Experiment set10IT091 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 0.25x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS17980 +1.9 6.6 RNA chaperone ProQ compare
BWI76_RS17975 +1.7 6.3 tail-specific protease compare
BWI76_RS06930 +1.7 12.1 iron export ABC transporter permease subunit FetB compare
BWI76_RS00140 +1.7 3.0 phosphate transport system regulator PhoU compare
BWI76_RS06925 +1.6 10.3 iron ABC transporter ATP-binding protein FetA compare
BWI76_RS21075 +1.5 2.0 membrane protein compare
BWI76_RS16965 +1.3 5.2 murein lipoprotein compare
BWI76_RS11285 +1.2 2.2 transcriptional regulator compare
BWI76_RS23895 +1.2 1.4 Xaa-Pro aminopeptidase compare
BWI76_RS08520 +1.1 3.1 colicin transporter TolQ compare
BWI76_RS06340 +1.1 1.5 hypothetical protein compare
BWI76_RS09530 +1.1 1.3 hypothetical protein compare
BWI76_RS14980 +1.0 2.1 hypothetical protein compare
BWI76_RS17325 +1.0 2.8 nitrate reductase molybdenum cofactor assembly chaperone compare
BWI76_RS26455 +1.0 3.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS19330 +1.0 1.1 HAD family hydrolase compare
BWI76_RS12610 +1.0 2.1 LysR family transcriptional regulator compare
BWI76_RS13545 +1.0 1.6 N-acetyltransferase compare
BWI76_RS26245 +0.9 2.5 transcriptional regulator compare
BWI76_RS09305 +0.9 1.8 hypothetical protein compare
BWI76_RS16805 +0.9 1.9 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS09625 +0.9 1.9 hypothetical protein compare
BWI76_RS26460 +0.9 3.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS08530 +0.9 2.7 protein TolA compare
BWI76_RS26470 +0.8 3.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS11460 +0.8 3.4 DUF441 family protein compare
BWI76_RS05555 +0.8 2.4 Crl family RNA polymerase assembly factor compare
BWI76_RS20085 +0.8 2.5 GNAT family N-acetyltransferase compare
BWI76_RS25365 +0.8 5.6 serine endoprotease DegQ compare
BWI76_RS12605 +0.8 3.6 hypothetical protein compare
BWI76_RS12745 +0.8 3.6 putative prophage membrane protein compare
BWI76_RS04270 +0.8 4.0 transaldolase compare
BWI76_RS18130 +0.8 2.3 zinc ABC transporter substrate-binding protein compare
BWI76_RS17330 +0.8 2.1 nitrate reductase subunit beta compare
BWI76_RS08330 +0.8 1.6 hypothetical protein compare
BWI76_RS06015 +0.8 1.7 hypothetical protein compare
BWI76_RS14415 +0.8 2.0 transcriptional regulator, TetR family protein compare
BWI76_RS14505 +0.7 1.1 salicylate synthase Irp9 compare
BWI76_RS09080 +0.7 1.8 molybdopterin-synthase adenylyltransferase MoeB compare
BWI76_RS14200 +0.7 3.0 protocatechuate 4,5-dioxygenase compare
BWI76_RS05465 +0.7 1.0 amidohydrolase compare
BWI76_RS17770 +0.7 2.2 isomerase/hydrolase compare
BWI76_RS12680 +0.7 1.9 oxidoreductase compare
BWI76_RS05680 +0.7 3.6 LacI family transcriptional regulator compare
BWI76_RS08525 +0.7 2.3 colicin transporter compare
BWI76_RS12550 +0.7 1.3 hypothetical protein compare
BWI76_RS13130 +0.7 2.1 phenylacetic acid degradation protein PaaD compare
BWI76_RS05655 +0.7 1.3 hypothetical protein compare
BWI76_RS23495 +0.7 5.3 hypothetical protein compare
BWI76_RS11990 +0.7 4.5 exoribonuclease II compare
BWI76_RS12125 +0.7 1.5 hypothetical protein compare
BWI76_RS08405 +0.7 1.7 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS15845 +0.7 1.1 hypothetical protein compare
BWI76_RS17155 +0.7 1.6 hypothetical protein compare
BWI76_RS16510 +0.7 2.0 transcriptional repressor PurR compare
BWI76_RS14835 +0.7 0.7 hypothetical protein compare
BWI76_RS01585 +0.7 4.4 transcriptional regulator compare
BWI76_RS23500 +0.7 6.1 hypothetical protein compare
BWI76_RS07510 +0.7 2.0 hypothetical protein compare
BWI76_RS16490 +0.7 1.7 glutaredoxin compare
BWI76_RS06375 +0.7 1.8 oxidoreductase compare
BWI76_RS06745 +0.7 1.5 N-acetyltransferase GCN5 compare
BWI76_RS15290 +0.7 1.3 transcriptional regulator compare
BWI76_RS00345 +0.7 1.8 protein disulfide oxidoreductase DsbA compare
BWI76_RS27235 +0.7 4.5 murein hydrolase activator EnvC compare
BWI76_RS21235 +0.7 0.9 hypothetical protein compare
BWI76_RS12520 +0.7 3.5 hypothetical protein compare
BWI76_RS23490 +0.7 4.1 fimbrial protein compare
BWI76_RS09030 +0.7 4.2 transpeptidase compare
BWI76_RS04565 +0.7 2.2 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA compare
BWI76_RS11455 +0.7 1.9 AraC family transcriptional regulator compare
BWI76_RS05440 +0.7 4.3 hydroxyacylglutathione hydrolase compare
BWI76_RS16815 +0.6 1.6 periplasmic binding protein compare
BWI76_RS06130 +0.6 1.8 extensin family protein compare
BWI76_RS15190 +0.6 3.0 GGDEF domain-containing protein compare
BWI76_RS11700 +0.6 1.1 hypothetical protein compare
BWI76_RS26580 +0.6 2.9 universal stress protein A compare
BWI76_RS22020 +0.6 2.0 L-alanine exporter AlaE compare
BWI76_RS19280 +0.6 2.6 U32 family peptidase compare
BWI76_RS13630 +0.6 2.0 ABC transporter compare
BWI76_RS02895 +0.6 1.8 hypothetical protein compare
BWI76_RS01935 +0.6 1.0 thiamin phosphate synthase compare
BWI76_RS10935 +0.6 3.0 glucan biosynthesis glucosyltransferase H compare
BWI76_RS13685 +0.6 1.7 IclR family transcriptional regulator compare
BWI76_RS21350 +0.6 1.6 anti-RNA polymerase sigma factor SigE compare
BWI76_RS04850 +0.6 2.1 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS08500 +0.6 1.3 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS13970 +0.6 1.2 ABC transporter compare
BWI76_RS17180 +0.6 2.2 hypothetical protein compare
BWI76_RS07640 +0.6 0.8 short chain dehydrogenase compare
BWI76_RS19840 +0.6 0.9 hypothetical protein compare
BWI76_RS06560 +0.6 2.2 7-cyano-7-deazaguanine synthase QueC compare
BWI76_RS08345 +0.6 1.3 Nif3-like dinuclear metal center protein compare
BWI76_RS14030 +0.6 1.5 ABC transporter permease compare
BWI76_RS15130 +0.6 2.3 hypothetical protein compare
BWI76_RS02655 +0.6 1.6 hypothetical protein compare
BWI76_RS09445 +0.6 2.4 NADPH-dependent oxidoreductase compare
BWI76_RS19690 +0.6 1.4 LysR family transcriptional regulator compare
BWI76_RS16150 +0.6 0.8 IclR family transcriptional regulator compare
BWI76_RS10340 +0.6 3.0 hypothetical protein compare
BWI76_RS03815 +0.6 1.8 hypothetical protein compare
BWI76_RS15760 +0.6 1.0 hypothetical protein compare
BWI76_RS13240 +0.6 0.9 hypothetical protein compare
BWI76_RS24820 +0.6 2.7 glycerate 2-kinase compare
BWI76_RS12420 +0.6 0.9 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS14040 +0.6 1.1 thiaminase compare
BWI76_RS19440 +0.6 2.2 putative transporter subunit compare
BWI76_RS06735 +0.6 1.3 50S ribosomal protein L31 compare
BWI76_RS05885 +0.6 1.4 anion permease compare
BWI76_RS23760 +0.6 1.2 tRNA-Gly compare
BWI76_RS08390 +0.6 1.7 hypothetical protein compare
BWI76_RS24345 +0.6 2.2 NADPH quinone reductase MdaB compare
BWI76_RS00330 +0.5 3.7 molybdenum cofactor guanylyltransferase compare
BWI76_RS27395 +0.5 2.4 hypothetical protein compare
BWI76_RS05005 +0.5 1.8 polynucleotide adenylyltransferase compare
BWI76_RS21505 +0.5 0.9 hypothetical protein compare
BWI76_RS07255 +0.5 1.5 hypothetical protein compare
BWI76_RS09905 +0.5 2.0 FMN reductase (NADPH) compare
BWI76_RS05880 +0.5 0.8 AraC-type DNA-binding domain-containing protein compare
BWI76_RS11445 +0.5 1.5 hypothetical protein compare
BWI76_RS14820 +0.5 1.4 LysR family transcriptional regulator compare
BWI76_RS07635 +0.5 2.0 Hok/gef cell toxic protein compare
BWI76_RS17715 +0.5 2.3 murein transglycosylase compare
BWI76_RS16775 +0.5 1.9 malate/lactate/ureidoglycolate dehydrogenase compare
BWI76_RS22430 +0.5 2.2 manganese/iron transporter ATP-binding protein compare
BWI76_RS20795 +0.5 1.0 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS02690 +0.5 1.5 hypothetical protein compare
BWI76_RS19550 +0.5 2.3 phospho-cellobiase compare
BWI76_RS09145 +0.5 2.1 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS22815 +0.5 3.5 hybrid sensor histidine kinase/response regulator compare
BWI76_RS12985 +0.5 1.1 transcriptional regulator compare
BWI76_RS14815 +0.5 2.2 MdaB protein compare
BWI76_RS14065 +0.5 0.7 hypothetical protein compare
BWI76_RS20230 +0.5 0.5 hypothetical protein compare
BWI76_RS16035 +0.5 1.7 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS07435 +0.5 2.6 LacI family transcriptional regulator compare
BWI76_RS26390 +0.5 1.7 cell division protein FtsX compare
BWI76_RS24040 +0.5 1.9 hypothetical protein compare
BWI76_RS18125 +0.5 2.0 murein DD-endopeptidase MepM compare
BWI76_RS21780 +0.5 2.5 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS14010 +0.5 1.8 SDR family oxidoreductase compare
BWI76_RS20995 +0.5 2.1 RNA degradosome polyphosphate kinase compare
BWI76_RS20380 +0.5 0.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS08815 +0.5 2.5 cyclic pyranopterin phosphate synthase compare
BWI76_RS21595 +0.5 2.4 hypothetical protein compare
BWI76_RS14240 +0.5 1.7 thiol reductase thioredoxin compare
BWI76_RS17315 +0.5 1.8 EamA family transporter compare
BWI76_RS12460 +0.5 1.7 envelope stress response membrane protein PspC compare
BWI76_RS16080 +0.5 1.6 LysR family transcriptional regulator compare
BWI76_RS03665 +0.5 1.0 ABC transporter ATP-binding protein compare
BWI76_RS09830 +0.5 1.2 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
BWI76_RS12650 +0.5 2.5 membrane protein compare
BWI76_RS00025 +0.5 0.7 hypothetical protein compare
BWI76_RS18065 +0.5 1.1 DNA polymerase III subunit theta compare
BWI76_RS11010 +0.5 2.2 30S ribosomal protein S5 alanine N-acetyltransferase compare
BWI76_RS01380 +0.5 1.6 YigZ family protein compare
BWI76_RS09390 +0.5 1.3 phage tail protein compare
BWI76_RS14715 +0.5 1.7 type I methionyl aminopeptidase compare
BWI76_RS26440 +0.5 1.1 hypothetical protein compare
BWI76_RS05985 +0.5 1.8 branched-chain amino acid ABC transporter permease compare
BWI76_RS08515 +0.5 1.4 acyl-CoA thioesterase YbgC compare
BWI76_RS23665 +0.5 2.2 2-deoxyribose-5-phosphate aldolase compare
BWI76_RS13660 +0.5 1.4 nitrate reductase subunit beta compare
BWI76_RS21130 +0.5 1.3 Fe-S assembly protein IscX compare
BWI76_RS25925 +0.5 1.8 hypothetical protein compare
BWI76_RS17350 +0.5 1.7 DNA-binding response regulator compare
BWI76_RS22420 +0.5 0.9 LacI family transcriptional regulator compare
BWI76_RS24765 +0.5 1.3 membrane protein compare
BWI76_RS26395 +0.5 1.6 cell division protein FtsE compare
BWI76_RS15205 +0.5 1.3 succinate-semialdehyde dehydrogenase compare
BWI76_RS24745 +0.5 1.2 membrane protein compare
BWI76_RS01190 +0.5 1.3 iron donor protein CyaY compare
BWI76_RS15275 +0.5 1.9 isomerase compare
BWI76_RS18190 +0.5 1.8 carboxy-S-adenosyl-L-methionine synthase CmoA compare
BWI76_RS17320 +0.5 2.3 respiratory nitrate reductase subunit gamma compare
BWI76_RS13080 +0.5 2.6 tyramine oxidase compare
BWI76_RS04145 +0.5 1.8 purine-nucleoside phosphorylase compare
BWI76_RS18885 +0.5 1.4 nitrogen fixation regulatory protein compare
BWI76_RS11345 +0.5 1.7 LysR family transcriptional regulator compare
BWI76_RS01095 +0.5 0.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS14965 +0.5 1.0 AraC family transcriptional regulator compare
BWI76_RS23705 +0.5 1.2 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS07385 +0.5 1.9 short-chain dehydrogenase/reductase SDR compare
BWI76_RS08825 +0.5 1.4 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS08370 +0.5 1.6 membrane protein compare
BWI76_RS09615 +0.5 1.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS18425 +0.5 1.7 phosphohydrolase compare
BWI76_RS08835 +0.5 2.4 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS25865 +0.5 2.5 ferredoxin compare
BWI76_RS08665 +0.5 2.3 6-phosphogluconolactonase compare
BWI76_RS15920 +0.5 0.7 hypothetical protein compare
BWI76_RS01565 +0.5 1.0 NADH pyrophosphatase compare
BWI76_RS26625 +0.5 1.8 gluconate transporter periplasmic gluconate-binding protein compare
BWI76_RS08545 +0.4 1.2 cell division protein CpoB compare
BWI76_RS18675 +0.4 1.6 fimbrial protein compare
BWI76_RS20700 +0.4 2.0 sulfate/thiosulfate transporter subunit compare
BWI76_RS10255 +0.4 1.9 dihydrodipicolinate synthase family protein compare
BWI76_RS27760 +0.4 1.7 lactam utilization protein LamB compare
BWI76_RS19870 +0.4 0.8 malate:quinone oxidoreductase compare
BWI76_RS08350 +0.4 2.5 carboxylase compare


Specific Phenotypes

For 2 genes in this experiment

For exudates Brachypodium distachyon 13-day exudates in Klebsiella michiganensis M5al

For exudates Brachypodium distachyon 13-day exudates across organisms