Experiment set10IT090 for Marinobacter adhaerens HP15

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Control growth in Pro99_seawater

Group: pro99_seawater
Media: Pro99_seawater + Light intensity (20 μE)
Culturing: Marino_ML2_MIT, bottle_100mL, Aerobic, at 24 (C), shaken=0 rpm
By: Sean Kearney on 1-Mar-20
Media components: 50 uM Sodium phosphate monobasic monohydrate, 800 uM Ammonium chloride, 1.17 uM EDTA (disodium salt), 1.18 uM Ferric chloride, 0.008 uM Zinc sulfate heptahydrate, 0.005 uM Cobalt chloride hexahydrate, 0.09 uM Manganese (II) chloride tetrahydrate, 0.003 uM Sodium Molybdate Dihydrate, 0.01 uM Sodium selenite pentahydrate, 0.01 uM Nickel (II) chloride hexahydrate, 1 X Filtered Seawater

Specific Phenotypes

For 8 genes in this experiment

For pro99_seawater Light intensity in Marinobacter adhaerens HP15

For pro99_seawater Light intensity across organisms

SEED Subsystems

Subsystem #Specific
Cysteine Biosynthesis 1
Entner-Doudoroff Pathway 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Methylglyoxal Metabolism 1
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate 1
Respiratory dehydrogenases 1 1
Type IV pilus 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
ethanol degradation I 2 2 2
acetaldehyde biosynthesis I 1 1 1
ethanol degradation II 3 3 2
pyruvate fermentation to ethanol III 3 3 2
pyruvate fermentation to ethanol I 3 2 2
L-threonine degradation IV 2 2 1
phytol degradation 4 3 2
putrescine degradation V 2 1 1
ethylene glycol degradation 2 1 1
phenylethanol degradation 2 1 1
phenylethylamine degradation I 2 1 1
phenylethylamine degradation II 2 1 1
pyruvate fermentation to ethanol II 2 1 1
putrescine degradation I 2 1 1
ethanolamine utilization 5 5 2
acetylene degradation (anaerobic) 5 4 2
2-hydroxypenta-2,4-dienoate degradation 3 3 1
ethanol degradation IV 3 3 1
hypotaurine degradation 3 2 1
L-valine degradation II 3 2 1
L-leucine degradation III 3 2 1
L-phenylalanine degradation II (anaerobic) 3 2 1
putrescine degradation IV 3 2 1
L-isoleucine degradation II 3 2 1
ethanol degradation III 3 2 1
2-aminoethylphosphonate degradation I 3 1 1
sulfoacetaldehyde degradation IV 3 1 1
L-methionine degradation III 3 1 1
2-deoxy-α-D-ribose 1-phosphate degradation 3 1 1
styrene degradation 3 1 1
2-deoxy-D-ribose degradation I 3 1 1
histamine degradation 3 1 1
noradrenaline and adrenaline degradation 13 4 4
serotonin degradation 7 3 2
fatty acid α-oxidation I (plants) 4 2 1
L-tyrosine degradation III 4 2 1
L-phenylalanine degradation III 4 2 1
D-arabinose degradation II 4 1 1
L-tryptophan degradation X (mammalian, via tryptamine) 4 1 1
salidroside biosynthesis 4 1 1
putrescine degradation III 4 1 1
superpathway of fermentation (Chlamydomonas reinhardtii) 9 5 2
catechol degradation I (meta-cleavage pathway) 5 5 1
octane oxidation 5 5 1
pyruvate fermentation to isobutanol (engineered) 5 4 1
(S)-propane-1,2-diol degradation 5 3 1
sphingosine and sphingosine-1-phosphate metabolism 10 4 2
mitochondrial NADPH production (yeast) 5 2 1
dopamine degradation 5 1 1
phenylethanol biosynthesis 5 1 1
3-methyl-branched fatty acid α-oxidation 6 3 1
superpathway of pyrimidine deoxyribonucleosides degradation 6 2 1
alkane oxidation 6 1 1
triethylamine degradation 6 1 1
superpathway of Clostridium acetobutylicum solventogenic fermentation 13 6 2
3-methylbutanol biosynthesis (engineered) 7 6 1
catechol degradation II (meta-cleavage pathway) 7 6 1
toluene degradation I (aerobic) (via o-cresol) 7 5 1
toluene degradation V (aerobic) (via toluene-cis-diol) 7 5 1
superpathway of glycol metabolism and degradation 7 4 1
ceramide degradation by α-oxidation 7 2 1
superpathway of purine deoxyribonucleosides degradation 7 1 1
limonene degradation IV (anaerobic) 7 1 1
mixed acid fermentation 16 11 2
superpathway of ornithine degradation 8 5 1
superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) 8 4 1
3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation 8 3 1
p-cumate degradation 8 3 1
ceramide and sphingolipid recycling and degradation (yeast) 16 4 2
butanol and isobutanol biosynthesis (engineered) 8 2 1
aromatic biogenic amine degradation (bacteria) 8 1 1
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation 17 8 2
heterolactic fermentation 18 14 2
Entner-Doudoroff pathway II (non-phosphorylative) 9 5 1
L-phenylalanine degradation IV (mammalian, via side chain) 9 3 1
hexitol fermentation to lactate, formate, ethanol and acetate 19 15 2
meta cleavage pathway of aromatic compounds 10 9 1
superpathway of phenylethylamine degradation 11 10 1
superpathway of N-acetylneuraminate degradation 22 13 2
superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation 11 5 1
p-cymene degradation 11 3 1
L-tryptophan degradation XII (Geobacillus) 12 6 1
L-tryptophan degradation IX 12 6 1
naphthalene degradation to acetyl-CoA 12 5 1
toluene degradation IV (aerobic) (via catechol) 13 9 1
superpathway of L-arginine and L-ornithine degradation 13 7 1
L-tryptophan degradation V (side chain pathway) 13 1 1
superpathway of L-threonine metabolism 18 12 1
mandelate degradation to acetyl-CoA 18 9 1
superpathway of anaerobic sucrose degradation 19 14 1
anaerobic aromatic compound degradation (Thauera aromatica) 27 4 1
superpathway of aerobic toluene degradation 30 13 1
superpathway of aromatic compound degradation via 3-oxoadipate 35 10 1
superpathway of aromatic compound degradation via 2-hydroxypentadienoate 42 13 1
superpathway of pentose and pentitol degradation 42 4 1