopterin aldolase family protein compare
MMP_RS08820 -2.0 -6.6 hypothetical protein compare
MMP_RS02780 -2.0 -7.5 hypothetical protein compare
MMP_RS05550 -2.0 -0.8 cation:proton antiporter compare
MMP_RS01720 -2.0 -2.2 replication factor C large subunit compare
MMP_RS05925 -2.0 -3.5 small nuclear ribonucleoprotein compare
MMP_RS05285 -2.0 -7.4 MMPL family transporter compare
MMP_RS07710 -2.0 -7.0 cell division protein FtsZ compare
MMP_RS08095 -1.9 -7.6 dethiobiotin synthase compare
MMP_RS07750 -1.9 -4.3 DUF357 domain-containing protein compare
MMP_RS07820 -1.9 -4.5 UPF0104 family protein compare
MMP_RS06840 -1.9 -0.9 DNA-directed RNA polymerase subunit N compare
MMP_RS06120 -1.9 -1.6 UPF0147 family protein compare
MMP_RS03300 -1.8 -0.9 TOBE domain-containing protein compare
MMP_RS01180 -1.8 -1.5 XTP/dITP diphosphatase compare
MMP_RS06355 -1.8 -1.9 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS08100 -1.8 -6.1 8-amino-7-oxononanoate synthase compare
MMP_RS08210 -1.8 -1.8 phosphatidylglycerophosphatase A compare
MMP_RS03095 -1.8 -4.4 diphthine synthase compare
MMP_RS02165 -1.8 -6.6 tRNA-dihydrouridine synthase compare
MMP_RS07535 -1.8 -7.7 4Fe-4S binding protein compare
MMP_RS07955 -1.8 -3.6 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS04900 -1.8 -11.3 hypothetical protein compare
MMP_RS08785 -1.8 -1.2 RNA-protein complex protein Nop10 compare
MMP_RS06900 -1.8 -3.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS05515 -1.8 -2.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06395 -1.7 -3.1 ThiF family adenylyltransferase compare
MMP_RS06670 -1.7 -4.3 glucose-6-phosphate isomerase compare
MMP_RS00035 -1.7 -5.2 DUF2098 family protein compare
MMP_RS03420 -1.7 -2.7 acetolactate synthase small subunit compare
MMP_RS05640 -1.7 -4.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05765 -1.7 -2.6 M42 family metallopeptidase compare
MMP_RS03475 -1.7 -0.6 hypothetical protein compare
MMP_RS00110 -1.7 -1.9 hypothetical protein compare
MMP_RS02135 -1.7 -3.2 DUF5612 domain-containing protein compare
MMP_RS08570 -1.6 -7.3 coenzyme F420-0:L-glutamate ligase compare
MMP_RS05460 -1.6 -9.1 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS05815 -1.6 -2.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS01900 -1.6 -10.2 hypothetical protein compare
MMP_RS08660 -1.6 -6.6 DHH family phosphoesterase compare
MMP_RS08350 -1.6 -0.9 hypothetical protein compare
MMP_RS01875 -1.6 -7.7 N-acetyltransferase compare
MMP_RS07685 -1.6 -5.8 TIGR01212 family radical SAM protein compare
MMP_RS01700 -1.6 -0.8 dihydroxy-acid dehydratase compare
MMP_RS01885 -1.6 -7.0 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS03520 -1.6 -1.4 YwbE family protein compare
MMP_RS04615 -1.6 -2.8 PDGLE domain-containing protein compare
MMP_RS01195 -1.6 -1.1 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS00520 -1.6 -1.2 RNA polymerase Rpb4 family protein compare
MMP_RS02930 -1.6 -2.9 class I SAM-dependent methyltransferase compare
MMP_RS08745 -1.6 -3.7 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05440 -1.6 -6.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS08105 -1.5 -4.5 6-carboxyhexanoate--CoA ligase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Cytidine across organisms