Experiment set10IT095 for Shewanella oneidensis MR-1

Fumarate, anaerobic, 1G configuration

Group: harv
Media: SBM_defined + Sodium D,L-Lactate (20 mM) + Sodium Fumarate dibasic (40 mM), pH=7.2
Culturing: MR1_ML3b, HARV, Anaerobic, at 30 (C), shaken=30 rpm
By: Michael Dougherty on 26-Jul-17

Specific Phenotypes

For 2 genes in this experiment

For harv Sodium D,L-Lactate in Shewanella oneidensis MR-1

For harv Sodium D,L-Lactate across organisms

SEED Subsystems

Subsystem	#Specific
Glutathione-dependent pathway of formaldehyde detoxification	2

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Methane metabolism
• Glycolysis / Gluconeogenesis
• Fatty acid metabolism
• Glycine, serine and threonine metabolism
• Tyrosine metabolism
• 1- and 2-Methylnaphthalene degradation
• 3-Chloroacrylic acid degradation
• Retinol metabolism
• Metabolism of xenobiotics by cytochrome P450
• Drug metabolism - cytochrome P450

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
acetaldehyde biosynthesis I	1	1	1
formaldehyde oxidation II (glutathione-dependent)	3	3	2
ethanol degradation I	2	2	1
pyruvate fermentation to ethanol II	2	1	1
ethanol degradation II	3	3	1
pyruvate fermentation to ethanol I	3	3	1
pyruvate fermentation to ethanol III	3	2	1
L-isoleucine degradation II	3	2	1
L-valine degradation II	3	2	1
methylglyoxal degradation I	3	2	1
L-leucine degradation III	3	2	1
methylglyoxal degradation VIII	3	2	1
L-methionine degradation III	3	1	1
phytol degradation	4	3	1
L-tyrosine degradation III	4	2	1
L-phenylalanine degradation III	4	2	1
salidroside biosynthesis	4	1	1
ethanolamine utilization	5	4	1
pyruvate fermentation to isobutanol (engineered)	5	4	1
acetylene degradation (anaerobic)	5	4	1
(S)-propane-1,2-diol degradation	5	3	1
protein S-nitrosylation and denitrosylation	5	3	1
phenylethanol biosynthesis	5	1	1
superpathway of C1 compounds oxidation to CO2	12	4	2
noradrenaline and adrenaline degradation	13	4	2
3-methylbutanol biosynthesis (engineered)	7	6	1
serotonin degradation	7	3	1
superpathway of methylglyoxal degradation	8	4	1
butanol and isobutanol biosynthesis (engineered)	8	3	1
superpathway of fermentation (Chlamydomonas reinhardtii)	9	7	1
superpathway of Clostridium acetobutylicum solventogenic fermentation	13	6	1
L-tryptophan degradation V (side chain pathway)	13	1	1
mixed acid fermentation	16	15	1
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation	17	8	1
heterolactic fermentation	18	15	1
superpathway of anaerobic sucrose degradation	19	14	1
hexitol fermentation to lactate, formate, ethanol and acetate	19	14	1
superpathway of N-acetylneuraminate degradation	22	16	1