Experiment set10IT094 for Burkholderia phytofirmans PsJN

Compare to:

Malonic acid carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16835 -5.2 -6.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17685 -5.1 -8.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS01590 -4.9 -4.6 methionine biosynthesis protein MetW compare
BPHYT_RS17690 -4.9 -10.3 imidazole glycerol phosphate synthase compare
BPHYT_RS02610 -4.8 -5.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS18320 -4.8 -11.5 orotate phosphoribosyltransferase compare
BPHYT_RS17400 -4.8 -7.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS33915 -4.7 -7.1 isopropylmalate isomerase compare
BPHYT_RS04720 -4.6 -8.1 transcriptional regulator compare
BPHYT_RS16905 -4.5 -8.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33880 -4.5 -6.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14190 -4.4 -10.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS33875 -4.4 -8.7 tryptophan synthase subunit alpha compare
BPHYT_RS14910 -4.4 -12.9 chorismate mutase compare
BPHYT_RS04725 -4.3 -7.0 sulfite reductase compare
BPHYT_RS15920 -4.2 -10.7 argininosuccinate synthase compare
BPHYT_RS15915 -4.2 -8.8 ornithine carbamoyltransferase compare
BPHYT_RS12530 -4.2 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33835 -4.1 -6.2 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17890 -4.0 -2.6 shikimate kinase compare
BPHYT_RS06555 -4.0 -6.9 ketol-acid reductoisomerase compare
BPHYT_RS16270 -4.0 -4.2 phosphoglycerate kinase compare
BPHYT_RS17680 -4.0 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS33900 -4.0 -7.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS12845 -4.0 -20.5 ATPase compare
BPHYT_RS03150 -3.9 -14.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17855 -3.9 -13.7 glutamate synthase compare
BPHYT_RS17395 -3.8 -2.8 anthranilate synthase subunit II compare
BPHYT_RS07000 -3.8 -16.1 acetyl-CoA synthetase compare
BPHYT_RS17670 -3.8 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33865 -3.7 -7.0 tryptophan synthase alpha chain compare
BPHYT_RS02590 -3.7 -7.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS01595 -3.7 -13.1 homoserine O-acetyltransferase compare
BPHYT_RS09515 -3.7 -2.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS12985 -3.6 -2.4 amino acid acetyltransferase compare
BPHYT_RS06405 -3.6 -8.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS17390 -3.6 -13.1 anthranilate synthase subunit I compare
BPHYT_RS12285 -3.5 -8.6 isocitrate lyase compare
BPHYT_RS17380 -3.4 -12.2 ribulose-phosphate 3-epimerase compare
BPHYT_RS12815 -3.4 -5.1 IclR family transcriptional regulator compare
BPHYT_RS04740 -3.4 -5.5 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS06545 -3.4 -7.9 acetolactate synthase compare
BPHYT_RS33840 -3.4 -9.2 amidophosphoribosyltransferase compare
BPHYT_RS16675 -3.4 -2.3 dihydroorotase compare
BPHYT_RS08565 -3.3 -1.7 dihydroorotate dehydrogenase compare
BPHYT_RS04745 -3.2 -4.3 sulfate adenylyltransferase compare
BPHYT_RS17715 -3.2 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS23935 -3.2 -7.7 malonate decarboxylase subunit alpha conserved
BPHYT_RS04955 -3.2 -2.0 methionyl-tRNA synthetase compare
BPHYT_RS23920 -3.2 -3.1 malonate decarboxylase subunit beta compare
BPHYT_RS09500 -3.1 -8.7 glucose-6-phosphate isomerase compare
BPHYT_RS03640 -3.1 -2.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17885 -3.1 -5.9 3-dehydroquinate synthase compare
BPHYT_RS03535 -3.1 -6.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS13605 -3.1 -1.6 tRNA-Pro compare
BPHYT_RS08960 -3.1 -1.9 threonine synthase compare
BPHYT_RS33645 -3.0 -6.1 homoserine kinase compare
BPHYT_RS23910 -3.0 -3.4 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS04965 -2.9 -9.7 ATP-binding protein compare
BPHYT_RS33920 -2.8 -8.5 type II citrate synthase compare
BPHYT_RS17675 -2.7 -1.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS13705 -2.7 -4.2 chorismate synthase compare
BPHYT_RS14915 -2.7 -6.7 phosphoserine aminotransferase compare
BPHYT_RS16245 -2.7 -5.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS23905 -2.6 -5.6 malonate decarboxylase subunit epsilon conserved
BPHYT_RS23930 -2.6 -2.5 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS08955 -2.6 -3.6 homoserine dehydrogenase compare
BPHYT_RS09355 -2.6 -2.1 LysR family transcriptional regulator compare
BPHYT_RS06610 -2.6 -2.2 triosephosphate isomerase compare
BPHYT_RS27890 -2.6 -0.9 hypothetical protein compare
BPHYT_RS06900 -2.5 -5.2 aspartate aminotransferase compare
BPHYT_RS20790 -2.5 -3.0 TetR family transcriptional regulator compare
BPHYT_RS16255 -2.4 -3.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06685 -2.4 -2.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS30040 -2.4 -1.6 hypothetical protein compare
BPHYT_RS04730 -2.4 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS17405 -2.4 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS17945 -2.3 -2.7 cytochrome C biogenesis protein compare
BPHYT_RS16840 -2.2 -1.5 transketolase compare
BPHYT_RS06530 -2.2 -3.0 membrane protein compare
BPHYT_RS13220 -2.2 -5.9 phosphomethylpyrimidine synthase compare
BPHYT_RS33850 -2.1 -2.7 sporulation protein compare
BPHYT_RS12150 -2.1 -12.8 PII uridylyl-transferase compare
BPHYT_RS10540 -2.1 -2.5 secretion protein compare
BPHYT_RS15650 -2.0 -9.6 quinolinate synthetase compare
BPHYT_RS27175 -2.0 -1.1 DNA-binding protein compare
BPHYT_RS16345 -2.0 -3.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS02650 -1.9 -1.2 membrane protein compare
BPHYT_RS14895 -1.9 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS09330 -1.8 -8.4 phytoene synthase compare
BPHYT_RS15645 -1.8 -7.9 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS15710 -1.8 -1.4 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS24315 -1.8 -1.4 phosphoribosyltransferase compare
BPHYT_RS35885 -1.7 -2.3 hypothetical protein compare
BPHYT_RS03570 -1.7 -6.0 heat-inducible transcription repressor HrcA compare
BPHYT_RS06075 -1.7 -8.7 hypothetical protein compare
BPHYT_RS04370 -1.7 -1.6 glycosyl transferase compare
BPHYT_RS17700 -1.7 -2.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS29620 -1.7 -0.9 hypothetical protein compare
BPHYT_RS16340 -1.7 -3.6 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06070 -1.7 -6.7 cytochrome C compare
BPHYT_RS14060 -1.7 -1.8 peptidase M23 compare
BPHYT_RS10100 -1.7 -3.9 dihydroxy-acid dehydratase compare
BPHYT_RS13450 -1.7 -1.8 GntR family transcriptional regulator compare
BPHYT_RS14835 -1.6 -5.3 deacetylase compare
BPHYT_RS31345 -1.6 -2.3 malonate transporter compare
BPHYT_RS02365 -1.6 -1.6 hypothetical protein compare
BPHYT_RS28705 -1.6 -2.0 IclR family transcriptional regulator compare
BPHYT_RS03625 -1.6 -7.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS25780 -1.6 -1.2 DeoR faimly transcriptional regulator compare
BPHYT_RS01115 -1.6 -2.6 hypothetical protein compare
BPHYT_RS25500 -1.6 -1.7 hypothetical protein compare
BPHYT_RS18705 -1.6 -1.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS21025 -1.6 -1.5 cation-binding protein compare
BPHYT_RS29540 -1.5 -1.7 aldolase compare
BPHYT_RS03375 -1.5 -1.8 NAD(P) transhydrogenase compare
BPHYT_RS29085 -1.5 -1.4 LysR family transcriptional regulator compare
BPHYT_RS02640 -1.5 -9.2 cytochrome C oxidase compare
BPHYT_RS04920 -1.5 -1.6 aspartate 1-decarboxylase compare
BPHYT_RS33045 -1.5 -1.9 response regulator receiver protein compare
BPHYT_RS17265 -1.5 -1.1 cell division protein compare
BPHYT_RS05620 -1.5 -1.4 CsbD family protein compare
BPHYT_RS08125 -1.5 -7.0 ATPase compare
BPHYT_RS02765 -1.5 -1.7 cytochrome BD oxidase subunit I compare
BPHYT_RS31350 -1.5 -4.7 LysR family transcriptional regulator compare
BPHYT_RS08545 -1.5 -1.8 oxidoreductase compare
BPHYT_RS28370 -1.4 -1.4 peroxidase compare
BPHYT_RS36150 -1.4 -3.3 hypothetical protein compare
BPHYT_RS30425 -1.4 -1.7 LysR family transcriptional regulator compare
BPHYT_RS15640 -1.4 -8.0 L-aspartate oxidase compare
BPHYT_RS06065 -1.4 -7.9 cytochrome C compare
BPHYT_RS26955 -1.4 -1.3 succinylglutamate desuccinylase compare
BPHYT_RS06985 -1.4 -3.4 fumarate hydratase compare
BPHYT_RS19565 -1.3 -6.5 gamma-glutamyl:cysteine ligase compare
BPHYT_RS04890 -1.3 -0.9 cobalamin biosynthesis protein CobD compare
BPHYT_RS14195 -1.3 -2.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS09315 -1.3 -0.9 chemotaxis protein CheY compare
BPHYT_RS17905 -1.3 -1.7 fimbrial assembly family protein compare
BPHYT_RS27430 -1.3 -1.8 LysR family transcriptional regulator compare
BPHYT_RS05320 -1.2 -1.4 beta-lactamase compare
BPHYT_RS04340 -1.2 -2.8 hypothetical protein compare
BPHYT_RS22135 -1.2 -1.7 3-ketoacyl-ACP reductase compare
BPHYT_RS16430 -1.2 -8.6 cytochrome C compare
BPHYT_RS26525 -1.2 -1.2 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS12990 -1.2 -1.9 iron transporter compare
BPHYT_RS03400 -1.2 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS10475 -1.2 -1.6 mammalian cell entry protein compare
BPHYT_RS32400 -1.2 -2.5 TetR family transcriptional regulator compare
BPHYT_RS28480 -1.2 -1.5 hydroxyglutarate oxidase compare
BPHYT_RS34815 -1.2 -1.3 ABC transporter compare
BPHYT_RS06025 -1.2 -4.1 hypothetical protein compare
BPHYT_RS19920 -1.2 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS19985 -1.2 -1.0 CoA-transferase compare
BPHYT_RS19570 -1.2 -6.5 sodium/hydrogen exchanger compare
BPHYT_RS15075 -1.2 -0.9 dihydrokaempferol 4-reductase compare
BPHYT_RS16320 -1.2 -3.9 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS28620 -1.2 -2.2 enoyl-CoA hydratase compare
BPHYT_RS30825 -1.2 -2.1 extradiol dioxygenase compare
BPHYT_RS01975 -1.2 -1.8 hypothetical protein compare
BPHYT_RS31815 -1.2 -2.4 hypothetical protein compare
BPHYT_RS36130 -1.2 -1.4 hypothetical protein compare
BPHYT_RS20070 -1.1 -1.5 hypothetical protein compare
BPHYT_RS05355 -1.1 -1.3 Crp/Fnr family transcriptional regulator compare
BPHYT_RS16180 -1.1 -1.0 TetR family transcriptional regulator compare
BPHYT_RS15410 -1.1 -3.3 hypothetical protein compare
BPHYT_RS11155 -1.1 -1.3 hypothetical protein compare
BPHYT_RS10435 -1.1 -2.2 ThiJ/PfpI domain-containing protein compare
BPHYT_RS11125 -1.1 -1.1 alkylhydroperoxidase compare
BPHYT_RS15290 -1.1 -2.2 tRNA-Arg compare
BPHYT_RS31190 -1.1 -2.6 ABC transporter permease compare
BPHYT_RS14380 -1.1 -3.9 elongation factor 4 compare
BPHYT_RS14900 -1.1 -1.6 prephenate dehydrogenase compare
BPHYT_RS15670 -1.1 -4.6 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS28470 -1.1 -1.1 hypothetical protein compare
BPHYT_RS11810 -1.1 -0.9 LysR family transcriptional regulator compare
BPHYT_RS06990 -1.1 -0.7 membrane protein compare
BPHYT_RS08335 -1.1 -1.3 hypothetical protein compare
BPHYT_RS10350 -1.1 -3.2 hypothetical protein compare
BPHYT_RS17095 -1.1 -2.1 proline--tRNA ligase compare
BPHYT_RS21765 -1.1 -1.3 IclR family transcriptional regulator compare
BPHYT_RS18640 -1.1 -3.2 membrane protein compare
BPHYT_RS02665 -1.0 -5.2 MFS transporter compare
BPHYT_RS34430 -1.0 -0.9 2-keto-4-pentenoate hydratase compare
BPHYT_RS16435 -1.0 -6.8 alcohol dehydrogenase compare
BPHYT_RS16370 -1.0 -4.1 histidine kinase compare
BPHYT_RS13320 -1.0 -0.9 allantoate amidohydrolase compare
BPHYT_RS02635 -1.0 -5.1 membrane protein compare
BPHYT_RS27760 -1.0 -1.9 ABC transporter compare
BPHYT_RS18280 -1.0 -3.6 TetR family transcriptional regulator compare
BPHYT_RS11685 -1.0 -1.1 phasin family protein compare
BPHYT_RS10945 -1.0 -1.4 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS27395 -1.0 -1.3 N-acetyltransferase GCN5 compare
BPHYT_RS23990 -1.0 -1.1 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS08415 -1.0 -1.8 hypothetical protein compare
BPHYT_RS26890 -1.0 -2.1 LysR family transcriptional regulator compare
BPHYT_RS18710 -1.0 -1.5 membrane protein compare
BPHYT_RS07635 -1.0 -2.0 alkanesulfonate monooxygenase compare
BPHYT_RS36040 -1.0 -2.9 hypothetical protein compare
BPHYT_RS16665 -1.0 -1.4 peroxiredoxin compare
BPHYT_RS27230 -1.0 -1.6 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Malonic acid in Burkholderia phytofirmans PsJN

For carbon source Malonic acid across organisms