Experiment set10S110 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM L-Valine

200 most important genes:

  gene name fitness t score description  
MMP_RS06625 -7.5 -2.2 DNA primase compare
MMP_RS03315 -5.8 -1.5 ferrous iron transport protein A compare
MMP_RS02675 -5.6 -3.8 hypothetical protein compare
MMP_RS03435 -5.4 -2.2 ketol-acid reductoisomerase compare
MMP_RS00555 -5.3 -9.3 MFS transporter compare
MMP_RS01175 -5.2 -5.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01500 -5.1 -3.3 CBS domain-containing protein compare
MMP_RS03960 -5.0 -1.7 hypothetical protein compare
MMP_RS06120 -4.9 -2.9 UPF0147 family protein compare
MMP_RS07345 -4.9 -8.9 glycine synthesis protein GlyXL (from data) compare
MMP_RS08715 -4.8 -2.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08165 -4.7 -3.1 phosphoglycerate dehydrogenase compare
MMP_RS04440 -4.6 -12.5 nitrogenase iron protein compare
MMP_RS04445 -4.6 -9.8 P-II family nitrogen regulator compare
MMP_RS00985 -4.5 -6.1 CDC48 family AAA ATPase compare
MMP_RS04465 -4.5 -20.1 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS01225 -4.5 -7.0 DUF5379 domain-containing protein compare
MMP_RS04460 -4.5 -22.8 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS04455 -4.5 -23.5 nitrogenase subunit alpha compare
MMP_RS04470 -4.4 -19.8 nitrogenase compare
MMP_RS03445 -4.4 -1.1 methanogenesis marker 17 protein compare
MMP_RS02685 -4.4 -14.5 molybdate ABC transporter substrate-binding protein compare
MMP_RS04450 -4.3 -13.2 P-II family nitrogen regulator compare
MMP_RS07845 -4.3 -2.3 LL-diaminopimelate aminotransferase compare
MMP_RS02670 -4.2 -14.8 ATP-binding cassette domain-containing protein compare
MMP_RS02010 -4.2 -13.1 PHP domain-containing protein compare
MMP_RS02730 -4.2 -12.4 ModD protein compare
MMP_RS02900 -4.1 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS02245 -4.1 -3.9 hypothetical protein compare
MMP_RS07525 -4.1 -11.5 4Fe-4S binding protein compare
MMP_RS05920 -4.0 -0.6 50S ribosomal protein L37e compare
MMP_RS08435 -4.0 -3.2 Era-like GTP-binding protein compare
MMP_RS00750 -4.0 -2.4 fumarate hydratase compare
MMP_RS05500 -3.9 -9.7 2-isopropylmalate synthase compare
MMP_RS07605 -3.9 -4.1 diadenylate cyclase compare
MMP_RS07635 -3.9 -10.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02355 -3.9 -3.8 30S ribosomal protein S27ae compare
MMP_RS01020 -3.8 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01610 -3.8 -3.8 hypothetical protein compare
MMP_RS06315 -3.8 -0.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07185 -3.8 -15.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS07730 -3.8 -2.3 pyruvate synthase subunit beta compare
MMP_RS02680 -3.7 -9.2 ABC transporter permease compare
MMP_RS02145 -3.7 -11.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS03700 -3.7 -11.6 sodium:proton antiporter compare
MMP_RS08860 -3.7 -7.2 MinD/ParA family protein compare
MMP_RS04585 -3.7 -14.7 AIR synthase related protein compare
MMP_RS01385 -3.6 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00455 -3.6 -9.5 orotate phosphoribosyltransferase-like protein compare
MMP_RS00310 -3.6 -12.5 CBS domain-containing protein compare
MMP_RS01455 -3.6 -8.7 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01725 -3.5 -5.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS06475 -3.5 -5.5 FAD-dependent oxidoreductase compare
MMP_RS08720 -3.4 -2.0 4Fe-4S binding protein compare
MMP_RS04685 -3.4 -3.9 DUF126 domain-containing protein compare
MMP_RS06895 -3.4 -2.4 selenocysteine-specific translation elongation factor compare
MMP_RS07445 -3.4 -6.9 helix-turn-helix domain-containing protein compare
MMP_RS00915 -3.4 -6.0 DUF116 domain-containing protein compare
MMP_RS01220 -3.4 -10.9 hypothetical protein compare
MMP_RS06400 -3.4 -1.8 4Fe-4S binding protein compare
MMP_RS08790 -3.4 -2.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS00040 -3.3 -5.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS03035 -3.3 -5.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04780 -3.3 -4.9 ribonuclease P compare
MMP_RS04710 -3.3 -2.3 hypothetical protein compare
MMP_RS08650 -3.3 -4.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06270 -3.2 -6.5 TIGR00300 family protein compare
MMP_RS05925 -3.2 -3.7 small nuclear ribonucleoprotein compare
MMP_RS00685 -3.2 -5.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06295 -3.2 -10.0 methanogenesis marker 14 protein compare
MMP_RS01545 -3.2 -1.2 CBS domain-containing protein compare
MMP_RS02240 -3.2 -3.5 methanogenesis marker 7 protein compare
MMP_RS01830 -3.2 -2.0 tRNA-Val compare
MMP_RS08645 -3.2 -8.9 UPF0179 family protein compare
MMP_RS06285 -3.2 -3.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07365 -3.1 -15.5 2-phosphoglycerate kinase compare
MMP_RS08500 -3.0 -7.9 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS03025 -3.0 -8.1 molybdenum cofactor guanylyltransferase compare
MMP_RS04090 -3.0 -3.5 hypothetical protein compare
MMP_RS06020 -3.0 -4.8 archaeoflavoprotein AfpA compare
MMP_RS03475 -3.0 -0.7 hypothetical protein compare
MMP_RS07955 -3.0 -7.5 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS07390 -3.0 -2.8 cell division protein FtsZ compare
MMP_RS02800 -2.9 -11.4 nucleotidyltransferase domain-containing protein compare
MMP_RS07380 -2.9 -2.4 transcription elongation factor Spt5 compare
MMP_RS00300 -2.9 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03110 -2.8 -8.0 glycosyltransferase family 2 protein compare
MMP_RS05930 -2.8 -3.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS06975 -2.8 -2.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS05550 -2.8 -0.9 cation:proton antiporter compare
MMP_RS05845 -2.8 -1.9 tRNA-intron lyase compare
MMP_RS07355 -2.8 -1.0 transcription factor S compare
MMP_RS03450 -2.8 -2.5 glycine synthesis protein GlyXS (from data) compare
MMP_RS04900 -2.8 -17.9 hypothetical protein compare
MMP_RS06725 -2.8 -13.9 hypothetical protein compare
MMP_RS02195 -2.8 -5.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01880 -2.7 -9.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS03600 -2.7 -2.1 triose-phosphate isomerase compare
MMP_RS06855 -2.7 -10.4 hypothetical protein compare
MMP_RS06350 -2.7 -6.2 HesA/MoeB/ThiF family protein compare
MMP_RS01325 -2.7 -2.9 dihydroneopterin aldolase family protein compare
MMP_RS05430 -2.7 -5.4 TIGR00288 family NYN domain-containing protein compare
MMP_RS01800 -2.7 -5.6 TIGR00303 family protein compare
MMP_RS01755 -2.7 -1.1 DUF2097 domain-containing protein compare
MMP_RS00810 -2.6 -9.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03580 -2.6 -3.6 signal recognition particle-docking protein FtsY compare
MMP_RS06375 -2.5 -3.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07075 -2.5 -5.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS04215 -2.5 -4.6 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01875 -2.5 -13.0 N-acetyltransferase compare
MMP_RS04615 -2.5 -3.8 PDGLE domain-containing protein compare
MMP_RS03205 -2.5 -2.0 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01265 -2.5 -2.3 hypothetical protein compare
MMP_RS08440 -2.5 -3.8 cell division protein SepF compare
MMP_RS04790 -2.5 -11.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS06355 -2.5 -2.3 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS08210 -2.4 -2.2 phosphatidylglycerophosphatase A compare
MMP_RS04870 -2.4 -4.8 TIGR02253 family HAD-type hydrolase compare
MMP_RS08195 -2.4 -8.8 hypothetical protein compare
MMP_RS06230 -2.4 -2.8 helix-turn-helix domain-containing protein compare
MMP_RS03640 -2.4 -3.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08155 -2.4 -8.6 hypothetical protein compare
MMP_RS06885 -2.4 -2.6 50S ribosome-binding GTPase compare
MMP_RS07200 -2.4 -6.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08300 -2.4 -1.1 metal-sulfur cluster assembly factor compare
MMP_RS01700 -2.3 -0.8 dihydroxy-acid dehydratase compare
MMP_RS01795 -2.3 -1.5 methanogenesis marker 6 protein compare
MMP_RS07710 -2.3 -7.2 cell division protein FtsZ compare
MMP_RS08635 -2.3 -2.1 UbiA family prenyltransferase compare
MMP_RS08820 -2.3 -6.3 hypothetical protein compare
MMP_RS08095 -2.3 -8.1 dethiobiotin synthase compare
MMP_RS07535 -2.3 -8.9 4Fe-4S binding protein compare
MMP_RS07435 -2.3 -1.6 GMP synthase subunit A compare
MMP_RS01885 -2.3 -8.1 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06370 -2.3 -5.2 biotin synthase BioB compare
MMP_RS01380 -2.2 -4.5 PHP domain-containing protein compare
MMP_RS00115 -2.2 -13.3 radical SAM protein compare
MMP_RS04605 -2.2 -3.8 cobalt ECF transporter T component CbiQ compare
MMP_RS05265 -2.2 -2.4 2-isopropylmalate synthase compare
MMP_RS06925 -2.2 -2.7 ribonuclease VapC4 compare
MMP_RS01085 -2.2 -2.2 hypothetical protein compare
MMP_RS07750 -2.1 -4.4 DUF357 domain-containing protein compare
MMP_RS01195 -2.1 -1.3 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS04500 -2.1 -12.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08705 -2.1 -5.9 sulfopyruvate decarboxylase subunit beta compare
MMP_RS05345 -2.1 -6.7 hypothetical protein compare
MMP_RS02175 -2.1 -1.0 DUF1611 domain-containing protein compare
MMP_RS05540 -2.1 -2.6 hypothetical protein compare
MMP_RS07700 -2.1 -9.0 DUF1188 domain-containing protein compare
MMP_RS07600 -2.1 -2.4 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS09020 -2.1 -1.6 hypothetical protein compare
MMP_RS00725 -2.1 -5.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS05460 -2.1 -9.0 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS07695 -2.0 -6.9 DUF3236 domain-containing protein compare
MMP_RS01005 -2.0 -1.3 riboflavin synthase compare
MMP_RS03090 -2.0 -6.6 cation:proton antiporter compare
MMP_RS07545 -2.0 -1.2 HTH domain-containing protein compare
MMP_RS08570 -2.0 -8.7 coenzyme F420-0:L-glutamate ligase compare
MMP_RS02780 -2.0 -6.4 hypothetical protein compare
MMP_RS00730 -2.0 -4.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS02340 -2.0 -1.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS05020 -2.0 -3.5 hypothetical protein compare
MMP_RS04850 -2.0 -13.1 UPF0254 family protein compare
MMP_RS07005 -2.0 -0.6 4Fe-4S binding protein compare
MMP_RS00895 -2.0 -3.8 hypothetical protein compare
MMP_RS08785 -1.9 -1.2 RNA-protein complex protein Nop10 compare
MMP_RS00515 -1.9 -0.9 DUF655 domain-containing protein compare
MMP_RS07685 -1.9 -6.2 TIGR01212 family radical SAM protein compare
MMP_RS08660 -1.9 -10.2 DHH family phosphoesterase compare
MMP_RS01890 -1.9 -6.1 nucleotide sugar dehydrogenase compare
MMP_RS00305 -1.9 -1.4 phosphoribosyl-ATP diphosphatase compare
MMP_RS04890 -1.9 -1.0 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS05535 -1.9 -5.2 hypothetical protein compare
MMP_RS08855 -1.9 -6.7 hypothetical protein compare
MMP_RS06395 -1.9 -3.5 ThiF family adenylyltransferase compare
MMP_RS02135 -1.8 -5.1 DUF5612 domain-containing protein compare
MMP_RS04955 -1.8 -6.0 DNA topoisomerase I compare
MMP_RS01445 -1.8 -5.6 hypothetical protein compare
MMP_RS08330 -1.8 -5.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS01720 -1.8 -1.8 replication factor C large subunit compare
MMP_RS00695 -1.8 -0.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06730 -1.8 -1.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS06105 -1.8 -7.4 hydrogenase maturation peptidase HycI compare
MMP_RS01440 -1.8 -3.2 NAAT family transporter compare
MMP_RS00735 -1.8 -3.5 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS01665 -1.8 -2.1 DUF2111 domain-containing protein compare
MMP_RS02345 -1.8 -3.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS00110 -1.8 -2.3 hypothetical protein compare
MMP_RS06175 -1.7 -3.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS00520 -1.7 -1.7 RNA polymerase Rpb4 family protein compare
MMP_RS06630 -1.7 -0.8 UPF0058 family protein compare
MMP_RS01900 -1.7 -11.2 hypothetical protein compare
MMP_RS02190 -1.7 -2.9 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS00035 -1.7 -4.4 DUF2098 family protein compare
MMP_RS08105 -1.6 -4.0 6-carboxyhexanoate--CoA ligase compare
MMP_RS07575 -1.6 -4.0 RNA ligase partner protein compare
MMP_RS08460 -1.6 -2.5 proteasome-activating nucleotidase compare
MMP_RS07090 -1.6 -6.9 tRNA (adenine-N1)-methyltransferase compare
MMP_RS05295 -1.6 -8.4 minichromosome maintenance protein MCM compare
MMP_RS04720 -1.6 -2.0 DedA family protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Valine in Methanococcus maripaludis S2

For nitrogen source L-Valine across organisms