Experiment set10IT092 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS23920 -6.1 -5.9 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS02995 -6.1 -8.3 aspartate carbamoyltransferase compare
BWI76_RS23360 -6.0 -4.1 diaminopimelate decarboxylase compare
BWI76_RS18935 -5.9 -9.0 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS20350 -5.8 -6.3 amidophosphoribosyltransferase compare
BWI76_RS26085 -5.8 -3.9 3-dehydroquinate synthase compare
BWI76_RS21475 -5.7 -7.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS05835 -5.7 -3.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS20895 -5.7 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS07070 -5.7 -3.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS25645 -5.5 -8.4 shikimate dehydrogenase compare
BWI76_RS21265 -5.4 -14.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS05840 -5.3 -6.3 glutamate 5-kinase compare
BWI76_RS20355 -5.3 -5.7 colicin V production protein compare
BWI76_RS09755 -5.2 -7.0 phosphoserine transaminase compare
BWI76_RS04160 -5.0 -8.3 phosphoserine phosphatase compare
BWI76_RS09910 -5.0 -19.4 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS01615 -4.9 -12.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS04470 -4.8 -10.3 carbamoyl phosphate synthase large subunit compare
BWI76_RS20965 -4.7 -4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS00990 -4.6 -10.7 ketol-acid reductoisomerase compare
BWI76_RS00835 -4.6 -16.3 phosphoenolpyruvate carboxylase compare
BWI76_RS04645 -4.5 -7.1 3-dehydroquinase compare
BWI76_RS18925 -4.5 -9.1 histidinol dehydrogenase compare
BWI76_RS11965 -4.4 -3.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04255 -4.4 -8.2 threonine synthase compare
BWI76_RS25115 -4.2 -10.4 argininosuccinate synthase compare
BWI76_RS04465 -4.2 -6.3 carbamoyl-phosphate synthase small subunit compare
BWI76_RS01610 -4.2 -5.1 phosphoribosylamine--glycine ligase compare
BWI76_RS18950 -4.1 -2.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS07065 -4.1 -8.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS27385 -4.1 -7.8 orotate phosphoribosyltransferase compare
BWI76_RS00845 -4.0 -12.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS09645 -4.0 -2.6 thioredoxin-disulfide reductase compare
BWI76_RS00975 -3.9 -10.6 dihydroxy-acid dehydratase compare
BWI76_RS18955 -3.9 -7.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS23240 -3.9 -5.2 exonuclease V subunit gamma compare
BWI76_RS03010 -3.8 -9.6 ornithine carbamoyltransferase compare
BWI76_RS27390 -3.8 -6.0 ribonuclease PH compare
BWI76_RS00785 -3.7 -7.0 cystathionine gamma-synthase compare
BWI76_RS04245 -3.7 -15.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00850 -3.7 -10.1 acetylglutamate kinase compare
BWI76_RS18930 -3.7 -5.8 histidinol-phosphate transaminase compare
BWI76_RS04250 -3.7 -7.8 homoserine kinase compare
BWI76_RS04240 -3.6 -2.3 thr operon leader peptide compare
BWI76_RS00855 -3.6 -10.7 argininosuccinate lyase compare
BWI76_RS23365 -3.6 -7.0 LysR family transcriptional regulator compare
BWI76_RS09760 -3.5 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS23230 -3.5 -4.8 exodeoxyribonuclease V subunit beta compare
BWI76_RS00980 -3.5 -13.2 PLP-dependent threonine dehydratase compare
BWI76_RS15660 -3.4 -2.2 hypothetical protein compare
BWI76_RS04675 -3.4 -5.3 3-isopropylmalate dehydrogenase compare
BWI76_RS00400 -3.4 -2.3 glutamine synthetase compare
BWI76_RS01200 -3.3 -3.4 diaminopimelate epimerase compare
BWI76_RS26000 -3.3 -9.9 aspartate aminotransferase family protein compare
BWI76_RS23220 -3.2 -6.8 amino-acid N-acetyltransferase compare
BWI76_RS18920 -3.2 -4.1 ATP phosphoribosyltransferase compare
BWI76_RS08385 -3.2 -3.7 citrate (Si)-synthase compare
BWI76_RS01655 -3.2 -7.1 homoserine O-succinyltransferase compare
BWI76_RS22765 -3.2 -13.8 sulfite reductase subunit alpha compare
BWI76_RS18940 -3.2 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS04670 -3.0 -11.2 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04665 -2.9 -17.2 3-isopropylmalate dehydratase small subunit compare
BWI76_RS02735 -2.9 -6.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS00965 -2.9 -1.8 acetolactate synthase 2 small subunit compare
BWI76_RS09660 -2.9 -3.0 DNA translocase FtsK compare
BWI76_RS00985 -2.8 -7.4 transcriptional regulator IlvY compare
BWI76_RS00805 -2.8 -4.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS02530 -2.8 -3.6 tRNA dimethylallyltransferase compare
BWI76_RS22755 -2.7 -9.2 phosphoadenosine phosphosulfate reductase compare
BWI76_RS21480 -2.7 -6.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS20435 -2.6 -2.3 chorismate synthase compare
BWI76_RS22760 -2.6 -10.3 sulfite reductase subunit beta compare
BWI76_RS09970 -2.5 -3.8 porin OmpA compare
BWI76_RS26570 -2.5 -3.9 anion permease compare
BWI76_RS10990 -2.4 -1.4 dihydroorotase compare
BWI76_RS04685 -2.4 -9.1 putative leucine operon leader peptide compare
BWI76_RS21580 -2.3 -2.6 SsrA-binding protein compare
BWI76_RS11850 -2.3 -8.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS01350 -2.3 -1.7 NAD(P)H-flavin reductase compare
BWI76_RS21465 -2.2 -4.9 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS01210 -2.2 -4.0 tyrosine recombinase XerC compare
BWI76_RS04680 -2.0 -9.7 2-isopropylmalate synthase compare
BWI76_RS05200 -2.0 -2.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS11840 -2.0 -4.2 tryptophan synthase subunit alpha compare
BWI76_RS20650 -2.0 -1.3 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS20440 -2.0 -1.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS11860 -2.0 -6.6 anthranilate synthase component I compare
BWI76_RS13445 -1.9 -3.1 alpha/beta hydrolase compare
BWI76_RS01885 -1.9 -2.2 CsbD family protein compare
BWI76_RS11855 -1.9 -5.0 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS01800 -1.9 -4.3 glucose-6-phosphate isomerase compare
BWI76_RS26055 -1.8 -5.1 siroheme synthase compare
BWI76_RS21370 -1.8 -2.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS11845 -1.8 -3.7 tryptophan synthase subunit beta compare
BWI76_RS14935 -1.8 -1.7 NIPSNAP family containing protein compare
BWI76_RS25335 -1.8 -3.3 stringent starvation protein A compare
BWI76_RS02410 -1.8 -2.7 EF-P beta-lysylation protein EpmB compare
BWI76_RS19870 -1.8 -2.4 malate:quinone oxidoreductase compare
BWI76_RS13560 -1.7 -1.5 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS21140 -1.7 -1.9 molecular chaperone HscA compare
BWI76_RS20640 -1.7 -5.2 cysteine synthase A compare
BWI76_RS17300 -1.7 -2.5 tRNA-Tyr compare
BWI76_RS04510 -1.5 -2.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS20940 -1.5 -2.4 uracil/xanthine transporter compare
BWI76_RS15115 -1.5 -4.6 MFS transporter compare
BWI76_RS11980 -1.5 -2.2 DeoR family transcriptional regulator compare
BWI76_RS15850 -1.4 -2.5 DUF1317 domain-containing protein compare
BWI76_RS05450 -1.4 -2.0 ribonuclease HI compare
BWI76_RS04100 -1.4 -3.0 peptide chain release factor 3 compare
BWI76_RS00355 -1.4 -4.0 DNA polymerase I compare
BWI76_RS11520 -1.4 -1.5 hypothetical protein compare
BWI76_RS09190 -1.4 -3.2 hypothetical protein compare
BWI76_RS23480 -1.4 -8.2 EAL domain-containing protein compare
BWI76_RS09655 -1.4 -2.7 leucine-responsive regulatory protein compare
BWI76_RS20490 -1.4 -3.6 hypothetical protein compare
BWI76_RS19690 -1.4 -2.5 LysR family transcriptional regulator compare
BWI76_RS15835 -1.3 -1.4 hypothetical protein compare
BWI76_RS22690 -1.3 -3.0 adenylyl-sulfate kinase compare
BWI76_RS18575 -1.3 -1.7 transcriptional regulator compare
BWI76_RS15825 -1.3 -2.5 hypothetical protein compare
BWI76_RS13890 -1.3 -2.1 LysR family transcriptional regulator compare
BWI76_RS05015 -1.2 -2.9 transcriptional regulator compare
BWI76_RS01220 -1.2 -5.3 DNA-dependent helicase II compare
BWI76_RS25425 -1.2 -1.3 arginine repressor compare
BWI76_RS22695 -1.2 -2.9 sulfate adenylyltransferase compare
BWI76_RS00960 -1.2 -4.3 acetolactate synthase 2 catalytic subunit compare
BWI76_RS00390 -1.1 -3.0 two-component system sensor histidine kinase NtrB compare
BWI76_RS10835 -1.1 -1.6 hypothetical protein compare
BWI76_RS25600 -1.1 -1.0 tRNA-Thr compare
BWI76_RS11130 -1.1 -5.9 PTS glucose transporter subunit IIBC compare
BWI76_RS01275 -1.1 -3.9 LysR family transcriptional regulator compare
BWI76_RS15670 -1.1 -4.4 hypothetical protein compare
BWI76_RS07995 -1.1 -2.9 twin-arginine translocase subunit TatA compare
BWI76_RS19025 -1.1 -6.4 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS16920 -1.1 -1.7 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS27425 -1.1 -1.9 DNA-directed RNA polymerase subunit omega compare
BWI76_RS23580 -1.1 -1.5 hypothetical protein compare
BWI76_RS01795 -1.0 -2.3 hypothetical protein compare
BWI76_RS19035 -1.0 -4.9 dTDP-rhamnosyl transferase compare
BWI76_RS09255 -1.0 -1.7 hypothetical protein compare
BWI76_RS17290 -1.0 -2.2 formyltetrahydrofolate deformylase compare
BWI76_RS20430 -1.0 -2.2 penicillin-insensitive murein endopeptidase compare
BWI76_RS15645 -1.0 -6.3 gp6 compare
BWI76_RS17775 -1.0 -2.1 hypothetical protein compare
BWI76_RS08750 -1.0 -1.1 kinase inhibitor compare
BWI76_RS26405 -1.0 -1.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS09635 -1.0 -2.0 amino acid ABC transporter ATP-binding protein compare
BWI76_RS08395 -1.0 -1.7 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS21685 -1.0 -1.5 hypothetical protein compare
BWI76_RS21660 -1.0 -1.5 antirestriction protein compare
BWI76_RS08210 -0.9 -1.4 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS15635 -0.9 -2.6 hypothetical protein compare
BWI76_RS21310 -0.9 -1.1 DNA repair protein RecO compare
BWI76_RS20050 -0.9 -1.3 hypothetical protein compare
BWI76_RS07740 -0.9 -1.4 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS06015 -0.9 -1.1 hypothetical protein compare
BWI76_RS06530 -0.9 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS15690 -0.9 -2.5 hypothetical protein compare
BWI76_RS11300 -0.9 -1.1 cupin compare
BWI76_RS09650 -0.9 -3.3 hypothetical protein compare
BWI76_RS12285 -0.9 -2.3 hypothetical protein compare
BWI76_RS18770 -0.9 -1.1 DNA gyrase inhibitor compare
BWI76_RS08980 -0.9 -1.1 DNA starvation/stationary phase protection protein compare
BWI76_RS15680 -0.9 -2.4 hypothetical protein compare
BWI76_RS07730 -0.9 -1.1 iron-enterobactin transporter membrane protein compare
BWI76_RS22090 -0.9 -1.4 transcriptional regulator compare
BWI76_RS09625 -0.8 -1.2 hypothetical protein compare
BWI76_RS27430 -0.8 -1.3 (p)ppGpp synthetase compare
BWI76_RS15605 -0.8 -1.4 hypothetical protein compare
BWI76_RS22700 -0.8 -1.7 sulfate adenylyltransferase subunit 2 compare
BWI76_RS10575 -0.8 -1.1 polar amino acid ABC transporter permease compare
BWI76_RS06535 -0.8 -2.1 endopeptidase La compare
BWI76_RS11610 -0.8 -1.7 glutamate dehydrogenase compare
BWI76_RS25480 -0.8 -2.5 ribonuclease E/G compare
BWI76_RS13330 -0.8 -1.3 tellurite resistance methyltransferase TehB compare
BWI76_RS22705 -0.8 -4.2 siroheme synthase compare
BWI76_RS20380 -0.8 -0.8 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS15600 -0.8 -1.8 hypothetical protein compare
BWI76_RS12735 -0.8 -2.0 phage repressor protein compare
BWI76_RS11255 -0.8 -1.2 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS14650 -0.8 -2.1 helix-turn-helix transcriptional regulator compare
BWI76_RS10505 -0.8 -2.8 putative guanine/xanthin permease compare
BWI76_RS15215 -0.8 -0.9 N-acetyltransferase compare
BWI76_RS07605 -0.8 -1.9 N-acetyltransferase GCN5 compare
BWI76_RS09325 -0.8 -2.2 putative bacteriophage tail completion protein compare
BWI76_RS18905 -0.8 -1.9 putrescine/spermidine ABC transporter compare
BWI76_RS14325 -0.8 -1.9 maturase compare
BWI76_RS10465 -0.8 -2.1 hypothetical protein compare
BWI76_RS16000 -0.7 -1.1 multidrug transporter subunit MdtI compare
BWI76_RS10745 -0.7 -0.9 hypothetical protein compare
BWI76_RS16515 -0.7 -1.2 LysR family transcriptional regulator compare
BWI76_RS10625 -0.7 -4.8 hypothetical protein compare
BWI76_RS21395 -0.7 -1.5 DTW domain-containing protein compare
BWI76_RS23930 -0.7 -2.5 transcriptional regulator ArgP compare
BWI76_RS21690 -0.7 -1.7 hypothetical protein compare
BWI76_RS08820 -0.7 -2.2 molybdenum cofactor biosynthesis protein compare
BWI76_RS27310 -0.7 -3.9 glycosyltransferase compare
BWI76_RS24285 -0.7 -3.3 cystathionine beta-lyase compare
BWI76_RS03605 -0.7 -2.0 BMC domain-containing protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 13-day exudates across organisms