Experiment set10IT088 for Shewanella oneidensis MR-1

Compare to:

minimal media, aerobic, 1G configuration

200 most detrimental genes:

  gene name fitness t score description  
SO3189 +3.2 24.8 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO3172 +2.7 8.8 galactosyl transferase (NCBI ptt file) compare
SO2431 ruvC +2.2 1.1 crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) compare
SO4228 +1.6 2.4 conserved hypothetical protein TIGR00242 (NCBI ptt file) compare
SOA0130 +1.4 3.1 ISSod4, transposase (NCBI ptt file) compare
SO3251 cheR-2 +1.4 8.6 chemotaxis protein methyltransferase CheR (NCBI ptt file) compare
SO2658 +1.3 1.6 hypothetical protein (NCBI ptt file) compare
SO3222 fliL +1.3 5.7 flagellar protein FliL (NCBI ptt file) compare
SO0132 +1.2 8.7 flagellar protein FliL, putative (NCBI ptt file) compare
SO3743 +1.2 7.8 transcriptional regulator, TetR family (NCBI ptt file) compare
SO0775 +1.1 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO3841 +1.0 2.2 hypothetical protein (NCBI ptt file) compare
SO3853 +1.0 1.9 hypothetical protein (NCBI ptt file) compare
SO3092 +1.0 1.6 hypothetical protein (NCBI ptt file) compare
SO4711 +1.0 7.6 HD domain protein (NCBI ptt file) compare
SO2175 +0.9 4.2 conserved hypothetical protein (NCBI ptt file) compare
SO3084 +0.9 8.8 sensory box protein (NCBI ptt file) compare
SO4742 +0.9 3.8 transcriptional regulator, DeoR family (NCBI ptt file) compare
SO3199 +0.9 2.7 FlhB domain protein (NCBI ptt file) compare
SO1946 phoP +0.9 3.6 transcriptional regulatory protein PhoP (NCBI ptt file) compare
SO0229 tufA +0.8 0.9 translation elongation factor Tu (NCBI ptt file) compare
SO1945 phoQ +0.8 4.0 sensor protein PhoQ (NCBI ptt file) compare
SO3181 +0.8 1.4 polysaccharide biosynthesis domain protein (NCBI ptt file) compare
SO3677 +0.8 2.8 hypothetical protein (NCBI ptt file) compare
SO_t012 tRNA-Gly-1 +0.8 1.9 tRNA-Gly (RefSeq) compare
SO3212 flhF +0.8 3.1 flagellar biosynthetic protein FlhF (NCBI ptt file) compare
SO_2824 +0.8 2.3 no description compare
SO_2786 +0.8 2.4 no description compare
SO1298.3 +0.8 1.8 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO2430 ruvA +0.8 0.9 Holliday junction DNA helicase RuvA (NCBI ptt file) compare
SO3033 +0.8 3.7 ferric alcaligin siderophore receptor (NCBI ptt file) compare
SO0448 +0.7 2.6 hypothetical protein (NCBI ptt file) compare
SO1686 +0.7 4.5 prolyl oligopeptidase family protein (NCBI ptt file) compare
SO2179 +0.7 2.7 hypothetical protein (NCBI ptt file) compare
SO3066 +0.7 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO3192 +0.7 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO1256 +0.7 2.1 hypothetical 4-hydroxybenzoyl-CoA thioesterase (NCBI ptt file) compare
SO1050 +0.7 1.0 hypothetical protein (NCBI ptt file) compare
SO3571 +0.7 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO2063 +0.7 2.1 hypothetical protein (NCBI ptt file) compare
SO2773 +0.7 1.4 hypothetical protein (NCBI ptt file) compare
SO3765 +0.7 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO_t008 tRNA-Thr-1 +0.7 0.6 tRNA-Thr (RefSeq) compare
SO4227 +0.7 1.0 conserved hypothetical protein TIGR00006 (NCBI ptt file) compare
SO0581 +0.7 2.0 hypothetical protein (NCBI ptt file) compare
SO3190 +0.7 4.8 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO3965 ptsO +0.7 2.9 phosphocarrier protein NPR (NCBI ptt file) compare
SO4073 +0.7 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO4229 +0.6 2.0 hypothetical protein (NCBI ptt file) compare
SO3140.1 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
SO3280 +0.6 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO2080 +0.6 2.3 hypothetical protein (NCBI ptt file) compare
SO1742 +0.6 1.6 hypothetical 3-oxoacyl-acyl carrier protein synthase III (NCBI ptt file) compare
SO2615 pabC +0.6 1.5 4-amino-4-deoxychorismate lyase (NCBI ptt file) compare
SO1886 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
SO0400 +0.6 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO1155 +0.6 2.4 hypothetical protein (NCBI ptt file) compare
SO3177 +0.6 5.3 formyl transferase domain protein (NCBI ptt file) compare
SO3183 +0.6 5.0 perosamine synthetase-related protein (NCBI ptt file) compare
SO1344 rseB +0.6 1.3 sigma-E factor regulatory protein RseB (NCBI ptt file) compare
SO3191 +0.6 3.8 chain length determinant protein (NCBI ptt file) compare
SO2046 +0.6 1.7 transcriptional regulator, MarR family (NCBI ptt file) compare
SO3147 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
SO4423 +0.6 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO0543 +0.6 0.8 hypothetical protein (NCBI ptt file) compare
SO1925 +0.6 2.4 HlyD family secretion protein (NCBI ptt file) compare
SO0714 +0.6 3.0 monoheme cytochrome c (NCBI ptt file) compare
SO3887 +0.6 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2146 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
SO3766 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
SO2504 +0.6 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO3119 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
SO3745 rfaE +0.6 4.4 ADP-heptose synthase (NCBI ptt file) compare
SO2829 +0.6 1.3 conserved domain protein (NCBI ptt file) compare
SO3252 cheV-3 +0.6 3.9 chemotaxis protein CheV (NCBI ptt file) compare
SO2016 htpG +0.6 1.5 heat shock protein HtpG (NCBI ptt file) compare
SO1021 nuoA +0.6 1.5 NADH dehydrogenase I, A subunit (NCBI ptt file) compare
SO3184 +0.6 5.1 conserved hypothetical protein (NCBI ptt file) compare
SO1991 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0321 +0.6 2.0 hypothetical protein (NCBI ptt file) compare
SOA0106 +0.5 5.3 methyl-accepting chemotaxis protein (NCBI ptt file) compare
SO4275.3 +0.5 1.5 hypothetical prophage Sf6-like integrase (NCBI ptt file) compare
SO0808 +0.5 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO3171 +0.5 2.9 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO3174 +0.5 4.1 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO3180 +0.5 4.4 glycosyl transferase, group 2 family protein (NCBI ptt file) compare
SO3182 +0.5 3.6 acetyltransferase, GNAT family (NCBI ptt file) compare
SO3393 +0.5 0.9 transcriptional regulator, TetR family (NCBI ptt file) compare
SO1247 +0.5 2.2 hypothetical protein (NCBI ptt file) compare
SO4576 +0.5 3.4 O-succinylbenzoic acid--CoA ligase, putative (NCBI ptt file) compare
SO0297 +0.5 1.9 lipoprotein, putative (NCBI ptt file) compare
SO0603 hfq +0.5 0.4 host factor-I protein (NCBI ptt file) compare
SO3176 +0.5 4.4 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO3828 +0.5 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO2484 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO1788 miaE +0.5 1.7 tRNA-(MS[2]IO[6]A)-hydroxylase (NCBI ptt file) compare
SO2101 +0.5 0.6 lipoprotein, putative (NCBI ptt file) compare
SO2987 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
SO3117 +0.5 1.8 thioredoxin, putative (NCBI ptt file) compare
SO1380 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3367 +0.5 1.9 conserved hypothetical protein TIGR00091 (NCBI ptt file) compare
SO3358 +0.5 2.2 HAM1 protein (NCBI ptt file) compare
SO3090 +0.5 2.6 MoxR domain protein (NCBI ptt file) compare
SO4604 +0.5 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO1566 +0.5 2.0 acetyltransferase, GNAT family (NCBI ptt file) compare
SO2194 +0.5 2.1 OmpA family protein (NCBI ptt file) compare
SO3188 rfbB +0.5 3.6 dTDP-glucose 4,6-dehydratase (NCBI ptt file) compare
SO3639 ksgA +0.5 0.3 dimethyladenosine transferase (NCBI ptt file) compare
SO0556 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
SO_3079 +0.5 0.5 no description compare
SO0664 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
SO2268 hscA +0.5 1.0 chaperone protein HscA (NCBI ptt file) compare
SO3142.2 +0.5 1.9 hypothetical Na+/H+ antiporte (NCBI ptt file) compare
SO2297 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO1188 +0.5 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO1711 +0.5 2.3 hypothetical protein (NCBI ptt file) compare
SO2797 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO4322 +0.5 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO3185 +0.5 3.8 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO2618 +0.5 1.7 ATP-binding protein, Mrp/Nbp35 family (NCBI ptt file) compare
SO1654 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
SO3031 +0.4 2.0 siderophore biosynthesis protein, putative (NCBI ptt file) compare
SO3819 +0.4 1.4 nitrogen regulatory protein P-II (NCBI ptt file) compare
SO2869 +0.4 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO_3452 +0.4 1.1 no description compare
SO4008 +0.4 3.4 smc-like chromosome partitioning protein (DUF3584) (from data) compare
SO4574 +0.4 3.0 hydrolase, alpha/beta fold family (NCBI ptt file) compare
SO4276 +0.4 2.3 hypothetical protein (NCBI ptt file) compare
SO0572 +0.4 2.5 enoyl-CoA hydratase/isomerase family protein (NCBI ptt file) compare
SO2234 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
SO4185 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO2962 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO1995 +0.4 1.8 peptidyl-prolyl cis-trans isomerase, FkbP family (NCBI ptt file) compare
SO3819.1 +0.4 1.7 hypothetical ammonia permease (NCBI ptt file) compare
SO0752 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
SO3175 asnB-2 +0.4 3.8 asparagine synthetase, glutamine-hydrolyzing (NCBI ptt file) compare
SO3851 +0.4 0.7 hypothetical protein (NCBI ptt file) compare
SO2408 +0.4 1.7 radical activating enzyme (NCBI ptt file) compare
SO0309 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO3350 pilU +0.4 2.8 twitching motility protein PilU (NCBI ptt file) compare
SO2573 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO3886 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
SO3051 +0.4 2.2 hypothetical xanthine dehydrogenase accessory factor (NCBI ptt file) compare
SO3169 +0.4 0.7 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO0964 +0.4 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO3193 +0.4 3.3 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO2656 +0.4 0.9 hypothetical protein (NCBI ptt file) compare
SO2250 nagZ +0.4 1.0 beta-hexosaminidase (NCBI ptt file) compare
SO0414 pilD +0.4 0.6 type 4 prepilin-like proteins leader peptide processing enzyme (NCBI ptt file) compare
SO3173 +0.4 3.1 UDP-galactose 4-epimerase, putative (NCBI ptt file) compare
SO1405 +0.4 2.7 transglutaminase family protein (NCBI ptt file) compare
SO2213.1 +0.4 0.4 hypothetical glucose-galactose transporter (NCBI ptt file) compare
SO3550 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
SO3325 +0.4 1.2 nrfJ-related protein (NCBI ptt file) compare
SO3519 glnB-2 +0.4 1.6 nitrogen regulatory protein P-II 1 (NCBI ptt file) compare
SO1745 +0.4 1.0 3-beta hydroxysteroid dehydrogenase/isomerase family protein (NCBI ptt file) compare
SO2782 +0.4 2.4 maf protein, putative (NCBI ptt file) compare
SO1960 +0.4 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO3378 +0.4 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO3157 +0.4 2.7 lipoprotein, putative (NCBI ptt file) compare
SO1518 +0.4 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO2998 +0.4 0.6 hypothetical protein (NCBI ptt file) compare
SO1552.1 +0.4 1.0 hypothetical protease with the C-terminal PDZ domain (NCBI ptt file) compare
SO4678 +0.4 2.7 heptosyl transferase, glycosyltransferase family 9 protein (NCBI ptt file) compare
SO3314 +0.4 1.5 fimbrial biogenesis and twitching motility protein, putative (NCBI ptt file) compare
SO_3820 +0.4 1.1 no description compare
SO1395 +0.4 0.6 membrane protein,putative (NCBI ptt file) compare
SO2183 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO3194 +0.4 2.4 transcriptional activator rfaH, putative (NCBI ptt file) compare
SO2442 thiS +0.4 0.6 thiS protein, putative (NCBI ptt file) compare
SO1503 +0.4 1.6 ABC transporter, periplasmic substrate-binding protein, putative (NCBI ptt file) compare
SO0050 +0.4 2.0 rhodanese domain protein (NCBI ptt file) compare
SO0039 +0.4 1.8 hypothetical globin (NCBI ptt file) compare
SO2039 +0.4 2.1 conserved domain protein (NCBI ptt file) compare
SO2660 +0.4 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO4007 +0.4 1.4 predicted chromosome partitioning protein (with smc-like SO4008) (from data) compare
SO2914 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO0508.1 +0.4 0.9 hypothetical Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit (NCBI ptt file) compare
SO3015 +0.4 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO0868 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO1990 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
SO2617 udk +0.4 0.8 uridine kinase (NCBI ptt file) compare
SO3011 +0.4 0.8 hypothetical protein (NCBI ptt file) compare
SO1070 katB +0.4 2.7 catalase (NCBI ptt file) compare
SO3668 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0871 folK-1 +0.4 0.4 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (NCBI ptt file) compare
SO2247 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO3346 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO0549 +0.4 2.2 chemotaxis protein CheY/response regulator receiver domain protein (NCBI ptt file) compare
SO3900 +0.4 1.6 yqiA-like hydrolase, affects the cell envelope (from data) compare
SO0651 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO0716 +0.4 1.2 monoheme cytochrome c, putative (NCBI ptt file) compare
SO1264 +0.4 2.3 hypothetical oxidoreductase (NCBI ptt file) compare
SO2092 hypC +0.4 1.2 hydrogenase assembly chaperone hypC/hupF (NCBI ptt file) compare
SO0504 fre +0.4 1.7 NAD(P)H-flavin reductase (NCBI ptt file) compare
SO0613 pabA +0.4 1.4 para-aminobenzoate synthase glutamine amidotransferase, component II (NCBI ptt file) compare
SO3389 +0.4 2.8 sensory box protein (NCBI ptt file) compare
SO4315 hemX +0.4 1.9 hemX protein (NCBI ptt file) compare
SO3867 +0.4 1.5 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO2097 hydC +0.4 1.9 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Shewanella oneidensis MR-1 in harv experiments

For harv Sodium D,L-Lactate across organisms