Experiment set10IT093 for Herbaspirillum seropedicae SmR1

Compare to:

C.elegans, mixed culture-1

Group: micoeukaryotes
Media: LB (0.1x) + Pelleted after growth overnight in LB+Kan50 + CaCl2, MgSO4 (10mM ), pH=7
Culturing: HerbieS_ML4a, 48-well_plate, Aerobic, at 30 (C), shaken=700 rpm
By: VM on 6/23/21
Media components: 1 g/L Tryptone, 0.5 g/L Yeast Extract, 0.5 g/L Sodium Chloride (final concentrations)

Specific Phenotypes

For 3 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Herbaspirillum seropedicae SmR1

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms

SEED Subsystems

Subsystem #Specific
Bacterial Chemotaxis 1
Flagellar motility 1
Proteasome bacterial 1
Proteolysis in bacteria, ATP-dependent 1
Terminal cytochrome d ubiquinol oxidases 1
Terminal cytochrome oxidases 1
Two-component regulatory systems in Campylobacter 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
NADH to cytochrome bd oxidase electron transfer I 2 2 1
succinate to cytochrome bd oxidase electron transfer 2 2 1
pyruvate to cytochrome bd oxidase electron transfer 2 2 1
NADH to cytochrome bd oxidase electron transfer II 2 1 1