Experiment set10IT093 for Herbaspirillum seropedicae SmR1

Compare to:

C.elegans, mixed culture-1

200 most important genes:

  gene name fitness t score description  
HSERO_RS09720 -5.9 -4.1 membrane protein compare
HSERO_RS08515 -5.4 -3.7 diguanylate cyclase compare
HSERO_RS16480 -4.8 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS19805 -4.7 -3.3 glycosyl transferase compare
HSERO_RS08655 -4.6 -3.2 acetolactate synthase compare
HSERO_RS09725 -4.3 -5.9 ABC transporter compare
HSERO_RS09730 -4.3 -5.1 glycoside hydrolase family 43 compare
HSERO_RS09735 -4.0 -2.8 hypothetical protein compare
HSERO_RS04860 -4.0 -1.7 sugar ABC transporter permease compare
HSERO_RS13315 -3.7 -1.5 ferredoxin compare
HSERO_RS08115 -3.5 -1.4 acyl-CoA-binding protein compare
HSERO_RS16040 -3.4 -3.2 cytochrome CBB3 compare
HSERO_RS09775 -3.3 -1.9 cobalamin synthase compare
HSERO_RS15665 -3.2 -1.3 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS20260 -3.2 -2.4 2-alkenal reductase compare
HSERO_RS12690 -3.1 -1.4 transcriptional regulator compare
HSERO_RS16475 -3.0 -1.8 tryptophan synthase subunit alpha compare
HSERO_RS17105 -2.9 -1.6 DNA polymerase III subunit epsilon compare
HSERO_RS21445 -2.8 -1.6 lipid A biosynthesis acyltransferase compare
HSERO_RS16470 -2.8 -2.2 tryptophan synthase subunit alpha compare
HSERO_RS15070 -2.8 -1.1 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS00430 -2.7 -2.6 glutamate--cysteine ligase compare
HSERO_RS19445 -2.7 -7.7 anthranilate phosphoribosyltransferase compare
HSERO_RS17110 -2.7 -2.1 ribonuclease H compare
HSERO_RS15630 -2.7 -1.1 exodeoxyribonuclease III compare
HSERO_RS19785 -2.6 -3.5 sensor histidine kinase compare
HSERO_RS09910 -2.6 -1.9 integration host factor subunit alpha compare
HSERO_RS04325 -2.6 -1.8 helicase I compare
HSERO_RS04135 -2.5 -2.4 amidohydrolase compare
HSERO_RS19450 -2.5 -3.9 indole-3-glycerol-phosphate synthase compare
HSERO_RS16070 -2.5 -1.7 cytochrome biogenesis protein compare
HSERO_RS09745 -2.5 -1.3 chemotaxis protein CheY compare
HSERO_RS08420 -2.5 -2.0 hypothetical protein compare
HSERO_RS09740 -2.5 -3.1 histidine kinase compare
HSERO_RS08430 -2.5 -3.2 diguanylate cyclase compare
HSERO_RS00795 -2.4 -2.9 glycerol-3-phosphate dehydrogenase compare
HSERO_RS02245 -2.4 -2.5 hypothetical protein compare
HSERO_RS05620 -2.3 -1.4 dehydratase compare
HSERO_RS03520 -2.3 -1.6 aminoglycoside phosphotransferase compare
HSERO_RS00815 -2.3 -2.0 sulfurtransferase compare
HSERO_RS22600 -2.2 -1.5 transcriptional regulator compare
HSERO_RS00805 -2.2 -1.8 preprotein translocase subunit SecB compare
HSERO_RS20625 -2.2 -1.3 phenylacetate-CoA oxygenase compare
HSERO_RS05505 -2.2 -3.9 transcriptional regulator compare
HSERO_RS13560 -2.1 -2.3 transcriptional regulator compare
HSERO_RS09915 -2.0 -1.6 transcriptional regulator compare
HSERO_RS18010 -2.0 -1.0 pseudouridine synthase compare
HSERO_RS03915 -2.0 -1.4 hypothetical protein compare
HSERO_RS09455 -2.0 -2.3 NAD synthetase compare
HSERO_RS02260 -1.9 -2.6 DNA polymerase I compare
HSERO_RS23945 -1.9 -1.8 cobyric acid synthase CobQ compare
HSERO_RS07435 -1.9 -2.3 formate dehydrogenase accessory protein FdhD compare
HSERO_RS01935 -1.9 -4.3 3-dehydroquinate dehydratase compare
HSERO_RS11665 -1.9 -2.2 nitrate ABC transporter ATP-binding protein compare
HSERO_RS07160 -1.8 -3.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS04150 -1.8 -1.5 hypothetical protein compare
HSERO_RS19590 -1.8 -1.0 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS17980 -1.8 -1.4 GTP-binding protein compare
HSERO_RS11855 -1.8 -1.3 hypothetical protein compare
HSERO_RS02160 -1.7 -2.3 DNA-dependent helicase compare
HSERO_RS02780 -1.7 -1.7 hypothetical protein compare
HSERO_RS08000 -1.7 -2.3 metal-transporting P-type ATPase transmembrane protein compare
HSERO_RS01315 -1.7 -1.9 transcriptional regulator compare
HSERO_RS13410 -1.7 -2.8 hypothetical protein compare
HSERO_RS20920 -1.7 -4.7 3-dehydroquinate synthase compare
HSERO_RS17900 -1.6 -1.5 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS22285 -1.6 -1.7 GntR family transcriptional regulator compare
HSERO_RS15340 -1.6 -5.2 cytochrome BD oxidase subunit I compare
HSERO_RS03780 -1.6 -3.5 type VI secretion protein compare
HSERO_RS14025 -1.6 -2.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS16035 -1.6 -1.1 cytochrome C oxidase compare
HSERO_RS08990 -1.6 -2.4 heat shock protein 90 compare
HSERO_RS21370 -1.5 -1.7 dihydrolipoamide acyltransferase compare
HSERO_RS09760 -1.5 -3.8 hypothetical protein compare
HSERO_RS02155 -1.5 -1.7 chorismate mutase compare
HSERO_RS03270 -1.5 -2.8 protein RecA compare
HSERO_RS15205 -1.5 -1.7 LysR family transcriptional regulator compare
HSERO_RS15345 -1.5 -2.6 cytochrome BD oxidase subunit II compare
HSERO_RS02110 -1.5 -1.8 hypothetical protein compare
HSERO_RS03265 -1.4 -3.7 transcription regulator protein compare
HSERO_RS09290 -1.4 -3.1 ribonuclease R compare
HSERO_RS06860 -1.4 -3.2 AraC family transcriptional regulator compare
HSERO_RS08605 -1.4 -1.6 Hsp33 chaperonin compare
HSERO_RS21640 -1.4 -1.6 recombinase RdgC compare
HSERO_RS11980 -1.4 -2.0 hypothetical protein compare
HSERO_RS16420 -1.4 -3.4 phosphoesterase compare
HSERO_RS16075 -1.3 -0.9 coproporphyrinogen III oxidase compare
HSERO_RS21475 -1.3 -1.2 recombinase XerC compare
HSERO_RS06650 -1.3 -1.9 MarR family transcriptional regulator compare
HSERO_RS12190 -1.3 -2.6 MFS transporter compare
HSERO_RS12295 -1.3 -1.5 histidine kinase compare
HSERO_RS04330 -1.3 -2.8 ATP-dependent exonuclease compare
HSERO_RS11200 -1.2 -2.6 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS21150 -1.2 -1.3 aldolase compare
HSERO_RS02545 -1.2 -1.1 membrane protein compare
HSERO_RS19835 -1.2 -2.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS19525 -1.2 -1.9 PTS sugar transporter subunit IIA compare
HSERO_RS05340 -1.2 -2.2 short-chain dehydrogenase compare
HSERO_RS03450 -1.2 -0.9 energy transducer protein TonB compare
HSERO_RS08640 -1.2 -0.9 hypothetical protein compare
HSERO_RS19435 -1.2 -4.3 anthranilate synthase subunit I compare
HSERO_RS02450 -1.2 -1.1 arsenate reductase compare
HSERO_RS07600 -1.2 -2.6 threonine-phosphate decarboxylase compare
HSERO_RS07345 -1.1 -1.2 hypothetical protein compare
HSERO_RS09855 -1.1 -1.3 GTP pyrophosphokinase compare
HSERO_RS01870 -1.1 -2.6 ABC transporter permease compare
HSERO_RS15040 -1.1 -3.0 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS01050 -1.1 -1.6 baseplate protein compare
HSERO_RS02365 -1.1 -2.5 hypothetical protein compare
HSERO_RS00800 -1.1 -2.5 hypothetical protein compare
HSERO_RS07175 -1.1 -1.9 hypothetical protein compare
HSERO_RS18230 -1.1 -1.5 pilus assembly protein compare
HSERO_RS19970 -1.1 -1.9 branched-chain amino acid ABC transporter compare
HSERO_RS20235 -1.1 -0.9 cytochrome C compare
HSERO_RS07260 -1.1 -1.8 diguanylate cyclase compare
HSERO_RS03125 -1.1 -2.8 SAM-dependent methyltransferase compare
HSERO_RS23655 -1.1 -1.1 phosphonate ABC transporter permease compare
HSERO_RS12920 -1.1 -0.8 trigger factor compare
HSERO_RS07110 -1.1 -3.1 16S rRNA methyltransferase compare
HSERO_RS12795 -1.1 -1.8 hypothetical protein compare
HSERO_RS12215 -1.0 -0.9 alpha/beta hydrolase superfamily protein compare
HSERO_RS10460 -1.0 -0.9 homoserine dehydrogenase compare
HSERO_RS17155 -1.0 -1.7 RNA helicase compare
HSERO_RS05910 -1.0 -1.3 phosphoribosylglycinamide formyltransferase compare
HSERO_RS15550 -1.0 -2.0 sulfite reductase compare
HSERO_RS20855 -1.0 -2.4 ferritin compare
HSERO_RS10850 -1.0 -1.5 ABC transporter compare
HSERO_RS20910 -1.0 -1.2 hypothetical protein compare
HSERO_RS01240 -1.0 -1.9 RNA-binding protein S4 compare
HSERO_RS21990 -1.0 -1.0 hypothetical protein compare
HSERO_RS01780 -1.0 -0.8 translation initiation factor IF-1 compare
HSERO_RS00835 -1.0 -1.5 molybdopterin biosynthesis protein MoeB compare
HSERO_RS07025 -1.0 -1.9 ATP-dependent Clp protease ClpS compare
HSERO_RS11405 -1.0 -1.6 transcriptional regulator compare
HSERO_RS18045 -1.0 -0.7 hypothetical protein compare
HSERO_RS10840 -1.0 -3.3 cyanophycin synthetase compare
HSERO_RS04825 -1.0 -1.0 XRE family transcriptional regulator compare
HSERO_RS13655 -1.0 -2.1 hypothetical protein compare
HSERO_RS15335 -1.0 -1.2 hypothetical protein compare
HSERO_RS16055 -1.0 -2.2 cytochrome oxidase subunit I compare
HSERO_RS15350 -1.0 -1.8 membrane protein compare
HSERO_RS13420 -1.0 -2.0 2-hydroxyacid dehydrogenase compare
HSERO_RS23765 -0.9 -1.8 hypothetical protein compare
HSERO_RS11755 -0.9 -2.5 acetyltransferase compare
HSERO_RS10010 -0.9 -1.5 UDP-glucose 6-dehydrogenase compare
HSERO_RS16015 -0.9 -2.1 fatty acid desaturase compare
HSERO_RS22845 -0.9 -2.9 LysR family transcriptional regulator compare
HSERO_RS07700 -0.9 -2.1 ABC transporter permease compare
HSERO_RS02650 -0.9 -3.8 dihydroxy-acid dehydratase compare
HSERO_RS11880 -0.9 -1.5 hypothetical protein compare
HSERO_RS06730 -0.9 -2.4 hypothetical protein compare
HSERO_RS08775 -0.9 -1.8 membrane protein compare
HSERO_RS21200 -0.9 -4.5 glycosyl transferase family 1 compare
HSERO_RS02205 -0.9 -1.1 phosphatase compare
HSERO_RS05890 -0.9 -1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS21210 -0.9 -4.3 membrane protein compare
HSERO_RS19520 -0.9 -1.3 hypothetical protein compare
HSERO_RS03350 -0.9 -2.4 hypothetical protein compare
HSERO_RS19005 -0.9 -1.3 glutathione peroxidase compare
HSERO_RS15110 -0.9 -2.1 toxin compare
HSERO_RS01245 -0.9 -0.8 hypothetical protein compare
HSERO_RS03035 -0.9 -1.0 small protein A compare
HSERO_RS02795 -0.9 -1.0 alcohol dehydrogenase compare
HSERO_RS15575 -0.9 -0.6 uroporphyrin-III C-methyltransferase compare
HSERO_RS13340 -0.9 -0.9 hypothetical protein compare
HSERO_RS18970 -0.9 -1.5 hypothetical protein compare
HSERO_RS21500 -0.9 -1.6 hypothetical protein compare
HSERO_RS09155 -0.9 -3.2 DNA topoisomerase IV subunit B compare
HSERO_RS11825 -0.9 -2.3 hypothetical protein compare
HSERO_RS19585 -0.9 -2.8 peptidase M61 compare
HSERO_RS07890 -0.9 -1.2 hypothetical protein compare
HSERO_RS01120 -0.9 -2.6 hypothetical protein compare
HSERO_RS21100 -0.9 -3.1 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS18775 -0.9 -1.4 phage killer protein compare
HSERO_RS03260 -0.8 -1.3 histidine kinase compare
HSERO_RS02215 -0.8 -0.3 D-arabinitol 4-dehydrogenase compare
HSERO_RS12990 -0.8 -1.3 aankyrin compare
HSERO_RS14395 -0.8 -1.1 oxygen-binding protein compare
HSERO_RS22085 -0.8 -1.8 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS08105 -0.8 -2.1 sodium:proton antiporter compare
HSERO_RS16140 -0.8 -2.2 ADP-ribose pyrophosphatase compare
HSERO_RS08485 -0.8 -1.3 hypothetical protein compare
HSERO_RS17710 -0.8 -2.0 response regulator compare
HSERO_RS02770 -0.8 -0.8 hypothetical protein compare
HSERO_RS19550 -0.8 -1.5 hypothetical protein compare
HSERO_RS08725 -0.8 -1.1 transcriptional regulator compare
HSERO_RS05125 -0.8 -2.1 DeoR family transcripitonal regulator compare
HSERO_RS19140 -0.8 -2.8 Rieske (2Fe-2S) protein compare
HSERO_RS04230 -0.8 -0.9 LuxR family transcriptional regulator compare
HSERO_RS12395 -0.8 -1.1 TetR family transcriptional regulator compare
HSERO_RS07140 -0.8 -2.2 glutamine-synthetase adenylyltransferase compare
HSERO_RS05835 -0.8 -2.6 arginine ABC transporter ATP-binding protein compare
HSERO_RS00765 -0.8 -1.4 cytochrome C compare
HSERO_RS18175 -0.8 -1.7 nitrate reductase compare
HSERO_RS09925 -0.8 -1.7 hypothetical protein compare
HSERO_RS01530 -0.8 -1.9 3',5'-cyclic-nucleotide phosphodiesterase compare
HSERO_RS21230 -0.8 -1.5 GntR family transcriptional regulator compare
HSERO_RS10845 -0.8 -2.1 cyanophycin synthetase compare
HSERO_RS09205 -0.8 -1.3 glutathione ABC transporter permease compare
HSERO_RS09670 -0.8 -1.6 DNA repair protein RecO compare


Specific Phenotypes

For 3 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Herbaspirillum seropedicae SmR1

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms