Experiment set10S116 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM L-Tryptophan

200 most important genes:

  gene name fitness t score description  
MMP_RS01020 -6.2 -1.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03960 -5.2 -1.8 hypothetical protein compare
MMP_RS08720 -5.2 -1.8 4Fe-4S binding protein compare
MMP_RS06400 -4.8 -2.4 4Fe-4S binding protein compare
MMP_RS04445 -4.4 -10.8 P-II family nitrogen regulator compare
MMP_RS01325 -4.4 -3.1 dihydroneopterin aldolase family protein compare
MMP_RS03450 -4.4 -3.4 glycine synthesis protein GlyXS (from data) compare
MMP_RS01500 -4.0 -3.6 CBS domain-containing protein compare
MMP_RS04450 -4.0 -16.2 P-II family nitrogen regulator compare
MMP_RS04470 -4.0 -21.4 nitrogenase compare
MMP_RS02675 -3.9 -4.7 hypothetical protein compare
MMP_RS02240 -3.9 -4.4 methanogenesis marker 7 protein compare
MMP_RS04460 -3.9 -24.3 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS04465 -3.9 -19.4 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS02010 -3.9 -15.1 PHP domain-containing protein compare
MMP_RS04455 -3.8 -23.5 nitrogenase subunit alpha compare
MMP_RS04440 -3.8 -12.7 nitrogenase iron protein compare
MMP_RS06315 -3.7 -0.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07345 -3.7 -7.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS01175 -3.7 -5.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07355 -3.6 -1.1 transcription factor S compare
MMP_RS02685 -3.6 -16.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS07845 -3.6 -2.8 LL-diaminopimelate aminotransferase compare
MMP_RS06120 -3.5 -3.1 UPF0147 family protein compare
MMP_RS00455 -3.5 -14.4 orotate phosphoribosyltransferase-like protein compare
MMP_RS08165 -3.5 -3.5 phosphoglycerate dehydrogenase compare
MMP_RS07755 -3.5 -1.7 DUF555 domain-containing protein compare
MMP_RS01385 -3.5 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06625 -3.5 -2.5 DNA primase compare
MMP_RS02680 -3.4 -8.1 ABC transporter permease compare
MMP_RS00915 -3.4 -10.4 DUF116 domain-containing protein compare
MMP_RS08860 -3.4 -7.0 MinD/ParA family protein compare
MMP_RS02670 -3.4 -15.0 ATP-binding cassette domain-containing protein compare
MMP_RS01800 -3.3 -5.3 TIGR00303 family protein compare
MMP_RS03315 -3.3 -2.0 ferrous iron transport protein A compare
MMP_RS00555 -3.3 -8.8 MFS transporter compare
MMP_RS02145 -3.3 -12.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS07605 -3.2 -5.5 diadenylate cyclase compare
MMP_RS01455 -3.2 -8.1 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01225 -3.2 -6.2 DUF5379 domain-containing protein compare
MMP_RS00040 -3.2 -7.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS04215 -3.2 -10.7 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS07730 -3.2 -2.6 pyruvate synthase subunit beta compare
MMP_RS03640 -3.1 -5.9 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05500 -3.1 -13.2 2-isopropylmalate synthase compare
MMP_RS07635 -3.1 -13.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00300 -3.1 -0.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07005 -3.1 -0.7 4Fe-4S binding protein compare
MMP_RS09020 -3.1 -2.2 hypothetical protein compare
MMP_RS02730 -3.0 -10.0 ModD protein compare
MMP_RS02900 -3.0 -0.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06895 -3.0 -2.5 selenocysteine-specific translation elongation factor compare
MMP_RS01725 -3.0 -5.5 class I SAM-dependent methyltransferase family protein compare
MMP_RS06475 -2.9 -6.0 FAD-dependent oxidoreductase compare
MMP_RS06395 -2.9 -3.5 ThiF family adenylyltransferase compare
MMP_RS07365 -2.9 -14.5 2-phosphoglycerate kinase compare
MMP_RS07185 -2.9 -14.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS07525 -2.9 -10.8 4Fe-4S binding protein compare
MMP_RS00750 -2.8 -2.9 fumarate hydratase compare
MMP_RS07380 -2.8 -2.2 transcription elongation factor Spt5 compare
MMP_RS08645 -2.8 -9.1 UPF0179 family protein compare
MMP_RS04710 -2.8 -2.6 hypothetical protein compare
MMP_RS00310 -2.8 -10.7 CBS domain-containing protein compare
MMP_RS07695 -2.8 -8.1 DUF3236 domain-containing protein compare
MMP_RS04585 -2.8 -13.6 AIR synthase related protein compare
MMP_RS06630 -2.7 -1.1 UPF0058 family protein compare
MMP_RS01960 -2.7 -1.1 hypothetical protein compare
MMP_RS08650 -2.7 -3.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS04900 -2.7 -19.6 hypothetical protein compare
MMP_RS00985 -2.7 -5.7 CDC48 family AAA ATPase compare
MMP_RS03700 -2.7 -11.3 sodium:proton antiporter compare
MMP_RS06855 -2.7 -10.8 hypothetical protein compare
MMP_RS07445 -2.7 -9.5 helix-turn-helix domain-containing protein compare
MMP_RS02800 -2.7 -8.8 nucleotidyltransferase domain-containing protein compare
MMP_RS06375 -2.7 -7.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS02245 -2.7 -4.1 hypothetical protein compare
MMP_RS06285 -2.6 -3.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07600 -2.6 -2.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08785 -2.6 -1.5 RNA-protein complex protein Nop10 compare
MMP_RS06270 -2.6 -6.8 TIGR00300 family protein compare
MMP_RS01795 -2.5 -1.6 methanogenesis marker 6 protein compare
MMP_RS03435 -2.5 -2.7 ketol-acid reductoisomerase compare
MMP_RS08300 -2.5 -1.2 metal-sulfur cluster assembly factor compare
MMP_RS03035 -2.5 -4.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS03025 -2.5 -6.5 molybdenum cofactor guanylyltransferase compare
MMP_RS02355 -2.5 -4.0 30S ribosomal protein S27ae compare
MMP_RS07955 -2.5 -5.1 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02340 -2.5 -2.9 DNA-directed RNA polymerase subunit E'' compare
MMP_RS00685 -2.5 -5.0 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06295 -2.5 -6.8 methanogenesis marker 14 protein compare
MMP_RS01755 -2.5 -1.6 DUF2097 domain-containing protein compare
MMP_RS00735 -2.5 -3.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS01610 -2.5 -4.7 hypothetical protein compare
MMP_RS08820 -2.5 -6.3 hypothetical protein compare
MMP_RS03110 -2.4 -7.6 glycosyltransferase family 2 protein compare
MMP_RS04850 -2.4 -16.6 UPF0254 family protein compare
MMP_RS06725 -2.4 -11.4 hypothetical protein compare
MMP_RS00730 -2.4 -6.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS03580 -2.4 -3.1 signal recognition particle-docking protein FtsY compare
MMP_RS01830 -2.4 -2.3 tRNA-Val compare
MMP_RS08715 -2.4 -2.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03420 -2.4 -3.7 acetolactate synthase small subunit compare
MMP_RS08210 -2.3 -2.8 phosphatidylglycerophosphatase A compare
MMP_RS07075 -2.3 -5.9 phosphomannomutase/phosphoglucomutase compare
MMP_RS05430 -2.3 -6.6 TIGR00288 family NYN domain-containing protein compare
MMP_RS00725 -2.3 -9.6 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS06730 -2.2 -2.0 phosphopantothenate/pantothenate synthetase compare
MMP_RS08500 -2.2 -4.9 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS08705 -2.2 -6.2 sulfopyruvate decarboxylase subunit beta compare
MMP_RS07700 -2.2 -10.7 DUF1188 domain-containing protein compare
MMP_RS01445 -2.2 -7.5 hypothetical protein compare
MMP_RS05845 -2.2 -1.9 tRNA-intron lyase compare
MMP_RS01875 -2.2 -10.2 N-acetyltransferase compare
MMP_RS00810 -2.2 -8.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07575 -2.2 -3.4 RNA ligase partner protein compare
MMP_RS01700 -2.2 -0.8 dihydroxy-acid dehydratase compare
MMP_RS00115 -2.2 -11.9 radical SAM protein compare
MMP_RS02165 -2.2 -7.7 tRNA-dihydrouridine synthase compare
MMP_RS07750 -2.2 -4.2 DUF357 domain-containing protein compare
MMP_RS06020 -2.2 -5.7 archaeoflavoprotein AfpA compare
MMP_RS04955 -2.1 -6.1 DNA topoisomerase I compare
MMP_RS03445 -2.1 -1.2 methanogenesis marker 17 protein compare
MMP_RS01220 -2.1 -8.9 hypothetical protein compare
MMP_RS04890 -2.1 -1.3 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02195 -2.1 -3.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS00320 -2.1 -2.1 class I SAM-dependent methyltransferase compare
MMP_RS05640 -2.1 -8.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS03090 -2.0 -7.4 cation:proton antiporter compare
MMP_RS05925 -2.0 -5.0 small nuclear ribonucleoprotein compare
MMP_RS01005 -2.0 -1.5 riboflavin synthase compare
MMP_RS08440 -2.0 -3.2 cell division protein SepF compare
MMP_RS01925 -1.9 -8.8 DUF1616 domain-containing protein compare
MMP_RS05930 -1.9 -2.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS05920 -1.9 -0.6 50S ribosomal protein L37e compare
MMP_RS07390 -1.9 -2.4 cell division protein FtsZ compare
MMP_RS03600 -1.9 -2.3 triose-phosphate isomerase compare
MMP_RS07200 -1.9 -5.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02175 -1.9 -1.1 DUF1611 domain-containing protein compare
MMP_RS06840 -1.9 -1.0 DNA-directed RNA polymerase subunit N compare
MMP_RS01885 -1.9 -11.1 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS01380 -1.9 -6.3 PHP domain-containing protein compare
MMP_RS05540 -1.9 -3.0 hypothetical protein compare
MMP_RS08195 -1.9 -8.9 hypothetical protein compare
MMP_RS04720 -1.9 -3.2 DedA family protein compare
MMP_RS04780 -1.9 -3.4 ribonuclease P compare
MMP_RS01880 -1.8 -8.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS00305 -1.8 -1.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS06175 -1.8 -6.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS05425 -1.8 -5.2 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS08635 -1.8 -2.2 UbiA family prenyltransferase compare
MMP_RS08595 -1.8 -1.4 flagellar protein C compare
MMP_RS07435 -1.8 -1.6 GMP synthase subunit A compare
MMP_RS04090 -1.8 -2.4 hypothetical protein compare
MMP_RS02780 -1.8 -6.4 hypothetical protein compare
MMP_RS08155 -1.8 -7.0 hypothetical protein compare
MMP_RS08855 -1.8 -7.7 hypothetical protein compare
MMP_RS02135 -1.8 -4.4 DUF5612 domain-containing protein compare
MMP_RS06355 -1.8 -1.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS08435 -1.7 -2.4 Era-like GTP-binding protein compare
MMP_RS04790 -1.7 -9.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS04870 -1.7 -4.7 TIGR02253 family HAD-type hydrolase compare
MMP_RS06670 -1.7 -4.8 glucose-6-phosphate isomerase compare
MMP_RS08660 -1.7 -7.3 DHH family phosphoesterase compare
MMP_RS07090 -1.7 -7.3 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06105 -1.7 -5.7 hydrogenase maturation peptidase HycI compare
MMP_RS04685 -1.7 -2.9 DUF126 domain-containing protein compare
MMP_RS07535 -1.7 -8.1 4Fe-4S binding protein compare
MMP_RS01900 -1.7 -10.4 hypothetical protein compare
MMP_RS04500 -1.7 -10.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05535 -1.7 -4.6 hypothetical protein compare
MMP_RS05345 -1.7 -6.2 hypothetical protein compare
MMP_RS01890 -1.6 -4.7 nucleotide sugar dehydrogenase compare
MMP_RS04615 -1.6 -2.6 PDGLE domain-containing protein compare
MMP_RS07555 -1.6 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS06370 -1.6 -4.2 biotin synthase BioB compare
MMP_RS00515 -1.6 -0.9 DUF655 domain-containing protein compare
MMP_RS06350 -1.6 -3.8 HesA/MoeB/ThiF family protein compare
MMP_RS00315 -1.6 -5.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS00895 -1.5 -2.8 hypothetical protein compare
MMP_RS01265 -1.5 -2.2 hypothetical protein compare
MMP_RS07735 -1.5 -0.5 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS03205 -1.5 -1.6 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01665 -1.5 -1.9 DUF2111 domain-containing protein compare
MMP_RS08095 -1.5 -6.1 dethiobiotin synthase compare
MMP_RS02190 -1.5 -2.7 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS03485 -1.4 -4.0 TIGR00267 family protein compare
MMP_RS07530 -1.4 -6.5 4Fe-4S binding protein compare
MMP_RS03385 -1.4 -1.2 cation diffusion facilitator family transporter compare
MMP_RS03440 -1.4 -1.2 MoaD/ThiS family protein compare
MMP_RS07710 -1.4 -5.8 cell division protein FtsZ compare
MMP_RS03535 -1.4 -2.9 helix-turn-helix transcriptional regulator compare
MMP_RS07875 -1.4 -4.5 hypothetical protein compare
MMP_RS00035 -1.4 -4.3 DUF2098 family protein compare
MMP_RS03305 -1.4 -5.8 winged helix-turn-helix domain-containing protein compare
MMP_RS01375 -1.4 -9.2 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
MMP_RS01775 -1.3 -1.6 TIGR00297 family protein compare
MMP_RS07685 -1.3 -5.7 TIGR01212 family radical SAM protein compare
MMP_RS01600 -1.3 -2.0 50S ribosomal protein L15e compare
MMP_RS05555 -1.3 -1.2 DUF4040 domain-containing protein compare
MMP_RS03475 -1.3 -0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source L-Tryptophan across organisms