Experiment set10IT092 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 0.5x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS17975 +2.4 8.8 tail-specific protease compare
BWI76_RS17980 +2.3 4.9 RNA chaperone ProQ compare
BWI76_RS16965 +2.2 5.6 murein lipoprotein compare
BWI76_RS26470 +1.9 7.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS07725 +1.6 2.2 iron-enterobactin transporter permease compare
BWI76_RS21075 +1.6 1.5 membrane protein compare
BWI76_RS00140 +1.6 2.8 phosphate transport system regulator PhoU compare
BWI76_RS26455 +1.5 6.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS26390 +1.4 7.9 cell division protein FtsX compare
BWI76_RS19330 +1.4 1.6 HAD family hydrolase compare
BWI76_RS23495 +1.3 9.1 hypothetical protein compare
BWI76_RS18870 +1.3 2.2 protein NifZ compare
BWI76_RS23265 +1.3 5.0 hypothetical protein compare
BWI76_RS26460 +1.3 7.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS05465 +1.3 1.8 amidohydrolase compare
BWI76_RS23490 +1.3 7.7 fimbrial protein compare
BWI76_RS13240 +1.2 2.1 hypothetical protein compare
BWI76_RS09730 +1.2 2.4 pyruvate formate lyase 1-activating protein compare
BWI76_RS23500 +1.2 10.4 hypothetical protein compare
BWI76_RS26395 +1.2 7.7 cell division protein FtsE compare
BWI76_RS08520 +1.2 3.8 colicin transporter TolQ compare
BWI76_RS03595 +1.1 1.9 ethanolamine utilization protein EutM compare
BWI76_RS14835 +1.1 1.4 hypothetical protein compare
BWI76_RS04525 +1.1 1.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS08380 +1.0 0.9 endonuclease VIII compare
BWI76_RS11435 +1.0 1.4 hypothetical protein compare
BWI76_RS12170 +1.0 4.6 hypothetical protein compare
BWI76_RS27235 +1.0 7.4 murein hydrolase activator EnvC compare
BWI76_RS07475 +1.0 1.2 DNA-binding transcriptional regulator RamA compare
BWI76_RS09630 +0.9 3.1 leucyl/phenylalanyl-tRNA--protein transferase compare
BWI76_RS15920 +0.9 1.5 hypothetical protein compare
BWI76_RS08535 +0.9 2.1 translocation protein TolB compare
BWI76_RS11285 +0.9 1.5 transcriptional regulator compare
BWI76_RS08525 +0.8 1.3 colicin transporter compare
BWI76_RS15975 +0.8 1.2 hypothetical protein compare
BWI76_RS17720 +0.8 1.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS06745 +0.8 2.6 N-acetyltransferase GCN5 compare
BWI76_RS08530 +0.8 2.0 protein TolA compare
BWI76_RS04850 +0.8 3.0 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS23050 +0.8 2.8 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS13215 +0.8 1.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS07185 +0.8 2.0 hypothetical protein compare
BWI76_RS17530 +0.8 2.1 hypothetical protein compare
BWI76_RS06340 +0.8 0.9 hypothetical protein compare
BWI76_RS03105 +0.8 1.4 myo-inosose-2 dehydratase compare
BWI76_RS07230 +0.7 2.0 transcriptional regulator compare
BWI76_RS20880 +0.7 2.0 esterase compare
BWI76_RS13480 +0.7 1.4 XRE family transcriptional regulator compare
BWI76_RS11835 +0.7 1.6 putative regulatory protein MarR compare
BWI76_RS16805 +0.7 1.4 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS11230 +0.7 2.7 NAD-dependent deacylase compare
BWI76_RS00710 +0.7 1.7 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS14615 +0.7 1.3 hypothetical protein compare
BWI76_RS13970 +0.7 1.5 ABC transporter compare
BWI76_RS20395 +0.7 2.7 flagella biosynthesis regulator compare
BWI76_RS03815 +0.7 2.2 hypothetical protein compare
BWI76_RS18610 +0.7 1.6 transcriptional regulator LysR compare
BWI76_RS14980 +0.7 1.1 hypothetical protein compare
BWI76_RS23520 +0.7 1.4 hypothetical protein compare
BWI76_RS09940 +0.7 1.7 paraquat-inducible protein B compare
BWI76_RS09305 +0.7 1.7 hypothetical protein compare
BWI76_RS04565 +0.7 2.2 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA compare
BWI76_RS05880 +0.7 1.2 AraC-type DNA-binding domain-containing protein compare
BWI76_RS08370 +0.7 2.4 membrane protein compare
BWI76_RS10580 +0.7 2.5 amino acid ABC transporter permease compare
BWI76_RS10060 +0.7 1.3 acylphosphatase compare
BWI76_RS15205 +0.7 1.8 succinate-semialdehyde dehydrogenase compare
BWI76_RS12875 +0.6 1.7 bifunctional deaminase-reductase compare
BWI76_RS16815 +0.6 0.8 periplasmic binding protein compare
BWI76_RS19865 +0.6 1.2 ecotin compare
BWI76_RS13770 +0.6 2.3 alkylhydroperoxidase domain protein compare
BWI76_RS06045 +0.6 2.1 hypothetical protein compare
BWI76_RS16115 +0.6 3.1 fumarate hydratase compare
BWI76_RS26665 +0.6 2.1 DNA-binding response regulator compare
BWI76_RS11250 +0.6 1.2 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS22815 +0.6 4.8 hybrid sensor histidine kinase/response regulator compare
BWI76_RS24110 +0.6 1.4 YggU family protein compare
BWI76_RS13170 +0.6 1.1 methyltransferase compare
BWI76_RS16955 +0.6 1.1 hypothetical protein compare
BWI76_RS11430 +0.6 0.9 lipoprotein compare
BWI76_RS22430 +0.6 2.0 manganese/iron transporter ATP-binding protein compare
BWI76_RS09335 +0.6 1.0 baseplate assembly protein W compare
BWI76_RS21350 +0.6 2.9 anti-RNA polymerase sigma factor SigE compare
BWI76_RS09560 +0.6 1.0 DoxX family membrane protein compare
BWI76_RS05135 +0.6 2.1 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS13630 +0.6 2.2 ABC transporter compare
BWI76_RS16195 +0.6 0.7 hypothetical protein compare
BWI76_RS23345 +0.6 3.5 glycoside hydrolase compare
BWI76_RS16485 +0.6 1.5 ribonuclease T compare
BWI76_RS26440 +0.6 1.2 hypothetical protein compare
BWI76_RS02745 +0.6 1.1 hypothetical protein compare
BWI76_RS13175 +0.6 1.4 NodT family RND efflux system outer membrane lipoprotein compare
BWI76_RS06130 +0.6 1.8 extensin family protein compare
BWI76_RS12090 +0.6 2.1 HNH endonuclease compare
BWI76_RS26830 +0.6 2.8 endoglucanase compare
BWI76_RS16645 +0.6 1.6 DeoR family transcriptional regulator compare
BWI76_RS12825 +0.6 1.6 hypothetical protein compare
BWI76_RS11895 +0.6 2.0 AraC family transcriptional regulator compare
BWI76_RS19770 +0.6 1.6 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS15970 +0.6 2.1 carboxypeptidase M32 compare
BWI76_RS26750 +0.6 1.5 PfkB domain-containing protein compare
BWI76_RS14110 +0.6 1.8 C-lysozyme inhibitor compare
BWI76_RS14240 +0.6 1.9 thiol reductase thioredoxin compare
BWI76_RS16360 +0.6 0.9 electron transport complex subunit RsxB compare
BWI76_RS15050 +0.6 2.4 sugar transporter compare
BWI76_RS05205 +0.6 2.4 type I methionyl aminopeptidase compare
BWI76_RS19525 +0.6 2.5 D-alanyl-D-alanine endopeptidase compare
BWI76_RS15795 +0.6 2.2 bacteriophage CII family protein compare
BWI76_RS14930 +0.6 1.6 hypothetical protein compare
BWI76_RS26245 +0.6 1.8 transcriptional regulator compare
BWI76_RS18550 +0.6 1.2 tRNA-Asn compare
BWI76_RS17645 +0.5 1.7 hypothetical protein compare
BWI76_RS10255 +0.5 1.5 dihydrodipicolinate synthase family protein compare
BWI76_RS24810 +0.5 1.2 hypothetical protein compare
BWI76_RS09720 +0.5 2.0 PTS ascorbate transporter subunit IIB compare
BWI76_RS20760 +0.5 2.0 ethanolamine ammonia-lyase small subunit compare
BWI76_RS14390 +0.5 1.5 hypothetical protein compare
BWI76_RS11265 +0.5 1.9 peptidase T compare
BWI76_RS13710 +0.5 2.4 benzoate 1,2-dioxygenase small subunit compare
BWI76_RS21485 +0.5 3.5 DUF4154 domain-containing protein compare
BWI76_RS02220 +0.5 1.6 carbon-phosphorus lyase subunit PhnH compare
BWI76_RS26410 +0.5 1.6 membrane protein compare
BWI76_RS21165 +0.5 1.1 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS11455 +0.5 2.1 AraC family transcriptional regulator compare
BWI76_RS19495 +0.5 0.8 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS14200 +0.5 1.6 protocatechuate 4,5-dioxygenase compare
BWI76_RS05075 +0.5 0.8 type II secretion system protein GspG compare
BWI76_RS15960 +0.5 2.0 LysR family transcriptional regulator compare
BWI76_RS19585 +0.5 0.8 gentisate 1,2-dioxygenase compare
BWI76_RS22205 +0.5 1.3 cation ABC transporter ATP-binding protein compare
BWI76_RS11935 +0.5 2.1 YmiA family putative membrane protein compare
BWI76_RS05785 +0.5 2.3 CI repressor compare
BWI76_RS06505 +0.5 1.7 hypothetical protein compare
BWI76_RS01335 +0.5 1.9 DNase TatD compare
BWI76_RS09145 +0.5 1.9 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS22640 +0.5 1.4 hypothetical protein compare
BWI76_RS10770 +0.5 0.7 pyrimidine utilization protein C compare
BWI76_RS02820 +0.5 3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BWI76_RS07325 +0.5 1.9 aminoimidazole riboside kinase compare
BWI76_RS09065 +0.5 2.0 sugar phosphatase SupH compare
BWI76_RS16695 +0.5 3.1 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein compare
BWI76_RS04605 +0.5 0.9 thiamine ABC transporter ATP-binding protein compare
BWI76_RS22185 +0.5 2.0 hypothetical protein compare
BWI76_RS18065 +0.5 1.1 DNA polymerase III subunit theta compare
BWI76_RS20030 +0.5 1.6 DNA-binding response regulator compare
BWI76_RS00285 +0.5 2.1 D-ribose ABC transporter substrate-binding protein compare
BWI76_RS13895 +0.5 1.1 LysR family transcriptional regulator compare
BWI76_RS12670 +0.5 1.0 DNA polymerase V subunit UmuD compare
BWI76_RS17765 +0.5 1.5 hypothetical protein compare
BWI76_RS20065 +0.5 2.3 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
BWI76_RS05680 +0.5 2.2 LacI family transcriptional regulator compare
BWI76_RS05950 +0.5 1.0 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS16315 +0.5 0.8 SirA-like protein compare
BWI76_RS22845 +0.5 2.5 flavodoxin compare
BWI76_RS13220 +0.5 1.4 N-acetyltransferase compare
BWI76_RS09360 +0.5 2.1 hypothetical protein compare
BWI76_RS09330 +0.5 1.8 baseplate assembly protein V compare
BWI76_RS11010 +0.5 1.3 30S ribosomal protein S5 alanine N-acetyltransferase compare
BWI76_RS00885 +0.5 2.1 tRNA (uridine(54)-C5)-methyltransferase TrmA compare
BWI76_RS08840 +0.5 0.6 hypothetical protein compare
BWI76_RS06375 +0.5 2.2 oxidoreductase compare
BWI76_RS03175 +0.5 2.3 hypothetical protein compare
BWI76_RS12860 +0.5 1.3 hypothetical protein compare
BWI76_RS23125 +0.5 0.7 propanediol dehydratase small subunit compare
BWI76_RS04400 +0.5 2.0 alanyl-tRNA synthetase compare
BWI76_RS01715 +0.5 2.0 shikimate 5-dehydrogenase compare
BWI76_RS18470 +0.5 1.3 hypothetical protein compare
BWI76_RS18410 +0.5 1.8 drug/metabolite exporter YedA compare
BWI76_RS20915 +0.5 3.2 peroxiredoxin compare
BWI76_RS24240 +0.5 1.2 hypothetical protein compare
BWI76_RS15095 +0.5 1.7 isochorismatase compare
BWI76_RS00095 +0.5 1.3 DNA-binding transcriptional regulator compare
BWI76_RS25285 +0.5 0.6 HPr family phosphocarrier protein compare
BWI76_RS25225 +0.5 1.7 ABC transporter permease compare
BWI76_RS06665 +0.5 1.5 membrane protein compare
BWI76_RS03450 +0.5 3.1 MFS transporter compare
BWI76_RS14975 +0.4 1.5 glyoxalase-like domain protein compare
BWI76_RS19145 +0.4 1.0 formate dehydrogenase cytochrome b556 subunit compare
BWI76_RS02205 +0.4 2.8 phosphonate C-P lyase system protein PhnK compare
BWI76_RS19890 +0.4 1.3 alpha-ketoglutarate-dependent dioxygenase AlkB compare
BWI76_RS15305 +0.4 2.4 O-acetylserine/cysteine exporter compare
BWI76_RS06565 +0.4 2.5 putative periplasmic solute-binding protein compare
BWI76_RS09830 +0.4 1.0 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
BWI76_RS25160 +0.4 1.1 transcription elongation factor GreA compare
BWI76_RS05870 +0.4 1.9 ABC transporter compare
BWI76_RS15535 +0.4 1.0 hypothetical protein compare
BWI76_RS17715 +0.4 1.4 murein transglycosylase compare
BWI76_RS03835 +0.4 1.9 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
BWI76_RS13605 +0.4 2.5 porin compare
BWI76_RS12470 +0.4 0.9 thiosulfate sulfurtransferase PspE compare
BWI76_RS21565 +0.4 0.7 outer membrane protein assembly factor BamE compare
BWI76_RS10805 +0.4 1.2 hypothetical protein compare
BWI76_RS22435 +0.4 1.9 iron ABC transporter permease AfeC compare
BWI76_RS18365 +0.4 2.1 cystine ABC transporter substrate-binding protein compare
BWI76_RS18755 +0.4 0.6 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS14310 +0.4 2.2 hypothetical protein compare
BWI76_RS00740 +0.4 1.6 ribonuclease E activity regulator RraA compare
BWI76_RS26670 +0.4 2.6 two-component sensor histidine kinase compare
BWI76_RS16800 +0.4 1.2 amino acid ABC transporter permease compare
BWI76_RS26345 +0.4 1.8 branched-chain amino acid ABC transporter permease LivH compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 13-day exudates across organisms