Experiment set10IT091 for Herbaspirillum seropedicae SmR1

Compare to:

Dictyostellum sp.mixed culture-1

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS10265 +2.3 8.3 flagellar biosynthesis protein FliO compare
HSERO_RS13890 +2.1 15.6 LuxR family transcriptional regulator compare
HSERO_RS10150 +2.1 15.6 flagellar biosynthesis regulator FlhF compare
HSERO_RS10260 +2.1 11.3 flagellar biosynthesis protein FliP compare
HSERO_RS14985 +2.1 15.4 transcriptional regulator compare
HSERO_RS10310 +1.9 14.1 flagellar M-ring protein FliF compare
HSERO_RS13885 +1.9 17.1 histidine kinase compare
HSERO_RS10305 +1.9 12.7 flagellar motor switch protein FliG compare
HSERO_RS10255 +1.9 11.8 flagellar biosynthesis protein FliQ compare
HSERO_RS10165 +1.9 9.1 flagellar biosynthesis protein compare
HSERO_RS10145 +1.8 14.7 flagellar biosynthesis protein FlhA compare
HSERO_RS19265 +1.8 2.8 LysR family transcriptional regulator compare
HSERO_RS10275 +1.8 16.4 flagellar motor switch protein FliM compare
HSERO_RS10250 +1.7 13.7 flagellar biosynthesis protein FliR compare
HSERO_RS10355 +1.7 10.0 flagellin compare
HSERO_RS10175 +1.7 8.7 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS10295 +1.7 10.5 ATP synthase compare
HSERO_RS10140 +1.7 10.1 flagellar biosynthesis protein FlhB compare
HSERO_RS10290 +1.7 7.8 flagellar biosynthesis protein FliJ compare
HSERO_RS21375 +1.6 3.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS10200 +1.6 9.1 flagellar basal body rod protein FlgF compare
HSERO_RS00910 +1.6 13.4 peptidase compare
HSERO_RS10190 +1.6 5.0 flagellar basal body rod modification protein FlgD compare
HSERO_RS00915 +1.5 10.7 ATP-dependent protease compare
HSERO_RS10215 +1.5 8.4 flagellar P-ring protein FlgI compare
HSERO_RS10285 +1.5 7.7 flagellar hook-length control protein compare
HSERO_RS10185 +1.5 11.9 flagellar basal body rod protein FlgC compare
HSERO_RS10600 +1.5 6.0 diguanylate phosphodiesterase compare
HSERO_RS20985 +1.5 1.7 serine acetyltransferase compare
HSERO_RS20265 +1.5 2.4 hypothetical protein compare
HSERO_RS14975 +1.5 9.7 flagellar motor protein MotA compare
HSERO_RS10225 +1.4 9.3 flagellar hook protein FlgK compare
HSERO_RS10180 +1.4 3.4 flagellar biosynthesis protein FlgB compare
HSERO_RS10160 +1.4 10.5 flagellar biosynthesis sigma factor compare
HSERO_RS03110 +1.4 7.3 chemotaxis protein CheA compare
HSERO_RS10195 +1.4 12.6 flagellar hook protein FlgE compare
HSERO_RS10280 +1.4 3.4 flagellar basal body protein FliL compare
HSERO_RS05855 +1.3 9.6 flagellar motor protein MotA compare
HSERO_RS02340 +1.3 10.0 dihydroorotase compare
HSERO_RS22065 +1.3 5.0 EpiA compare
HSERO_RS03135 +1.3 4.3 diguanylate cyclase compare
HSERO_RS22070 +1.3 6.2 CDP-4-keto-6-deoxy-D-glucose-3-dehydrase compare
HSERO_RS22100 +1.3 9.2 hypothetical protein compare
HSERO_RS10230 +1.3 10.0 flagellar hook-filament junction protein compare
HSERO_RS01985 +1.3 6.8 energy transducer TonB compare
HSERO_RS06170 +1.3 3.4 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS10340 +1.3 2.8 flagellar biosynthesis protein FliS compare
HSERO_RS03105 +1.2 6.6 anti-sigma factor antagonist compare
HSERO_RS22075 +1.2 6.6 phosphohexose mutase compare
HSERO_RS22090 +1.2 6.7 hypothetical protein compare
HSERO_RS02325 +1.2 5.4 uracil phosphoribosyltransferase compare
HSERO_RS15670 +1.2 5.4 major facilitator transporter compare
HSERO_RS22060 +1.2 6.1 kinase compare
HSERO_RS14965 +1.2 3.3 chemotaxis protein compare
HSERO_RS20250 +1.2 0.5 large conductance mechanosensitive channel protein MscL compare
HSERO_RS14185 +1.2 2.0 FeS cluster assembly scaffold IscU compare
HSERO_RS21745 +1.1 1.5 5'-methylthioadenosine nucleosidase compare
HSERO_RS10315 +1.1 2.9 flagellar hook-basal body protein FliE compare
HSERO_RS10360 +1.1 6.7 hypothetical protein compare
HSERO_RS10115 +1.1 3.5 chemotaxis protein CheR compare
HSERO_RS15530 +1.1 4.0 chemotaxis protein CheZ compare
HSERO_RS14955 +1.1 5.5 chemotaxis protein compare
HSERO_RS10120 +1.1 2.4 chemotaxis protein CheD compare
HSERO_RS14970 +1.1 6.8 flagellar motor protein MotB compare
HSERO_RS23450 +1.0 3.2 hypothetical protein compare
HSERO_RS22015 +1.0 3.0 DNA-binding protein compare
HSERO_RS00965 +1.0 1.1 trehalose-phosphatase compare
HSERO_RS12730 +1.0 7.1 succinylglutamate desuccinylase compare
HSERO_RS15535 +1.0 7.0 chemotaxis protein CheA compare
HSERO_RS16835 +1.0 5.4 phosphatidylglycerophosphatase compare
HSERO_RS23840 +1.0 7.6 hypothetical protein compare
HSERO_RS01525 +1.0 4.4 hypothetical protein compare
HSERO_RS18455 +1.0 2.9 phosphoglycolate phosphatase compare
HSERO_RS16490 +1.0 7.2 FimV compare
HSERO_RS01915 +1.0 7.2 membrane protein compare
HSERO_RS10205 +0.9 2.8 flagellar basal body rod protein FlgG compare
HSERO_RS21470 +0.9 4.1 hypothetical protein compare
HSERO_RS17180 +0.9 1.9 paraquat-inducible protein A compare
HSERO_RS01490 +0.9 4.2 guanylate cyclase compare
HSERO_RS11590 +0.9 2.2 hypothetical protein compare
HSERO_RS06175 +0.9 3.0 queuine tRNA-ribosyltransferase compare
HSERO_RS12735 +0.9 1.5 GNAT family acetyltransferase compare
HSERO_RS05860 +0.9 3.0 biopolymer transporter ExbD compare
HSERO_RS10210 +0.9 2.6 flagellar L-ring protein FlgH compare
HSERO_RS01510 +0.9 4.9 membrane protein compare
HSERO_RS00745 +0.9 2.0 alkylhydroperoxidase compare
HSERO_RS17830 +0.8 3.1 rhodanese compare
HSERO_RS15600 +0.8 3.5 cytosol aminopeptidase compare
HSERO_RS03120 +0.8 2.2 chemotaxis protein CheW compare
HSERO_RS02405 +0.8 5.0 multidrug transporter compare
HSERO_RS08270 +0.8 3.8 amino acid ABC transporter substrate-binding protein compare
HSERO_RS08285 +0.8 2.4 amino acid ABC transporter ATP-binding protein compare
HSERO_RS08320 +0.8 2.6 amino acid ABC transporter substrate-binding protein compare
HSERO_RS14170 +0.8 1.6 thioredoxin compare
HSERO_RS19175 +0.8 2.3 twitching motility protein compare
HSERO_RS13040 +0.8 2.3 hypothetical protein compare
HSERO_RS12780 +0.8 4.9 diguanylate phosphodiesterase compare
HSERO_RS05440 +0.8 1.3 hypothetical protein compare
HSERO_RS08055 +0.8 2.0 cytochrome C compare
HSERO_RS18895 +0.8 3.1 alkane 1-monooxygenase compare
HSERO_RS01505 +0.8 1.6 transketolase compare
HSERO_RS17570 +0.8 1.5 4-carboxymuconolactone decarboxylase compare
HSERO_RS09250 +0.7 1.7 hypothetical protein compare
HSERO_RS12105 +0.7 3.4 RpiR family transcriptional regulator compare
HSERO_RS08280 +0.7 4.7 leucine/isoleucine/valine transporter permease subunit compare
HSERO_RS11160 +0.7 1.2 glutamine amidotransferase compare
HSERO_RS02410 +0.7 5.7 acriflavine resistance protein B compare
HSERO_RS01535 +0.7 3.8 phosphohydrolase with GAF sensor compare
HSERO_RS07995 +0.7 2.3 hypothetical protein compare
HSERO_RS20765 +0.7 1.5 membrane protein compare
HSERO_RS01515 +0.7 3.7 hemin-binding protein compare
HSERO_RS21725 +0.7 3.6 polyketide cyclase compare
HSERO_RS13880 +0.7 1.0 hypothetical protein compare
HSERO_RS04555 +0.7 2.4 capsid protein compare
HSERO_RS03500 +0.7 1.7 uracil phosphoribosyltransferase compare
HSERO_RS01720 +0.7 1.8 membrane protein compare
HSERO_RS04970 +0.7 1.2 dioxygenase compare
HSERO_RS21875 +0.7 1.4 endoribonuclease L-PSP compare
HSERO_RS17285 +0.7 1.5 chromate transporter compare
HSERO_RS01500 +0.7 2.0 transketolase compare
HSERO_RS11535 +0.7 2.2 membrane protein compare
HSERO_RS03015 +0.7 1.7 hypothetical protein compare
HSERO_RS00265 +0.7 2.5 threonine dehydratase compare
HSERO_RS18050 +0.7 1.7 glycerophosphodiester phosphodiesterase compare
HSERO_RS13660 +0.7 1.4 membrane protein compare
HSERO_RS04220 +0.7 2.4 epoxyqueuosine reductase compare
HSERO_RS09525 +0.6 1.7 transcriptional regulator compare
HSERO_RS00330 +0.6 2.7 SAM-dependent methyltransferase compare
HSERO_RS01020 +0.6 1.5 hypothetical protein compare
HSERO_RS22105 +0.6 3.6 glycosyl transferase compare
HSERO_RS16485 +0.6 2.7 tRNA pseudouridine synthase A compare
HSERO_RS01295 +0.6 4.2 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
HSERO_RS15355 +0.6 2.3 hypothetical protein compare
HSERO_RS04235 +0.6 2.8 C4-dicarboxylate ABC transporter compare
HSERO_RS08005 +0.6 2.3 Pb-specific transcription regulator protein compare
HSERO_RS02415 +0.6 4.2 hemolysin D compare
HSERO_RS19630 +0.6 0.3 AMP nucleosidase compare
HSERO_RS08275 +0.6 2.3 branched-chain amino acid transporter permease subunit LivH compare
HSERO_RS02425 +0.6 2.4 transcriptional activator compare
HSERO_RS10955 +0.6 2.0 hypothetical protein compare
HSERO_RS00890 +0.6 2.1 L-proline ABC transporter, permease component 2 (from data) compare
HSERO_RS10605 +0.6 1.6 membrane protein compare
HSERO_RS03995 +0.6 1.1 hypothetical protein compare
HSERO_RS04270 +0.6 2.6 membrane protein compare
HSERO_RS12215 +0.6 1.3 alpha/beta hydrolase superfamily protein compare
HSERO_RS04265 +0.6 0.9 tyrosine recombinase XerD compare
HSERO_RS16385 +0.6 1.7 beta-lactamase compare
HSERO_RS07280 +0.6 3.0 hypothetical protein compare
HSERO_RS19815 +0.6 3.9 phytanoyl-CoA dioxygenase compare
HSERO_RS08640 +0.6 1.1 hypothetical protein compare
HSERO_RS23150 +0.6 1.5 AraC family transcriptional regulator compare
HSERO_RS19155 +0.6 1.6 LysR family transcriptional regulator compare
HSERO_RS03840 +0.6 1.8 hypothetical protein compare
HSERO_RS11980 +0.6 1.8 hypothetical protein compare
HSERO_RS08340 +0.6 1.5 AsnC family transcriptional regulator compare
HSERO_RS21380 +0.6 3.8 MFS transporter compare
HSERO_RS01880 +0.6 1.9 N-acetyl-anhydromuranmyl-L-alanine amidase compare
HSERO_RS18290 +0.6 2.4 muconate cycloisomerase compare
HSERO_RS15205 +0.6 1.2 LysR family transcriptional regulator compare
HSERO_RS17855 +0.6 2.8 DEAD/DEAH box helicase compare
HSERO_RS01520 +0.6 4.4 hemagglutinin compare
HSERO_RS14425 +0.6 1.2 hypothetical protein compare
HSERO_RS11850 +0.6 0.7 hypothetical protein compare
HSERO_RS09055 +0.6 1.3 hypothetical protein compare
HSERO_RS12470 +0.6 0.8 chemotaxis protein CheY compare
HSERO_RS23255 +0.6 2.2 ABC transporter permease compare
HSERO_RS11835 +0.6 2.0 hypothetical protein compare
HSERO_RS02735 +0.6 0.7 hypothetical protein compare
HSERO_RS11890 +0.5 2.2 histidine kinase compare
HSERO_RS15240 +0.5 1.7 XRE family transcriptional regulator compare
HSERO_RS23205 +0.5 1.5 3-beta hydroxysteroid dehydrogenase compare
HSERO_RS19915 +0.5 2.7 IclR family transcriptional regulator compare
HSERO_RS15915 +0.5 1.7 hypothetical protein compare
HSERO_RS15095 +0.5 1.4 AraC family transcriptional regulator compare
HSERO_RS16920 +0.5 3.3 chemotaxis protein CheB compare
HSERO_RS09215 +0.5 1.3 D-aminopeptidase compare
HSERO_RS03475 +0.5 1.6 NUDIX hydrolase compare
HSERO_RS16100 +0.5 3.2 acetylornithine deacetylase compare
HSERO_RS06505 +0.5 2.6 hypothetical protein compare
HSERO_RS02555 +0.5 3.0 chemotaxis protein compare
HSERO_RS01145 +0.5 1.6 inner membrane protein compare
HSERO_RS09480 +0.5 1.5 radical SAM protein compare
HSERO_RS19665 +0.5 1.7 glycosyl hydrolase compare
HSERO_RS17850 +0.5 1.0 glutamyl-Q tRNA(Asp) ligase compare
HSERO_RS06005 +0.5 1.7 hypothetical protein compare
HSERO_RS14150 +0.5 1.2 RNA polymerase sigma factor compare
HSERO_RS22020 +0.5 1.9 membrane protein compare
HSERO_RS10155 +0.5 1.8 antiactivator of flagellar biosynthesis FleN protein compare
HSERO_RS01600 +0.5 1.1 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase compare
HSERO_RS20775 +0.5 0.8 membrane protein compare
HSERO_RS09090 +0.5 2.3 hypothetical protein compare
HSERO_RS10070 +0.5 1.2 hypothetical protein compare
HSERO_RS11115 +0.5 1.1 citrate transporter compare
HSERO_RS12965 +0.5 1.4 phytoene synthase compare
HSERO_RS13770 +0.5 1.0 polysaccharide deacetylase compare
HSERO_RS21710 +0.5 1.8 antibiotic resistance protein MarC compare
HSERO_RS02335 +0.5 1.8 excinuclease ABC subunit C compare
HSERO_RS20770 +0.5 2.3 MFS transporter compare
HSERO_RS13845 +0.5 1.4 hypothetical protein compare
HSERO_RS02230 +0.5 3.1 methyl-accepting chemotaxis protein compare


Specific Phenotypes

For 6 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Herbaspirillum seropedicae SmR1

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms