Experiment set10IT089 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS09660 -5.1 -3.5 DNA translocase FtsK compare
BWI76_RS23240 -5.0 -3.4 exonuclease V subunit gamma compare
BWI76_RS15825 -4.6 -4.5 hypothetical protein compare
BWI76_RS01210 -4.5 -6.8 tyrosine recombinase XerC compare
BWI76_RS09645 -4.3 -3.3 thioredoxin-disulfide reductase compare
BWI76_RS23230 -3.7 -4.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS25600 -3.6 -1.9 tRNA-Thr compare
BWI76_RS08535 -3.6 -3.8 translocation protein TolB compare
BWI76_RS09970 -3.4 -5.9 porin OmpA compare
BWI76_RS02530 -3.3 -3.2 tRNA dimethylallyltransferase compare
BWI76_RS02410 -3.2 -2.2 EF-P beta-lysylation protein EpmB compare
BWI76_RS09635 -2.6 -3.9 amino acid ABC transporter ATP-binding protein compare
BWI76_RS00345 -2.5 -4.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS23265 -2.3 -5.0 hypothetical protein compare
BWI76_RS05200 -2.1 -3.1 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS20650 -2.1 -1.4 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS26620 -2.1 -1.9 Fe-S biogenesis protein NfuA compare
BWI76_RS25960 -2.1 -5.4 NUDIX hydrolase compare
BWI76_RS10990 -2.0 -4.5 dihydroorotase compare
BWI76_RS04715 -1.9 -2.3 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS26570 -1.8 -3.1 anion permease compare
BWI76_RS01200 -1.8 -2.7 diaminopimelate epimerase compare
BWI76_RS26085 -1.8 -3.1 3-dehydroquinate synthase compare
BWI76_RS15115 -1.8 -7.0 MFS transporter compare
BWI76_RS11965 -1.8 -5.8 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04305 -1.8 -1.6 molecular chaperone DnaJ compare
BWI76_RS00180 -1.8 -2.3 F0F1 ATP synthase subunit epsilon compare
BWI76_RS08385 -1.7 -3.1 citrate (Si)-synthase compare
BWI76_RS16275 -1.7 -3.3 fumarate hydratase FumA compare
BWI76_RS15660 -1.6 -2.3 hypothetical protein compare
BWI76_RS16965 -1.6 -3.0 murein lipoprotein compare
BWI76_RS05015 -1.6 -3.5 transcriptional regulator compare
BWI76_RS15835 -1.6 -1.0 hypothetical protein compare
BWI76_RS01190 -1.6 -2.4 iron donor protein CyaY compare
BWI76_RS00355 -1.5 -2.9 DNA polymerase I compare
BWI76_RS08525 -1.5 -2.5 colicin transporter compare
BWI76_RS17975 -1.5 -4.9 tail-specific protease compare
BWI76_RS15110 -1.5 -11.2 putative excinuclease ABC subunit A compare
BWI76_RS01325 -1.5 -2.4 twin-arginine translocase subunit TatB compare
BWI76_RS24275 -1.5 -3.3 biopolymer transport protein ExbD compare
BWI76_RS09190 -1.5 -4.8 hypothetical protein compare
BWI76_RS00600 -1.4 -6.2 LacI family transcriptional regulator compare
BWI76_RS01220 -1.4 -7.0 DNA-dependent helicase II compare
BWI76_RS15830 -1.4 -3.2 hypothetical protein compare
BWI76_RS24585 -1.4 -2.6 glycerol dehydrogenase compare
BWI76_RS08395 -1.4 -2.7 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS26175 -1.4 -4.9 DeoR/GlpR family transcriptional regulator compare
BWI76_RS00240 -1.4 -2.2 FMN-binding protein MioC compare
BWI76_RS15605 -1.4 -2.4 hypothetical protein compare
BWI76_RS27430 -1.4 -1.8 (p)ppGpp synthetase compare
BWI76_RS27875 -1.4 -1.8 membrane protein compare
BWI76_RS04510 -1.4 -1.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS23830 -1.4 -6.1 hypothetical protein compare
BWI76_RS18165 -1.4 -2.1 NUDIX pyrophosphatase compare
BWI76_RS06535 -1.3 -5.1 endopeptidase La compare
BWI76_RS06830 -1.3 -4.2 recombination protein RecR compare
BWI76_RS27440 -1.3 -3.9 DNA helicase RecG compare
BWI76_RS21370 -1.3 -2.5 ATP-dependent RNA helicase SrmB compare
BWI76_RS25065 -1.3 -2.9 polyribonucleotide nucleotidyltransferase compare
BWI76_RS25335 -1.3 -3.9 stringent starvation protein A compare
BWI76_RS20135 -1.3 -3.8 NADH-quinone oxidoreductase subunit M compare
BWI76_RS20190 -1.3 -2.9 NADH-quinone oxidoreductase subunit A compare
BWI76_RS20145 -1.3 -2.2 NADH-quinone oxidoreductase subunit K compare
BWI76_RS04470 -1.2 -7.3 carbamoyl phosphate synthase large subunit compare
BWI76_RS09910 -1.2 -10.0 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS08425 -1.2 -4.5 succinyl-CoA ligase subunit beta compare
BWI76_RS17980 -1.2 -4.8 RNA chaperone ProQ compare
BWI76_RS23480 -1.2 -8.0 EAL domain-containing protein compare
BWI76_RS24280 -1.2 -4.6 biopolymer transporter ExbB compare
BWI76_RS01350 -1.2 -1.4 NAD(P)H-flavin reductase compare
BWI76_RS08380 -1.2 -1.3 endonuclease VIII compare
BWI76_RS17190 -1.2 -1.8 TonB system transport protein TonB compare
BWI76_RS01185 -1.2 -1.7 adenylate cyclase compare
BWI76_RS08530 -1.2 -3.2 protein TolA compare
BWI76_RS16485 -1.2 -2.3 ribonuclease T compare
BWI76_RS23885 -1.2 -1.9 2-octaprenylphenol hydroxylase compare
BWI76_RS06730 -1.2 -3.3 lac repressor compare
BWI76_RS19035 -1.1 -5.4 dTDP-rhamnosyl transferase compare
BWI76_RS09640 -1.1 -3.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS06490 -1.1 -5.0 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS20130 -1.1 -5.6 NADH-quinone oxidoreductase subunit N compare
BWI76_RS20355 -1.1 -3.0 colicin V production protein compare
BWI76_RS16355 -1.1 -1.9 electron transport complex subunit A compare
BWI76_RS25425 -1.1 -1.1 arginine repressor compare
BWI76_RS08520 -1.1 -1.7 colicin transporter TolQ compare
BWI76_RS20140 -1.1 -3.3 NADH-quinone oxidoreductase subunit L compare
BWI76_RS10700 -1.1 -3.8 XRE family transcriptional regulator compare
BWI76_RS21450 -1.1 -2.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS05450 -1.1 -1.8 ribonuclease HI compare
BWI76_RS08210 -1.0 -1.9 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS02995 -1.0 -5.7 aspartate carbamoyltransferase compare
BWI76_RS15850 -1.0 -2.9 DUF1317 domain-containing protein compare
BWI76_RS27390 -1.0 -3.5 ribonuclease PH compare
BWI76_RS09030 -1.0 -4.0 transpeptidase compare
BWI76_RS06525 -1.0 -4.6 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS08205 -1.0 -4.5 DNA-binding transcriptional dual regulator NagC compare
BWI76_RS06485 -1.0 -2.6 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS07705 -1.0 -2.4 enterochelin esterase compare
BWI76_RS08430 -1.0 -3.0 succinate--CoA ligase subunit alpha compare
BWI76_RS27165 -1.0 -3.3 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS15705 -1.0 -3.9 putative holin protein compare
BWI76_RS20170 -1.0 -2.9 NADH-quinone oxidoreductase subunit F compare
BWI76_RS13105 -1.0 -3.3 phenylacetate-CoA oxygenase subunit PaaJ compare
BWI76_RS07780 -1.0 -1.5 hypothetical protein compare
BWI76_RS08405 -1.0 -1.8 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS04465 -1.0 -3.2 carbamoyl-phosphate synthase small subunit compare
BWI76_RS02580 -1.0 -1.3 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS17335 -1.0 -6.2 nitrate reductase subunit alpha compare
BWI76_RS25060 -1.0 -2.9 lipoprotein NlpI compare
BWI76_RS09515 -1.0 -2.8 arginine ABC transporter substrate-binding protein compare
BWI76_RS20490 -1.0 -2.9 hypothetical protein compare
BWI76_RS16000 -1.0 -1.7 multidrug transporter subunit MdtI compare
BWI76_RS15840 -0.9 -3.4 prophage protein compare
BWI76_RS27075 -0.9 -3.9 IclR family transcriptional regulator compare
BWI76_RS21140 -0.9 -1.4 molecular chaperone HscA compare
BWI76_RS20995 -0.9 -3.9 RNA degradosome polyphosphate kinase compare
BWI76_RS21460 -0.9 -1.6 translation inhibitor protein RaiA compare
BWI76_RS20180 -0.9 -4.6 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS27860 -0.9 -5.2 D-serine dehydratase compare
BWI76_RS26095 -0.9 -0.8 shikimate kinase compare
BWI76_RS12295 -0.9 -2.6 hypothetical protein compare
BWI76_RS17340 -0.9 -4.1 NarK family nitrate/nitrite MFS transporter compare
BWI76_RS23915 -0.9 -1.3 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS26775 -0.9 -3.1 endo-1,4-D-glucanase compare
BWI76_RS17720 -0.9 -1.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS01135 -0.9 -3.0 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS15565 -0.9 -2.2 hypothetical protein compare
BWI76_RS06495 -0.9 -5.1 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS20160 -0.9 -2.7 NADH-quinone oxidoreductase subunit H compare
BWI76_RS15640 -0.9 -4.2 hypothetical protein compare
BWI76_RS19010 -0.9 -2.5 polysaccharide pyruvyl transferase yvff compare
BWI76_RS13595 -0.9 -3.8 transcriptional regulator compare
BWI76_RS15600 -0.9 -2.5 hypothetical protein compare
BWI76_RS17735 -0.8 -2.2 D-amino acid dehydrogenase small subunit compare
BWI76_RS20360 -0.8 -1.2 cell division protein DedD compare
BWI76_RS26075 -0.8 -2.8 DNA adenine methylase compare
BWI76_RS22870 -0.8 -4.4 LOG family protein compare
BWI76_RS21740 -0.8 -2.8 transcriptional regulator, LysR family protein compare
BWI76_RS23360 -0.8 -1.9 diaminopimelate decarboxylase compare
BWI76_RS10305 -0.8 -5.2 transposase compare
BWI76_RS25905 -0.8 -2.5 hypothetical protein compare
BWI76_RS04530 -0.8 -1.6 peptidylprolyl isomerase SurA compare
BWI76_RS23970 -0.8 -1.4 mechanosensitive ion channel protein MscS compare
BWI76_RS26080 -0.8 -2.4 cell division protein DamX compare
BWI76_RS17805 -0.8 -1.3 membrane protein compare
BWI76_RS21580 -0.8 -1.6 SsrA-binding protein compare
BWI76_RS02330 -0.8 -5.4 aspartate ammonia-lyase compare
BWI76_RS00010 -0.8 -4.3 DNA replication and repair protein RecF compare
BWI76_RS01870 -0.8 -3.0 diacylglycerol kinase compare
BWI76_RS21340 -0.8 -1.4 SoxR reducing system protein RseC compare
BWI76_RS24605 -0.8 -4.8 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS19055 -0.8 -5.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BWI76_RS08390 -0.8 -2.8 hypothetical protein compare
BWI76_RS11940 -0.8 -3.4 aconitate hydratase 1 compare
BWI76_RS12420 -0.8 -1.2 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS23820 -0.8 -2.3 flavodoxin FldB compare
BWI76_RS15635 -0.8 -1.9 hypothetical protein compare
BWI76_RS04160 -0.8 -3.5 phosphoserine phosphatase compare
BWI76_RS15950 -0.8 -1.5 dethiobiotin synthase compare
BWI76_RS20165 -0.8 -2.8 NADH-quinone oxidoreductase subunit G compare
BWI76_RS06475 -0.8 -1.3 protoheme IX farnesyltransferase compare
BWI76_RS01615 -0.8 -4.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS07730 -0.8 -1.3 iron-enterobactin transporter membrane protein compare
BWI76_RS09080 -0.8 -1.5 molybdopterin-synthase adenylyltransferase MoeB compare
BWI76_RS02575 -0.8 -4.3 exoribonuclease R compare
BWI76_RS09960 -0.8 -1.2 Lon protease compare
BWI76_RS11110 -0.7 -2.4 cell division protein YceG compare
BWI76_RS20050 -0.7 -1.4 hypothetical protein compare
BWI76_RS12280 -0.7 -2.9 hypothetical protein compare
BWI76_RS08645 -0.7 -2.0 molybdate ABC transporter substrate-binding protein compare
BWI76_RS22240 -0.7 -4.6 transcriptional regulator compare
BWI76_RS15630 -0.7 -3.9 hypothetical protein compare
BWI76_RS02725 -0.7 -1.1 HxlR family transcriptional regulator compare
BWI76_RS03225 -0.7 -4.3 transcriptional regulator compare
BWI76_RS15645 -0.7 -3.0 gp6 compare
BWI76_RS04955 -0.7 -1.7 hypoxanthine phosphoribosyltransferase compare
BWI76_RS15700 -0.7 -2.5 hypothetical protein compare
BWI76_RS18770 -0.7 -1.2 DNA gyrase inhibitor compare
BWI76_RS16360 -0.7 -1.1 electron transport complex subunit RsxB compare
BWI76_RS01170 -0.7 -2.4 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS23875 -0.7 -2.3 glycine cleavage system protein H compare
BWI76_RS04705 -0.7 -3.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS25870 -0.7 -1.3 elongation factor Tu compare
BWI76_RS00025 -0.7 -0.8 hypothetical protein compare
BWI76_RS05425 -0.7 -2.2 EEP domain-containing protein compare
BWI76_RS15670 -0.7 -2.6 hypothetical protein compare
BWI76_RS00295 -0.7 -3.9 transcriptional regulator RbsR compare
BWI76_RS26390 -0.7 -3.3 cell division protein FtsX compare
BWI76_RS27385 -0.7 -3.5 orotate phosphoribosyltransferase compare
BWI76_RS08725 -0.7 -2.9 Formiminoglutamase (EC 3.5.3.8) (from data) compare
BWI76_RS26395 -0.7 -2.4 cell division protein FtsE compare
BWI76_RS20150 -0.7 -1.5 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS16075 -0.7 -1.4 oxidoreductase compare
BWI76_RS17345 -0.7 -3.3 nitrate/nitrite two-component system sensor histidine kinase NarX compare
BWI76_RS16230 -0.7 -1.2 dihydromonapterin reductase compare
BWI76_RS02745 -0.7 -1.1 hypothetical protein compare
BWI76_RS08835 -0.7 -3.2 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS20350 -0.7 -3.0 amidophosphoribosyltransferase compare
BWI76_RS21350 -0.7 -2.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS03080 -0.7 -2.4 (Fe-S)-cluster assembly protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms