Experiment set10IT089 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS06340 +1.5 2.4 hypothetical protein compare
BWI76_RS16490 +1.4 5.0 glutaredoxin compare
BWI76_RS21075 +1.4 2.2 membrane protein compare
BWI76_RS19330 +1.2 1.7 HAD family hydrolase compare
BWI76_RS05885 +1.0 3.0 anion permease compare
BWI76_RS25300 +1.0 3.4 hybrid sensor histidine kinase/response regulator compare
BWI76_RS19840 +1.0 1.8 hypothetical protein compare
BWI76_RS14835 +1.0 1.8 hypothetical protein compare
BWI76_RS17155 +0.9 2.5 hypothetical protein compare
BWI76_RS01995 +0.9 1.9 AraC family transcriptional regulator compare
BWI76_RS19355 +0.9 4.4 LacI family transcriptional regulator compare
BWI76_RS03815 +0.9 2.2 hypothetical protein compare
BWI76_RS13240 +0.8 1.7 hypothetical protein compare
BWI76_RS25285 +0.8 1.2 HPr family phosphocarrier protein compare
BWI76_RS07435 +0.8 4.5 LacI family transcriptional regulator compare
BWI76_RS19460 +0.8 2.4 lipoprotein compare
BWI76_RS07710 +0.8 2.4 invasin-like protein compare
BWI76_RS22955 +0.8 3.3 transcriptional regulator GcvA compare
BWI76_RS05465 +0.8 1.1 amidohydrolase compare
BWI76_RS09530 +0.7 1.0 hypothetical protein compare
BWI76_RS01935 +0.7 2.2 thiamin phosphate synthase compare
BWI76_RS26875 +0.7 2.1 dipeptide ABC transporter permease DppC compare
BWI76_RS13545 +0.7 1.4 N-acetyltransferase compare
BWI76_RS24110 +0.7 2.1 YggU family protein compare
BWI76_RS12520 +0.7 2.0 hypothetical protein compare
BWI76_RS09625 +0.7 1.7 hypothetical protein compare
BWI76_RS27425 +0.7 0.9 DNA-directed RNA polymerase subunit omega compare
BWI76_RS16995 +0.7 5.0 Fe-S cluster assembly protein SufB compare
BWI76_RS07950 +0.7 3.9 universal stress protein G compare
BWI76_RS02690 +0.7 2.1 hypothetical protein compare
BWI76_RS25205 +0.7 2.5 hypothetical protein compare
BWI76_RS00640 +0.7 2.0 L-rhamnose mutarotase compare
BWI76_RS11735 +0.7 2.7 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS16950 +0.7 1.7 TetR family transcriptional regulator compare
BWI76_RS22435 +0.7 3.3 iron ABC transporter permease AfeC compare
BWI76_RS08975 +0.7 1.6 amino acid ABC transporter substrate-binding protein compare
BWI76_RS19645 +0.7 4.9 galactose ABC transporter substrate-binding protein compare
BWI76_RS05880 +0.7 1.0 AraC-type DNA-binding domain-containing protein compare
BWI76_RS24385 +0.6 3.3 phosphodiesterase compare
BWI76_RS24390 +0.6 1.5 hypothetical protein compare
BWI76_RS16815 +0.6 1.4 periplasmic binding protein compare
BWI76_RS02820 +0.6 3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BWI76_RS02420 +0.6 3.3 entericidin EcnAB compare
BWI76_RS09275 +0.6 2.5 major capsid protein compare
BWI76_RS13245 +0.6 2.6 DNA-damage-inducible protein I compare
BWI76_RS14240 +0.6 1.7 thiol reductase thioredoxin compare
BWI76_RS11435 +0.6 1.2 hypothetical protein compare
BWI76_RS18755 +0.6 1.1 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS01590 +0.6 2.6 hypothetical protein compare
BWI76_RS21375 +0.6 1.3 autonomous glycyl radical cofactor GrcA compare
BWI76_RS05570 +0.6 1.1 hypothetical protein compare
BWI76_RS09150 +0.6 2.7 DNA-binding transcriptional repressor DeoR compare
BWI76_RS23670 +0.6 2.8 alkaline phosphatase compare
BWI76_RS20230 +0.6 1.3 hypothetical protein compare
BWI76_RS13050 +0.6 1.7 transcriptional regulator compare
BWI76_RS19575 +0.6 1.6 maleylacetoacetate isomerase compare
BWI76_RS09940 +0.6 1.5 paraquat-inducible protein B compare
BWI76_RS20805 +0.6 2.0 phosphate acetyltransferase compare
BWI76_RS07475 +0.6 0.8 DNA-binding transcriptional regulator RamA compare
BWI76_RS17855 +0.6 3.0 alginate lyase compare
BWI76_RS19525 +0.6 2.7 D-alanyl-D-alanine endopeptidase compare
BWI76_RS08340 +0.6 2.7 MFS transporter compare
BWI76_RS16040 +0.6 2.4 biotin-independent malonate decarboxylase subunit gamma compare
BWI76_RS18870 +0.6 1.0 protein NifZ compare
BWI76_RS12550 +0.6 0.9 hypothetical protein compare
BWI76_RS11255 +0.5 1.1 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS15280 +0.5 1.8 sugar transporter compare
BWI76_RS01290 +0.5 1.8 putative dienelactone hydrolase compare
BWI76_RS08625 +0.5 2.7 UDP-glucose 4-epimerase GalE compare
BWI76_RS08910 +0.5 2.2 transketolase domain-containing protein compare
BWI76_RS05135 +0.5 2.4 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS00440 +0.5 1.2 CopG family transcriptional regulator compare
BWI76_RS13155 +0.5 2.5 hypothetical protein compare
BWI76_RS16015 +0.5 2.1 pheromone autoinducer 2 transporter compare
BWI76_RS00060 +0.5 1.2 N-acetylneuraminate lyase compare
BWI76_RS15030 +0.5 1.3 ABC transporter compare
BWI76_RS07725 +0.5 0.7 iron-enterobactin transporter permease compare
BWI76_RS18240 +0.5 1.6 L-arabinose ABC transporter permease AraH compare
BWI76_RS16900 +0.5 1.9 4-hydroxy-2-oxovalerate aldolase compare
BWI76_RS14735 +0.5 2.1 type 11 methyltransferase compare
BWI76_RS16095 +0.5 2.3 thiamine biosynthesis protein ApbE compare
BWI76_RS14980 +0.5 0.7 hypothetical protein compare
BWI76_RS11900 +0.5 1.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS14105 +0.5 2.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit E compare
BWI76_RS26890 +0.5 0.7 hypothetical protein compare
BWI76_RS00765 +0.5 2.6 DNA-binding transcriptional regulator CytR compare
BWI76_RS20395 +0.5 2.6 flagella biosynthesis regulator compare
BWI76_RS06735 +0.5 1.4 50S ribosomal protein L31 compare
BWI76_RS21190 +0.5 3.4 stationary phase inducible protein CsiE compare
BWI76_RS05870 +0.5 2.1 ABC transporter compare
BWI76_RS06530 +0.5 2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS16990 +0.5 2.6 ABC transporter ATP-binding protein compare
BWI76_RS01335 +0.5 2.3 DNase TatD compare
BWI76_RS10825 +0.5 2.6 deferrochelatase/peroxidase EfeB compare
BWI76_RS14040 +0.5 0.9 thiaminase compare
BWI76_RS07765 +0.5 1.6 thioesterase compare
BWI76_RS00940 +0.5 3.1 transcriptional regulator HdfR compare
BWI76_RS26330 +0.5 1.4 ABC transporter ATP-binding protein compare
BWI76_RS26870 +0.5 2.0 dipeptide ABC transporter ATP-binding protein compare
BWI76_RS24180 +0.5 1.2 hypothetical protein compare
BWI76_RS09305 +0.5 0.8 hypothetical protein compare
BWI76_RS18270 +0.5 1.7 hypothetical protein compare
BWI76_RS09065 +0.5 1.4 sugar phosphatase SupH compare
BWI76_RS09390 +0.5 1.5 phage tail protein compare
BWI76_RS16675 +0.5 1.1 ABC transporter compare
BWI76_RS17675 +0.5 1.3 hypothetical protein compare
BWI76_RS04060 +0.5 1.4 hypothetical protein compare
BWI76_RS19500 +0.5 2.6 osmoprotectant uptake system permease compare
BWI76_RS07820 +0.5 1.0 S-methyl-5-thioribose kinase compare
BWI76_RS26130 +0.5 1.6 ADP compounds hydrolase NudE compare
BWI76_RS11600 +0.5 1.2 selenide, water dikinase SelD compare
BWI76_RS16690 +0.5 2.1 peptide ABC transporter permease compare
BWI76_RS10680 +0.5 2.1 tartrate dehydrogenase compare
BWI76_RS12670 +0.5 1.4 DNA polymerase V subunit UmuD compare
BWI76_RS15790 +0.5 2.1 replication protein compare
BWI76_RS05655 +0.5 1.4 hypothetical protein compare
BWI76_RS19640 +0.5 4.2 galactose/methyl galactoside ABC transporter ATP-binding protein MglA compare
BWI76_RS12580 +0.5 2.0 oxidoreductase compare
BWI76_RS26750 +0.5 1.9 PfkB domain-containing protein compare
BWI76_RS16335 +0.5 1.2 division septum protein Blr compare
BWI76_RS04595 +0.5 1.7 DNA-binding transcriptional regulator AraC compare
BWI76_RS17715 +0.5 1.5 murein transglycosylase compare
BWI76_RS19690 +0.5 1.4 LysR family transcriptional regulator compare
BWI76_RS04965 +0.5 1.9 ABC transporter ATP-binding protein compare
BWI76_RS18355 +0.5 2.2 amino acid ABC transporter permease compare
BWI76_RS20030 +0.5 2.2 DNA-binding response regulator compare
BWI76_RS18080 +0.5 2.0 protein YebE compare
BWI76_RS01855 +0.5 1.8 chorismate lyase compare
BWI76_RS02200 +0.4 1.3 phosphonate C-P lyase system protein PhnL compare
BWI76_RS09455 +0.4 1.2 YbjN domain-containing protein compare
BWI76_RS26660 +0.4 2.2 transcription elongation factor GreB compare
BWI76_RS13150 +0.4 1.5 carnitine operon protein CaiE compare
BWI76_RS18065 +0.4 1.2 DNA polymerase III subunit theta compare
BWI76_RS19710 +0.4 1.1 NupC/NupG family nucleoside CNT transporter compare
BWI76_RS01565 +0.4 1.0 NADH pyrophosphatase compare
BWI76_RS17000 +0.4 1.9 Fe-S cluster assembly scaffold SufA compare
BWI76_RS23520 +0.4 1.0 hypothetical protein compare
BWI76_RS03700 +0.4 2.6 hypothetical protein compare
BWI76_RS04970 +0.4 1.9 ABC transporter permease compare
BWI76_RS07635 +0.4 2.3 Hok/gef cell toxic protein compare
BWI76_RS10530 +0.4 1.2 GntR family transcriptional regulator with compare
BWI76_RS11835 +0.4 0.8 putative regulatory protein MarR compare
BWI76_RS19775 +0.4 1.2 phage resistance protein compare
BWI76_RS11260 +0.4 1.3 hypothetical protein compare
BWI76_RS22300 +0.4 1.4 hydrogenase 3 maturation endopeptidase HyCI compare
BWI76_RS22375 +0.4 1.6 pectin acetylesterase compare
BWI76_RS04560 +0.4 1.8 holo-ACP synthase CitX compare
BWI76_RS16195 +0.4 1.0 hypothetical protein compare
BWI76_RS11665 +0.4 2.0 exodeoxyribonuclease III compare
BWI76_RS19695 +0.4 1.4 membrane protein compare
BWI76_RS08805 +0.4 1.5 gluconeogenesis factor compare
BWI76_RS13890 +0.4 2.1 LysR family transcriptional regulator compare
BWI76_RS05925 +0.4 2.3 hypothetical protein compare
BWI76_RS06800 +0.4 0.8 DUF2496 domain-containing protein compare
BWI76_RS08855 +0.4 1.8 endonuclease/exonuclease/phosphatase compare
BWI76_RS08765 +0.4 1.3 8-amino-7-oxononanoate synthase compare
BWI76_RS17970 +0.4 0.8 zinc metalloprotease HtpX compare
BWI76_RS11335 +0.4 0.8 tautomerase compare
BWI76_RS02585 +0.4 2.3 hypothetical protein compare
BWI76_RS15930 +0.4 1.2 dimethylsulfoxide reductase, chain B compare
BWI76_RS05945 +0.4 1.5 amino acid ABC transporter permease compare
BWI76_RS15340 +0.4 1.9 urea ABC transporter substrate-binding protein compare
BWI76_RS02880 +0.4 2.3 membrane protein compare
BWI76_RS14680 +0.4 1.2 SefF compare
BWI76_RS13685 +0.4 1.0 IclR family transcriptional regulator compare
BWI76_RS12600 +0.4 1.6 MFS transporter compare
BWI76_RS06180 +0.4 1.7 hypothetical protein compare
BWI76_RS14110 +0.4 1.5 C-lysozyme inhibitor compare
BWI76_RS12795 +0.4 1.7 DedA family protein compare
BWI76_RS18780 +0.4 1.0 D-alanyl-D-alanine carboxypeptidase compare
BWI76_RS19635 +0.4 3.3 galactoside ABC transporter permease MglC compare
BWI76_RS27780 +0.4 1.3 hypothetical protein compare
BWI76_RS24350 +0.4 1.6 quinol monooxygenase compare
BWI76_RS24720 +0.4 1.5 hypothetical protein compare
BWI76_RS15095 +0.4 1.3 isochorismatase compare
BWI76_RS11020 +0.4 1.3 oxidoreductase family, NAD-binding protein compare
BWI76_RS07540 +0.4 1.4 dipeptide ABC transporter ATP-binding protein DppD compare
BWI76_RS19480 +0.4 1.4 transcriptional regulator compare
BWI76_RS14610 +0.4 1.8 putative hydrolase compare
BWI76_RS24870 +0.4 2.8 phosphocarrier, HPr family protein compare
BWI76_RS02450 +0.4 2.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
BWI76_RS16805 +0.4 0.9 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS08580 +0.4 1.3 quinolinate synthetase compare
BWI76_RS22845 +0.4 1.9 flavodoxin compare
BWI76_RS17640 +0.4 2.2 luciferase-like protein compare
BWI76_RS13160 +0.4 1.1 azoreductase compare
BWI76_RS12100 +0.4 2.3 replication protein P compare
BWI76_RS01595 +0.4 2.2 zinc resistance protein compare
BWI76_RS09050 +0.4 1.5 MFS transporter compare
BWI76_RS23055 +0.4 1.2 cobalamin biosynthesis protein CbiG compare
BWI76_RS23150 +0.4 1.6 propanediol utilization phosphotransacylase compare
BWI76_RS09100 +0.4 2.3 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS07640 +0.4 0.4 short chain dehydrogenase compare
BWI76_RS16685 +0.4 1.1 peptide ABC transporter permease compare
BWI76_RS20285 +0.4 2.2 glutathione S-transferase compare
BWI76_RS04240 +0.4 0.6 thr operon leader peptide compare
BWI76_RS02855 +0.4 0.9 cytochrome B562 compare
BWI76_RS05205 +0.4 1.3 type I methionyl aminopeptidase compare
BWI76_RS19560 +0.4 1.6 beta-1,4-xylanase compare
BWI76_RS04615 +0.4 1.5 thiamine transporter substrate binding subunit compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms