Experiment set10S128 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM Parabanic Acid

200 most important genes:

  gene name fitness t score description  
MMP_RS03450 -6.2 -3.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS01020 -5.3 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03960 -3.8 -2.7 hypothetical protein compare
MMP_RS01175 -3.5 -9.6 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01500 -3.4 -4.5 CBS domain-containing protein compare
MMP_RS08165 -3.4 -3.0 phosphoglycerate dehydrogenase compare
MMP_RS08720 -3.4 -2.7 4Fe-4S binding protein compare
MMP_RS00040 -3.2 -8.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS02010 -3.1 -13.3 PHP domain-containing protein compare
MMP_RS07345 -3.1 -8.6 glycine synthesis protein GlyXL (from data) compare
MMP_RS02175 -3.1 -1.6 DUF1611 domain-containing protein compare
MMP_RS04900 -3.0 -22.5 hypothetical protein compare
MMP_RS01005 -3.0 -2.4 riboflavin synthase compare
MMP_RS04445 -3.0 -12.3 P-II family nitrogen regulator compare
MMP_RS07845 -2.9 -4.2 LL-diaminopimelate aminotransferase compare
MMP_RS02355 -2.9 -5.5 30S ribosomal protein S27ae compare
MMP_RS05500 -2.9 -9.1 2-isopropylmalate synthase compare
MMP_RS07365 -2.9 -12.6 2-phosphoglycerate kinase compare
MMP_RS02675 -2.8 -5.7 hypothetical protein compare
MMP_RS03035 -2.8 -5.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01455 -2.8 -9.0 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS04455 -2.8 -19.6 nitrogenase subunit alpha compare
MMP_RS06475 -2.7 -8.2 FAD-dependent oxidoreductase compare
MMP_RS00555 -2.7 -10.8 MFS transporter compare
MMP_RS04450 -2.7 -14.4 P-II family nitrogen regulator compare
MMP_RS04470 -2.7 -19.5 nitrogenase compare
MMP_RS07635 -2.7 -8.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02670 -2.7 -14.3 ATP-binding cassette domain-containing protein compare
MMP_RS04890 -2.7 -1.8 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07075 -2.7 -6.8 phosphomannomutase/phosphoglucomutase compare
MMP_RS06400 -2.7 -3.2 4Fe-4S binding protein compare
MMP_RS02685 -2.7 -11.9 molybdate ABC transporter substrate-binding protein compare
MMP_RS01325 -2.7 -3.8 dihydroneopterin aldolase family protein compare
MMP_RS01800 -2.7 -5.0 TIGR00303 family protein compare
MMP_RS03700 -2.6 -10.5 sodium:proton antiporter compare
MMP_RS07185 -2.6 -16.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04465 -2.6 -18.3 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS08635 -2.6 -2.7 UbiA family prenyltransferase compare
MMP_RS04460 -2.6 -18.9 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS00455 -2.6 -11.1 orotate phosphoribosyltransferase-like protein compare
MMP_RS02145 -2.6 -10.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS06285 -2.5 -3.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06120 -2.5 -2.6 UPF0147 family protein compare
MMP_RS02680 -2.5 -9.9 ABC transporter permease compare
MMP_RS00915 -2.5 -10.0 DUF116 domain-containing protein compare
MMP_RS04440 -2.5 -12.4 nitrogenase iron protein compare
MMP_RS04215 -2.5 -9.8 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS04710 -2.4 -2.8 hypothetical protein compare
MMP_RS02245 -2.4 -5.1 hypothetical protein compare
MMP_RS00520 -2.4 -3.3 RNA polymerase Rpb4 family protein compare
MMP_RS01220 -2.4 -9.0 hypothetical protein compare
MMP_RS07525 -2.4 -8.2 4Fe-4S binding protein compare
MMP_RS08650 -2.4 -4.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS05920 -2.4 -0.8 50S ribosomal protein L37e compare
MMP_RS07435 -2.3 -3.0 GMP synthase subunit A compare
MMP_RS03315 -2.3 -2.2 ferrous iron transport protein A compare
MMP_RS01380 -2.3 -5.4 PHP domain-containing protein compare
MMP_RS01385 -2.3 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07355 -2.3 -1.3 transcription factor S compare
MMP_RS00300 -2.3 -1.1 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05930 -2.3 -3.4 3-isopropylmalate dehydratase large subunit compare
MMP_RS07695 -2.3 -9.5 DUF3236 domain-containing protein compare
MMP_RS06895 -2.3 -2.8 selenocysteine-specific translation elongation factor compare
MMP_RS07545 -2.3 -1.3 HTH domain-containing protein compare
MMP_RS08435 -2.2 -3.5 Era-like GTP-binding protein compare
MMP_RS06975 -2.2 -3.1 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS08645 -2.2 -9.5 UPF0179 family protein compare
MMP_RS01830 -2.2 -2.3 tRNA-Val compare
MMP_RS06670 -2.2 -5.3 glucose-6-phosphate isomerase compare
MMP_RS06270 -2.2 -4.6 TIGR00300 family protein compare
MMP_RS06725 -2.2 -12.5 hypothetical protein compare
MMP_RS02730 -2.2 -9.4 ModD protein compare
MMP_RS06375 -2.2 -6.3 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07605 -2.2 -6.0 diadenylate cyclase compare
MMP_RS01225 -2.1 -6.2 DUF5379 domain-containing protein compare
MMP_RS05640 -2.1 -8.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS03025 -2.1 -7.2 molybdenum cofactor guanylyltransferase compare
MMP_RS07730 -2.1 -2.5 pyruvate synthase subunit beta compare
MMP_RS03580 -2.1 -5.4 signal recognition particle-docking protein FtsY compare
MMP_RS05250 -2.1 -2.2 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00310 -2.1 -10.3 CBS domain-containing protein compare
MMP_RS00685 -2.1 -4.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06625 -2.1 -2.9 DNA primase compare
MMP_RS01925 -2.1 -10.2 DUF1616 domain-containing protein compare
MMP_RS01725 -2.0 -4.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS01265 -2.0 -2.9 hypothetical protein compare
MMP_RS01665 -2.0 -4.0 DUF2111 domain-containing protein compare
MMP_RS04955 -2.0 -7.8 DNA topoisomerase I compare
MMP_RS06295 -2.0 -8.5 methanogenesis marker 14 protein compare
MMP_RS00725 -2.0 -10.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS07090 -2.0 -10.4 tRNA (adenine-N1)-methyltransferase compare
MMP_RS02240 -2.0 -2.5 methanogenesis marker 7 protein compare
MMP_RS03435 -1.9 -2.4 ketol-acid reductoisomerase compare
MMP_RS04850 -1.9 -15.5 UPF0254 family protein compare
MMP_RS08210 -1.9 -2.6 phosphatidylglycerophosphatase A compare
MMP_RS00735 -1.9 -5.3 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS07200 -1.9 -6.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS04585 -1.9 -11.2 AIR synthase related protein compare
MMP_RS00730 -1.9 -7.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS01610 -1.9 -4.7 hypothetical protein compare
MMP_RS08715 -1.9 -2.3 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04790 -1.8 -9.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01900 -1.8 -13.4 hypothetical protein compare
MMP_RS08195 -1.8 -10.5 hypothetical protein compare
MMP_RS07700 -1.8 -11.0 DUF1188 domain-containing protein compare
MMP_RS07445 -1.8 -7.7 helix-turn-helix domain-containing protein compare
MMP_RS03600 -1.8 -1.9 triose-phosphate isomerase compare
MMP_RS06855 -1.8 -7.5 hypothetical protein compare
MMP_RS01905 -1.8 -12.3 glycosyltransferase compare
MMP_RS01795 -1.7 -2.2 methanogenesis marker 6 protein compare
MMP_RS07420 -1.7 -5.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS08860 -1.7 -4.1 MinD/ParA family protein compare
MMP_RS05280 -1.7 -9.7 COG1361 S-layer family protein compare
MMP_RS09020 -1.6 -1.6 hypothetical protein compare
MMP_RS01875 -1.6 -9.7 N-acetyltransferase compare
MMP_RS05460 -1.6 -10.1 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS08705 -1.6 -5.6 sulfopyruvate decarboxylase subunit beta compare
MMP_RS05430 -1.6 -7.6 TIGR00288 family NYN domain-containing protein compare
MMP_RS06395 -1.6 -2.8 ThiF family adenylyltransferase compare
MMP_RS00315 -1.6 -7.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS01880 -1.6 -6.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08570 -1.6 -8.0 coenzyme F420-0:L-glutamate ligase compare
MMP_RS07820 -1.6 -4.4 UPF0104 family protein compare
MMP_RS00695 -1.6 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS00810 -1.6 -6.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01915 -1.6 -11.4 DUF354 domain-containing protein compare
MMP_RS03205 -1.6 -2.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS07710 -1.6 -7.2 cell division protein FtsZ compare
MMP_RS02345 -1.6 -4.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS00305 -1.6 -1.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS06940 -1.6 -3.4 polyprenyl diphosphate synthase compare
MMP_RS05425 -1.5 -5.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS08500 -1.5 -4.0 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS05295 -1.5 -9.2 minichromosome maintenance protein MCM compare
MMP_RS00320 -1.5 -1.9 class I SAM-dependent methyltransferase compare
MMP_RS01885 -1.4 -6.7 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07380 -1.4 -1.7 transcription elongation factor Spt5 compare
MMP_RS05535 -1.4 -4.5 hypothetical protein compare
MMP_RS02190 -1.4 -4.1 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01445 -1.4 -4.7 hypothetical protein compare
MMP_RS06230 -1.4 -2.9 helix-turn-helix domain-containing protein compare
MMP_RS02340 -1.4 -2.2 DNA-directed RNA polymerase subunit E'' compare
MMP_RS00750 -1.4 -1.9 fumarate hydratase compare
MMP_RS01895 -1.4 -9.2 flippase compare
MMP_RS02195 -1.4 -3.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS02165 -1.4 -7.9 tRNA-dihydrouridine synthase compare
MMP_RS07875 -1.4 -4.8 hypothetical protein compare
MMP_RS04780 -1.3 -3.1 ribonuclease P compare
MMP_RS05265 -1.3 -2.0 2-isopropylmalate synthase compare
MMP_RS01975 -1.3 -10.5 hypothetical protein compare
MMP_RS06980 -1.3 -6.3 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01775 -1.3 -1.8 TIGR00297 family protein compare
MMP_RS07555 -1.3 -1.1 monovalent cation/H+ antiporter subunit E compare
MMP_RS00985 -1.3 -4.1 CDC48 family AAA ATPase compare
MMP_RS08155 -1.3 -6.7 hypothetical protein compare
MMP_RS07575 -1.3 -2.9 RNA ligase partner protein compare
MMP_RS05550 -1.3 -0.9 cation:proton antiporter compare
MMP_RS03110 -1.3 -5.2 glycosyltransferase family 2 protein compare
MMP_RS04685 -1.3 -3.2 DUF126 domain-containing protein compare
MMP_RS00515 -1.3 -1.0 DUF655 domain-containing protein compare
MMP_RS01970 -1.2 -8.9 TIGR04279 domain-containing protein compare
MMP_RS01910 -1.2 -7.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS03485 -1.2 -5.1 TIGR00267 family protein compare
MMP_RS01545 -1.2 -1.2 CBS domain-containing protein compare
MMP_RS06020 -1.2 -3.8 archaeoflavoprotein AfpA compare
MMP_RS03420 -1.2 -4.1 acetolactate synthase small subunit compare
MMP_RS05540 -1.2 -3.0 hypothetical protein compare
MMP_RS01755 -1.2 -1.4 DUF2097 domain-containing protein compare
MMP_RS01370 -1.2 -7.9 acetate--CoA ligase family protein compare
MMP_RS08660 -1.2 -5.2 DHH family phosphoesterase compare
MMP_RS00900 -1.2 -1.4 50S ribosomal protein L39e compare
MMP_RS03440 -1.2 -1.4 MoaD/ThiS family protein compare
MMP_RS03445 -1.2 -1.1 methanogenesis marker 17 protein compare
MMP_RS08460 -1.2 -1.8 proteasome-activating nucleotidase compare
MMP_RS02780 -1.2 -6.0 hypothetical protein compare
MMP_RS02955 -1.2 -3.1 DJ-1/PfpI family protein compare
MMP_RS06315 -1.2 -1.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08350 -1.2 -1.1 hypothetical protein compare
MMP_RS00720 -1.2 -4.7 metal-dependent hydrolase compare
MMP_RS08790 -1.2 -1.6 translation initiation factor IF-2 subunit alpha compare
MMP_RS06105 -1.2 -5.7 hydrogenase maturation peptidase HycI compare
MMP_RS05925 -1.1 -3.0 small nuclear ribonucleoprotein compare
MMP_RS04090 -1.1 -2.7 hypothetical protein compare
MMP_RS05285 -1.1 -5.0 MMPL family transporter compare
MMP_RS01650 -1.1 -1.2 sulfurtransferase TusA family protein compare
MMP_RS06865 -1.1 -1.6 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS01180 -1.1 -1.4 XTP/dITP diphosphatase compare
MMP_RS01955 -1.1 -3.6 hypothetical protein compare
MMP_RS07725 -1.1 -2.6 4Fe-4S dicluster domain-containing protein compare
MMP_RS07600 -1.1 -2.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS05255 -1.1 -7.6 CBS domain-containing protein compare
MMP_RS08440 -1.1 -2.6 cell division protein SepF compare
MMP_RS07750 -1.1 -3.9 DUF357 domain-containing protein compare
MMP_RS00035 -1.1 -4.5 DUF2098 family protein compare
MMP_RS09035 -1.1 -4.4 hypothetical protein compare
MMP_RS07390 -1.1 -1.9 cell division protein FtsZ compare
MMP_RS02280 -1.1 -0.9 DUF211 domain-containing protein compare
MMP_RS02135 -1.1 -3.6 DUF5612 domain-containing protein compare
MMP_RS06310 -1.1 -3.6 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS01920 -1.1 -7.9 glycosyltransferase family 2 protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Parabanic Acid in Methanococcus maripaludis S2

For nitrogen source Parabanic Acid across organisms