Experiment set10IT093 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.25x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS00140 +1.7 3.2 phosphate transport system regulator PhoU compare
BWI76_RS17980 +1.6 6.3 RNA chaperone ProQ compare
BWI76_RS06930 +1.5 10.2 iron export ABC transporter permease subunit FetB compare
BWI76_RS06925 +1.5 10.3 iron ABC transporter ATP-binding protein FetA compare
BWI76_RS17975 +1.4 5.4 tail-specific protease compare
BWI76_RS16965 +1.4 2.9 murein lipoprotein compare
BWI76_RS06340 +1.3 1.9 hypothetical protein compare
BWI76_RS13240 +1.3 2.3 hypothetical protein compare
BWI76_RS26455 +1.3 5.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS23895 +1.3 2.3 Xaa-Pro aminopeptidase compare
BWI76_RS04525 +1.3 2.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS08405 +1.3 3.6 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS21235 +1.2 1.9 hypothetical protein compare
BWI76_RS16805 +1.1 2.5 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS26470 +1.1 4.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS14065 +1.1 2.3 hypothetical protein compare
BWI76_RS05465 +1.1 1.5 amidohydrolase compare
BWI76_RS25365 +1.0 7.6 serine endoprotease DegQ compare
BWI76_RS08535 +1.0 3.3 translocation protein TolB compare
BWI76_RS15260 +1.0 2.3 hypothetical protein compare
BWI76_RS12460 +1.0 2.7 envelope stress response membrane protein PspC compare
BWI76_RS07640 +1.0 2.2 short chain dehydrogenase compare
BWI76_RS11285 +1.0 1.9 transcriptional regulator compare
BWI76_RS16675 +1.0 2.1 ABC transporter compare
BWI76_RS17155 +1.0 1.9 hypothetical protein compare
BWI76_RS15205 +0.9 2.4 succinate-semialdehyde dehydrogenase compare
BWI76_RS11820 +0.9 1.6 short-chain dehydrogenase/reductase SDR compare
BWI76_RS03595 +0.9 1.8 ethanolamine utilization protein EutM compare
BWI76_RS26460 +0.9 3.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS14835 +0.9 1.3 hypothetical protein compare
BWI76_RS05440 +0.9 5.9 hydroxyacylglutathione hydrolase compare
BWI76_RS10755 +0.9 1.6 pyrimidine utilization flavin reductase protein F compare
BWI76_RS15975 +0.9 1.3 hypothetical protein compare
BWI76_RS17675 +0.8 1.2 hypothetical protein compare
BWI76_RS19100 +0.8 2.4 putative acid phosphatase compare
BWI76_RS25285 +0.8 1.1 HPr family phosphocarrier protein compare
BWI76_RS18870 +0.8 1.4 protein NifZ compare
BWI76_RS23530 +0.8 2.5 MarR family transcriptional regulator compare
BWI76_RS18240 +0.8 2.4 L-arabinose ABC transporter permease AraH compare
BWI76_RS24180 +0.8 1.9 hypothetical protein compare
BWI76_RS06745 +0.8 2.4 N-acetyltransferase GCN5 compare
BWI76_RS26620 +0.7 1.3 Fe-S biogenesis protein NfuA compare
BWI76_RS16815 +0.7 1.5 periplasmic binding protein compare
BWI76_RS14505 +0.7 2.4 salicylate synthase Irp9 compare
BWI76_RS16140 +0.7 1.5 3-oxoadipate CoA-transferase compare
BWI76_RS23500 +0.7 6.4 hypothetical protein compare
BWI76_RS23495 +0.7 5.0 hypothetical protein compare
BWI76_RS15940 +0.7 2.2 DMSO reductase maturation protein DsmD compare
BWI76_RS16955 +0.7 1.3 hypothetical protein compare
BWI76_RS26440 +0.7 1.7 hypothetical protein compare
BWI76_RS11250 +0.7 0.9 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS20360 +0.7 1.3 cell division protein DedD compare
BWI76_RS17330 +0.7 1.7 nitrate reductase subunit beta compare
BWI76_RS06910 +0.7 1.3 transcriptional regulator compare
BWI76_RS04270 +0.7 2.9 transaldolase compare
BWI76_RS20785 +0.7 1.1 ethanolamine utilization protein EutJ compare
BWI76_RS21075 +0.7 0.9 membrane protein compare
BWI76_RS05880 +0.7 0.6 AraC-type DNA-binding domain-containing protein compare
BWI76_RS02800 +0.7 2.3 ABC transporter compare
BWI76_RS10890 +0.7 2.4 glyoxylate/hydroxypyruvate reductase A compare
BWI76_RS07710 +0.7 2.4 invasin-like protein compare
BWI76_RS11060 +0.7 1.5 septum formation inhibitor Maf compare
BWI76_RS11710 +0.7 1.7 nucleotide excision repair endonuclease compare
BWI76_RS00880 +0.7 2.4 membrane protein compare
BWI76_RS08370 +0.7 2.6 membrane protein compare
BWI76_RS13805 +0.7 2.4 inorganic diphosphatase compare
BWI76_RS12855 +0.7 1.4 enamine deaminase RidA compare
BWI76_RS08520 +0.6 1.6 colicin transporter TolQ compare
BWI76_RS03815 +0.6 2.3 hypothetical protein compare
BWI76_RS19750 +0.6 2.1 elongation factor P-like protein YeiP compare
BWI76_RS10255 +0.6 2.6 dihydrodipicolinate synthase family protein compare
BWI76_RS06975 +0.6 2.6 DNA-binding transcriptional activator AllS compare
BWI76_RS24390 +0.6 1.5 hypothetical protein compare
BWI76_RS05555 +0.6 2.5 Crl family RNA polymerase assembly factor compare
BWI76_RS27235 +0.6 3.8 murein hydrolase activator EnvC compare
BWI76_RS14200 +0.6 2.0 protocatechuate 4,5-dioxygenase compare
BWI76_RS26665 +0.6 2.3 DNA-binding response regulator compare
BWI76_RS20085 +0.6 2.2 GNAT family N-acetyltransferase compare
BWI76_RS24810 +0.6 0.9 hypothetical protein compare
BWI76_RS21290 +0.6 2.1 DNA-binding transcriptional regulator compare
BWI76_RS17325 +0.6 1.9 nitrate reductase molybdenum cofactor assembly chaperone compare
BWI76_RS01585 +0.6 3.0 transcriptional regulator compare
BWI76_RS16840 +0.6 2.2 ABC transporter compare
BWI76_RS19495 +0.6 0.9 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS19770 +0.6 1.6 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS07185 +0.6 1.5 hypothetical protein compare
BWI76_RS24945 +0.6 1.1 glutamine amidotransferase compare
BWI76_RS06735 +0.6 1.4 50S ribosomal protein L31 compare
BWI76_RS05885 +0.6 2.2 anion permease compare
BWI76_RS16510 +0.6 2.3 transcriptional repressor PurR compare
BWI76_RS02820 +0.6 4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BWI76_RS27395 +0.6 3.1 hypothetical protein compare
BWI76_RS26390 +0.6 3.2 cell division protein FtsX compare
BWI76_RS13315 +0.6 1.5 50S ribosomal protein L7/L12-serine acetyltransferase compare
BWI76_RS23325 +0.6 1.4 hypothetical protein compare
BWI76_RS21675 +0.6 1.2 hypothetical protein compare
BWI76_RS08315 +0.6 1.6 K+-transporting ATPase subunit B compare
BWI76_RS09320 +0.6 2.4 P2 phage tail completion protein R compare
BWI76_RS16195 +0.6 0.7 hypothetical protein compare
BWI76_RS08335 +0.6 1.4 deoxyribodipyrimidine photo-lyase compare
BWI76_RS15760 +0.6 1.0 hypothetical protein compare
BWI76_RS04850 +0.6 2.2 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS08545 +0.6 1.8 cell division protein CpoB compare
BWI76_RS11835 +0.6 1.5 putative regulatory protein MarR compare
BWI76_RS23120 +0.6 1.8 propanediol dehydratase medium subunit compare
BWI76_RS19490 +0.6 1.6 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS06540 +0.6 2.1 DNA-binding protein HU-beta compare
BWI76_RS13425 +0.6 2.4 1-pyrroline dehydrogenase compare
BWI76_RS26245 +0.6 2.2 transcriptional regulator compare
BWI76_RS01565 +0.6 1.2 NADH pyrophosphatase compare
BWI76_RS11440 +0.6 0.9 hypothetical protein compare
BWI76_RS22815 +0.5 3.7 hybrid sensor histidine kinase/response regulator compare
BWI76_RS26830 +0.5 2.8 endoglucanase compare
BWI76_RS26395 +0.5 1.2 cell division protein FtsE compare
BWI76_RS05570 +0.5 0.9 hypothetical protein compare
BWI76_RS23195 +0.5 2.2 ethanolamine utilization protein EutP compare
BWI76_RS02690 +0.5 1.6 hypothetical protein compare
BWI76_RS13140 +0.5 1.6 phenylacetate-CoA ligase compare
BWI76_RS27830 +0.5 1.9 type I toxin-antitoxin system toxin TisB compare
BWI76_RS25245 +0.5 1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS05235 +0.5 0.9 hypothetical protein compare
BWI76_RS10375 +0.5 1.5 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS14040 +0.5 1.2 thiaminase compare
BWI76_RS20155 +0.5 0.9 NADH-quinone oxidoreductase subunit I compare
BWI76_RS27620 +0.5 2.2 hypothetical protein compare
BWI76_RS15795 +0.5 2.1 bacteriophage CII family protein compare
BWI76_RS07725 +0.5 0.6 iron-enterobactin transporter permease compare
BWI76_RS17945 +0.5 1.3 hypothetical protein compare
BWI76_RS09590 +0.5 3.5 ATP-dependent OLD family endonuclease compare
BWI76_RS23490 +0.5 4.0 fimbrial protein compare
BWI76_RS23690 +0.5 1.4 putative glyoxalase/bleomycin resistance protein/dioxygenase compare
BWI76_RS12600 +0.5 2.0 MFS transporter compare
BWI76_RS06290 +0.5 1.3 ACP phosphodiesterase compare
BWI76_RS24965 +0.5 1.5 SCP2 domain-containing protein compare
BWI76_RS08825 +0.5 2.2 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS21350 +0.5 2.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS13730 +0.5 1.3 hypothetical protein compare
BWI76_RS06475 +0.5 0.8 protoheme IX farnesyltransferase compare
BWI76_RS20695 +0.5 1.1 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS25225 +0.5 1.6 ABC transporter permease compare
BWI76_RS26875 +0.5 1.3 dipeptide ABC transporter permease DppC compare
BWI76_RS09455 +0.5 1.8 YbjN domain-containing protein compare
BWI76_RS01190 +0.5 1.6 iron donor protein CyaY compare
BWI76_RS16645 +0.5 1.3 DeoR family transcriptional regulator compare
BWI76_RS05520 +0.5 1.7 hypothetical protein compare
BWI76_RS18755 +0.5 0.8 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS18305 +0.5 2.0 dihydrodipicolinate synthase family protein compare
BWI76_RS11780 +0.5 0.9 2-deoxyglucose-6-phosphatase compare
BWI76_RS24655 +0.5 2.2 autoinducer 2 ABC transporter permease LsrC compare
BWI76_RS14980 +0.5 0.8 hypothetical protein compare
BWI76_RS18565 +0.5 1.3 pemk protein compare
BWI76_RS06800 +0.5 0.8 DUF2496 domain-containing protein compare
BWI76_RS09470 +0.5 1.9 putrescine ABC transporter permease compare
BWI76_RS15135 +0.5 2.2 hypothetical protein compare
BWI76_RS16470 +0.5 0.9 transcriptional repressor NemR compare
BWI76_RS01000 +0.5 2.0 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS27635 +0.5 1.9 AraC family transcriptional regulator compare
BWI76_RS10740 +0.5 1.5 NAD(P)H:quinone oxidoreductase compare
BWI76_RS13610 +0.5 2.1 sugar transporter compare
BWI76_RS12100 +0.5 2.7 replication protein P compare
BWI76_RS06665 +0.5 1.8 membrane protein compare
BWI76_RS23735 +0.5 1.1 sugar diacid utilization regulator compare
BWI76_RS00715 +0.5 1.8 two-component sensor histidine kinase compare
BWI76_RS05205 +0.5 2.7 type I methionyl aminopeptidase compare
BWI76_RS01285 +0.5 2.5 amino acid ABC transporter substrate-binding protein compare
BWI76_RS19835 +0.5 2.2 nucleoid-associated protein YejK compare
BWI76_RS11460 +0.5 1.3 DUF441 family protein compare
BWI76_RS09630 +0.5 1.7 leucyl/phenylalanyl-tRNA--protein transferase compare
BWI76_RS12150 +0.5 1.5 DNA damage-inducible protein I compare
BWI76_RS24745 +0.5 1.5 membrane protein compare
BWI76_RS13015 +0.5 2.1 LysR family transcriptional regulator compare
BWI76_RS15190 +0.5 1.7 GGDEF domain-containing protein compare
BWI76_RS14900 +0.5 1.8 oxidoreductase compare
BWI76_RS23675 +0.5 2.6 allulose-6-phosphate 3-epimerase compare
BWI76_RS11020 +0.5 1.6 oxidoreductase family, NAD-binding protein compare
BWI76_RS14925 +0.5 0.9 ABC transporter substrate-binding protein compare
BWI76_RS25000 +0.5 1.0 malonate decarboxylase acyl carrier protein compare
BWI76_RS13200 +0.5 2.2 hypothetical protein compare
BWI76_RS23055 +0.5 1.8 cobalamin biosynthesis protein CbiG compare
BWI76_RS16030 +0.5 0.9 malonate decarboxylase acyl carrier protein compare
BWI76_RS24480 +0.5 2.9 undecaprenyl-diphosphatase compare
BWI76_RS21485 +0.5 3.1 DUF4154 domain-containing protein compare
BWI76_RS18555 +0.4 3.0 MATE family multidrug exporter compare
BWI76_RS20720 +0.4 0.6 hypothetical protein compare
BWI76_RS11605 +0.4 2.1 DNA topoisomerase III compare
BWI76_RS17315 +0.4 1.9 EamA family transporter compare
BWI76_RS13710 +0.4 1.4 benzoate 1,2-dioxygenase small subunit compare
BWI76_RS15970 +0.4 0.9 carboxypeptidase M32 compare
BWI76_RS10060 +0.4 0.8 acylphosphatase compare
BWI76_RS08970 +0.4 1.3 glutamine ABC transporter permease GlnP compare
BWI76_RS10465 +0.4 1.7 hypothetical protein compare
BWI76_RS12870 +0.4 1.2 putative phytanoyl-CoA dioxygenase compare
BWI76_RS09720 +0.4 1.4 PTS ascorbate transporter subunit IIB compare
BWI76_RS17370 +0.4 1.1 nitrate transporter NasD compare
BWI76_RS11300 +0.4 0.8 cupin compare
BWI76_RS06130 +0.4 1.1 extensin family protein compare
BWI76_RS13895 +0.4 1.6 LysR family transcriptional regulator compare
BWI76_RS25945 +0.4 1.7 ABC transporter ATP-binding protein compare
BWI76_RS01595 +0.4 1.2 zinc resistance protein compare
BWI76_RS19145 +0.4 1.0 formate dehydrogenase cytochrome b556 subunit compare


Specific Phenotypes

For 2 genes in this experiment

For exudates Brachypodium distachyon 27-day exudates in Klebsiella michiganensis M5al

For exudates Brachypodium distachyon 27-day exudates across organisms