Experiment set10IT091 for Bifidobacterium breve UCC2003

Compare to:

diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6

200 most important genes:

  gene name fitness t score description  
BBR_RS21165 -6.3 -2.1 hypothetical protein compare
BBR_RS20245 -5.7 -7.8 cation-translocating P-type ATPase compare
BBR_RS19740 -5.7 -6.7 DUF2142 domain-containing protein compare
BBR_RS20180 -5.6 -3.9 carbohydrate ABC transporter permease compare
BBR_RS19200 -5.6 -3.9 hypothetical protein compare
BBR_RS19240 -5.6 -3.9 LacI family transcriptional regulator compare
BBR_RS20195 -5.5 -3.8 ROK family transcriptional regulator compare
BBR_RS20185 -5.5 -3.8 sugar ABC transporter permease compare
BBR_RS11410 -5.5 -3.8 iron permease compare
BBR_RS20660 -5.5 -3.8 hypothetical protein compare
BBR_RS12550 -5.4 -3.8 sugar transferase compare
BBR_RS11240 -5.4 -2.1 GtrA family protein compare
BBR_RS19205 -5.3 -3.7 Evolved beta-galactosidase subunit alpha compare
BBR_RS11135 -5.3 -3.7 dihydrodipicolinate synthase family protein compare
BBR_RS12910 -5.3 -3.7 galactokinase compare
BBR_RS18595 -5.3 -5.2 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS20190 -5.3 -3.7 Raffinose-binding protein compare
BBR_RS20200 -5.3 -3.7 alpha-galactosidase compare
BBR_RS20175 -5.3 -3.7 LacI family transcriptional regulator compare
BBR_RS20750 -5.3 -1.8 GntR family transcriptional regulator compare
BBR_RS10565 -5.2 -22.1 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS19010 -5.2 -5.1 glycoside hydrolase family 1 protein compare
BBR_RS12510 -5.1 -3.6 beta-galactosidase compare
BBR_RS20655 -5.1 -3.5 hypothetical protein compare
BBR_RS12450 -5.0 -2.4 signal peptidase I compare
BBR_RS16810 -5.0 -3.5 aldose 1-epimerase compare
BBR_RS13705 -5.0 -3.5 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS19395 -5.0 -1.6 hypothetical protein compare
BBR_RS20745 -4.9 -1.9 hypothetical protein compare
BBR_RS10905 -4.9 -3.4 nucleotide exchange factor GrpE compare
BBR_RS21170 -4.9 -9.5 membrane protein insertion efficiency factor YidD compare
BBR_RS10890 -4.9 -3.4 LacI family transcriptional regulator compare
BBR_RS12880 -4.8 -8.1 Crp/Fnr family transcriptional regulator compare
BBR_RS16275 -4.8 -0.9 leucine--tRNA ligase compare
BBR_RS18955 -4.8 -3.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS18735 -4.8 -3.3 hypothetical protein compare
BBR_RS10780 -4.7 -15.8 sucrose phosphorylase compare
BBR_RS16885 -4.7 -8.5 carbohydrate kinase compare
BBR_RS11415 -4.7 -9.6 amino acid ABC transporter substrate-binding protein compare
BBR_RS20555 -4.7 -1.8 hypothetical protein compare
BBR_RS21015 -4.7 -1.3 hypothetical protein compare
BBR_RS17500 -4.7 -3.2 hypothetical protein compare
BBR_RS12820 -4.7 -7.8 hypothetical protein compare
BBR_RS16300 -4.6 -3.2 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS13735 -4.6 -0.9 Lon protease compare
BBR_RS20415 -4.5 -19.1 G5 domain-containing protein compare
BBR_RS16520 -4.5 -5.4 ribosome-associated translation inhibitor RaiA compare
BBR_RS15050 -4.5 -1.7 DUF948 domain-containing protein compare
BBR_RS14190 -4.5 -3.1 transcriptional regulator compare
BBR_RS17510 -4.5 -3.1 VWA domain-containing protein compare
BBR_RS11540 -4.5 -1.9 DUF1727 domain-containing protein compare
BBR_RS14550 -4.5 -3.1 hypothetical protein compare
BBR_RS11245 -4.5 -16.9 MFS transporter compare
BBR_RS14275 -4.5 -0.9 30S ribosomal protein S1 compare
BBR_RS12620 -4.5 -9.1 glycosyltransferase family 1 protein compare
BBR_RS12045 -4.5 -3.1 hypothetical protein compare
BBR_RS20170 -4.4 -19.7 LacI family transcriptional regulator compare
BBR_RS11510 -4.4 -1.2 signal recognition particle-docking protein FtsY compare
BBR_RS17890 -4.4 -13.5 glycosyl hydrolase compare
BBR_RS17515 -4.4 -3.0 hypothetical protein compare
BBR_RS16540 -4.4 -2.9 XRE family transcriptional regulator compare
BBR_RS12900 -4.4 -1.7 DeoR/GlpR transcriptional regulator compare
BBR_RS12555 -4.4 -5.7 protein-tyrosine-phosphatase compare
BBR_RS20375 -4.4 -22.4 glycosyl hydrolase compare
BBR_RS10580 -4.3 -1.6 septation inhibitor protein compare
BBR_RS10255 -4.3 -1.8 chromosomal replication initiator protein DnaA compare
BBR_RS15395 -4.3 -3.0 tRNA (adenine-N1)-methyltransferase compare
BBR_RS13805 -4.3 -1.4 hypothetical protein compare
BBR_RS19465 -4.3 -2.0 ribonuclease E/G compare
BBR_RS20870 -4.2 -1.1 hypothetical protein compare
BBR_RS18635 -4.2 -2.9 PspC domain-containing protein compare
BBR_RS17455 -4.2 -2.9 DNA-binding response regulator compare
BBR_RS17495 -4.2 -2.9 DUF58 domain-containing protein compare
BBR_RS14085 -4.2 -1.1 nicotinate-nucleotide adenylyltransferase compare
BBR_RS10720 -4.1 -2.9 PDZ domain-containing protein compare
BBR_RS20475 -4.1 -17.9 KH domain-containing protein compare
BBR_RS14715 -4.0 -1.1 XRE family transcriptional regulator compare
BBR_RS13905 -4.0 -5.5 ornithine carbamoyltransferase compare
BBR_RS10285 -4.0 -1.3 membrane protein compare
BBR_RS17505 -4.0 -2.8 VWA domain-containing protein compare
BBR_RS13380 -4.0 -2.8 amidophosphoribosyltransferase compare
BBR_RS14220 -4.0 -4.8 phosphomannomutase compare
BBR_RS18575 -4.0 -2.7 hypothetical protein compare
BBR_RS17775 -4.0 -2.8 LacI family DNA-binding transcriptional regulator compare
BBR_RS12235 -4.0 -0.8 hypothetical protein compare
BBR_RS16960 -3.9 -1.5 transcriptional regulator MraZ compare
BBR_RS13070 -3.9 -0.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS12940 -3.9 -2.7 hypothetical protein compare
BBR_RS13525 -3.9 -3.2 CrcB family protein compare
BBR_RS13720 -3.9 -7.9 hypothetical protein compare
BBR_RS11515 -3.9 -14.2 ammonium transporter compare
BBR_RS10555 -3.9 -1.0 DUF3073 domain-containing protein compare
BBR_RS16870 -3.9 -2.7 ROK family protein compare
BBR_RS16650 -3.9 -2.7 ABC transporter substrate-binding protein compare
BBR_RS20690 -3.9 -1.5 hypothetical protein compare
BBR_RS13820 -3.9 -0.7 ATP-binding protein compare
BBR_RS13490 -3.8 -0.7 30S ribosomal protein S7 compare
BBR_RS19220 -3.8 -20.8 glycoside hydrolase family 65 protein compare
BBR_RS13305 -3.8 -2.6 transcriptional repressor compare
BBR_RS10615 -3.8 -3.1 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS12295 -3.8 -0.7 RNA-binding protein compare
BBR_RS12370 -3.8 -0.7 cell division protein compare
BBR_RS10990 -3.7 -2.6 recombination protein RecR compare
BBR_RS13080 -3.7 -7.2 LacI family DNA-binding transcriptional regulator compare
BBR_RS16400 -3.7 -1.2 hypothetical protein compare
BBR_RS19055 -3.7 -1.2 ferredoxin family protein compare
BBR_RS12895 -3.7 -10.9 quinone-dependent dihydroorotate dehydrogenase compare
BBR_RS20370 -3.7 -16.2 hypothetical protein compare
BBR_RS11180 -3.6 -14.3 phosphatase PAP2 family protein compare
BBR_RS17460 -3.6 -6.9 TPM domain-containing protein compare
BBR_RS20795 -3.6 -1.0 cystathionine gamma-lyase compare
BBR_RS13830 -3.6 -0.7 DUF4191 domain-containing protein compare
BBR_RS17155 -3.6 -0.7 cell division protein SepF compare
BBR_RS18185 -3.6 -2.5 hypoxanthine phosphoribosyltransferase compare
BBR_RS10620 -3.5 -2.4 phosphoprotein phosphatase compare
BBR_RS19270 -3.5 -0.7 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS15935 -3.5 -2.4 hypothetical protein compare
BBR_RS18180 -3.5 -2.4 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS15785 -3.5 -1.3 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS13375 -3.5 -2.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS10625 -3.5 -1.3 FHA domain-containing protein compare
BBR_RS11590 -3.5 -0.7 30S ribosomal protein S18 compare
BBR_RS10915 -3.5 -4.8 MerR family DNA-binding transcriptional regulator compare
BBR_RS17490 -3.5 -11.5 MoxR family ATPase compare
BBR_RS20830 -3.5 -1.5 hypothetical protein compare
BBR_RS11640 -3.5 -1.3 hypothetical protein compare
BBR_RS12610 -3.5 -2.4 capsular polysaccharide biosynthesis protein compare
BBR_RS16950 -3.4 -0.9 hypothetical protein compare
BBR_RS11720 -3.4 -2.4 DUF2469 domain-containing protein compare
BBR_RS18745 -3.4 -0.9 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS16220 -3.4 -0.7 DNA cytosine methyltransferase compare
BBR_RS16530 -3.4 -2.3 recombinase RecA compare
BBR_RS15180 -3.4 -6.4 long-chain fatty acid--CoA ligase compare
BBR_RS12720 -3.3 -1.6 hypothetical protein compare
BBR_RS12315 -3.3 -10.2 cation transporter compare
BBR_RS12515 -3.3 -9.7 LacI family transcriptional regulator compare
BBR_RS13445 -3.3 -2.3 phosphoribosylformylglycinamidine synthase compare
BBR_RS20480 -3.3 -0.6 membrane protein compare
BBR_RS15525 -3.2 -6.5 RNase adapter RapZ compare
BBR_RS19905 -3.2 -0.6 methionine--tRNA ligase compare
BBR_RS19655 -3.2 -12.1 hypothetical protein compare
BBR_RS18690 -3.1 -2.2 diacylglycerol kinase compare
BBR_RS13005 -3.1 -13.9 aminopeptidase N compare
BBR_RS12590 -3.1 -1.5 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS16975 -3.1 -1.9 transcriptional repressor NrdR compare
BBR_RS12905 -3.0 -1.3 galactose-1-phosphate uridylyltransferase compare
BBR_RS19755 -3.0 -2.1 glycosyl transferase compare
BBR_RS20885 -3.0 -0.6 hypothetical protein compare
BBR_RS16610 -3.0 -3.2 hypothetical protein compare
BBR_RS16955 -3.0 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS14380 -3.0 -10.3 phosphate acetyltransferase compare
BBR_RS12300 -3.0 -2.2 30S ribosomal protein S16 compare
BBR_RS16555 -3.0 -0.6 DNA translocase FtsK compare
BBR_RS20700 -3.0 -2.0 ribulose phosphate epimerase compare
BBR_RS14280 -2.9 -0.7 dephospho-CoA kinase compare
BBR_RS20715 -2.9 -3.0 hypothetical protein compare
BBR_RS20705 -2.9 -1.1 hypothetical protein compare
BBR_RS20855 -2.9 -2.6 hypothetical protein compare
BBR_RS15660 -2.9 -2.0 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS19640 -2.9 -0.6 phosphoesterase compare
BBR_RS17440 -2.9 -0.8 DUF3027 domain-containing protein compare
BBR_RS20400 -2.9 -17.2 serine/threonine protein kinase compare
BBR_RS14260 -2.9 -0.8 ABC transporter ATP-binding protein compare
BBR_RS16245 -2.9 -1.4 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS16755 -2.9 -4.5 site-specific tyrosine recombinase XerD compare
BBR_RS19345 -2.8 -2.2 tRNA-Val compare
BBR_RS12605 -2.8 -1.5 glycosyltransferase family 2 protein compare
BBR_RS11255 -2.8 -9.2 hypothetical protein compare
BBR_RS15070 -2.8 -1.7 endolytic transglycosylase MltG compare
BBR_RS11425 -2.8 -12.1 ABC transporter permease compare
BBR_RS19160 -2.8 -0.8 phosphate ABC transporter permease subunit PstC compare
BBR_RS13450 -2.8 -1.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS15055 -2.8 -1.3 hypothetical protein compare
BBR_RS10460 -2.8 -10.7 peroxiredoxin compare
BBR_RS19355 -2.8 -0.9 tRNA-Gly compare
BBR_RS15650 -2.7 -1.2 Holliday junction resolvase compare
BBR_RS19450 -2.7 -0.9 GTPase ObgE compare
BBR_RS20770 -2.7 -2.4 30S ribosomal protein S14 compare
BBR_RS18215 -2.7 -6.8 AI-2E family transporter compare
BBR_RS16625 -2.7 -3.8 DUF3710 domain-containing protein compare
BBR_RS10755 -2.7 -1.9 adenylosuccinate synthase compare
BBR_RS19795 -2.7 -12.7 hypothetical protein compare
BBR_RS20465 -2.7 -1.8 chromosome partitioning protein compare
BBR_RS18050 -2.6 -1.4 threonylcarbamoyl-AMP synthase compare
BBR_RS12310 -2.6 -0.9 signal recognition particle protein compare
BBR_RS20980 -2.6 -1.0 hypothetical protein compare
BBR_RS12830 -2.6 -5.4 G5 domain-containing protein compare
BBR_RS11430 -2.6 -11.1 Permease of ABC transporter system compare
BBR_RS16905 -2.6 -2.5 hypothetical protein compare
BBR_RS16605 -2.6 -8.4 hypothetical protein compare
BBR_RS11420 -2.6 -11.6 DUF2318 domain-containing protein compare
BBR_RS11470 -2.5 -0.7 6-phosphogluconolactonase compare
BBR_RS16620 -2.5 -2.8 DUF3159 domain-containing protein compare
BBR_RS15805 -2.5 -1.8 prolipoprotein diacylglyceryl transferase compare
BBR_RS20440 -2.5 -3.9 NUDIX hydrolase compare
BBR_RS18565 -2.5 -0.8 CHAP domain-containing protein compare
BBR_RS14215 -2.5 -1.3 peptidase compare
BBR_RS10570 -2.5 -4.6 hypothetical protein compare
BBR_RS15090 -2.5 -0.7 type II 3-dehydroquinate dehydratase compare
BBR_RS20420 -2.5 -8.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare


Specific Phenotypes

For 11 genes in this experiment

For mouse diet=StandardDiet; sample=FecalPellet in Bifidobacterium breve UCC2003

For mouse diet=StandardDiet; sample=FecalPellet across organisms