Experiment set10IT085 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS01210 -4.2 -4.8 tyrosine recombinase XerC compare
BWI76_RS09970 -4.0 -3.5 porin OmpA compare
BWI76_RS23240 -4.0 -4.7 exonuclease V subunit gamma compare
BWI76_RS23230 -3.8 -3.7 exodeoxyribonuclease V subunit beta compare
BWI76_RS18135 -3.7 -6.1 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS24400 -3.4 -7.3 outer membrane channel protein TolC compare
BWI76_RS26665 -3.3 -3.7 DNA-binding response regulator compare
BWI76_RS18130 -3.2 -3.7 zinc ABC transporter substrate-binding protein compare
BWI76_RS09660 -3.1 -3.4 DNA translocase FtsK compare
BWI76_RS15825 -3.1 -2.6 hypothetical protein compare
BWI76_RS06740 -2.9 -5.4 50S ribosomal protein L36 compare
BWI76_RS21070 -2.9 -2.9 outer membrane protein assembly factor BamB compare
BWI76_RS06780 -2.9 -6.5 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS25215 -2.7 -7.7 phospholipid-binding protein MlaC compare
BWI76_RS08530 -2.7 -3.1 protein TolA compare
BWI76_RS01095 -2.7 -2.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS25225 -2.6 -7.8 ABC transporter permease compare
BWI76_RS25220 -2.6 -3.1 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS18140 -2.6 -2.2 zinc ABC transporter permease compare
BWI76_RS04530 -2.5 -1.7 peptidylprolyl isomerase SurA compare
BWI76_RS26570 -2.4 -3.5 anion permease compare
BWI76_RS08605 -2.3 -2.9 phosphoglyceromutase compare
BWI76_RS19905 -2.3 -6.5 OmpK36 porin compare
BWI76_RS06775 -2.2 -9.1 multidrug efflux RND transporter permease subunit compare
BWI76_RS01325 -2.2 -2.6 twin-arginine translocase subunit TatB compare
BWI76_RS01115 -2.2 -4.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS25230 -2.1 -8.2 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS08500 -2.1 -4.7 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS26670 -2.1 -7.5 two-component sensor histidine kinase compare
BWI76_RS08520 -2.0 -1.5 colicin transporter TolQ compare
BWI76_RS00345 -2.0 -4.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS01090 -2.0 -6.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS01330 -1.9 -4.0 twin-arginine translocase subunit TatC compare
BWI76_RS04510 -1.9 -1.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS27310 -1.9 -7.2 glycosyltransferase compare
BWI76_RS26405 -1.9 -2.2 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS23265 -1.9 -4.1 hypothetical protein compare
BWI76_RS09640 -1.8 -4.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS08525 -1.8 -4.4 colicin transporter compare
BWI76_RS01080 -1.8 -8.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS03045 -1.8 -1.7 hypothetical protein compare
BWI76_RS01135 -1.7 -4.5 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS20475 -1.7 -4.4 phospholipid-binding lipoprotein MlaA compare
BWI76_RS02410 -1.7 -2.2 EF-P beta-lysylation protein EpmB compare
BWI76_RS25335 -1.7 -3.1 stringent starvation protein A compare
BWI76_RS01110 -1.7 -6.2 TDP-fucosamine acetyltransferase compare
BWI76_RS09635 -1.7 -2.9 amino acid ABC transporter ATP-binding protein compare
BWI76_RS24275 -1.7 -4.3 biopolymer transport protein ExbD compare
BWI76_RS00240 -1.6 -2.4 FMN-binding protein MioC compare
BWI76_RS06540 -1.6 -3.2 DNA-binding protein HU-beta compare
BWI76_RS27290 -1.6 -7.1 hypothetical protein compare
BWI76_RS25600 -1.6 -1.2 tRNA-Thr compare
BWI76_RS08535 -1.6 -1.7 translocation protein TolB compare
BWI76_RS18360 -1.6 -2.8 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS14770 -1.6 -1.9 PTS IIA 2 domain protein compare
BWI76_RS26620 -1.6 -1.3 Fe-S biogenesis protein NfuA compare
BWI76_RS04100 -1.6 -4.2 peptide chain release factor 3 compare
BWI76_RS20650 -1.6 -1.5 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS02815 -1.5 -2.8 fructose-bisphosphatase class I compare
BWI76_RS05015 -1.5 -2.3 transcriptional regulator compare
BWI76_RS08495 -1.5 -4.1 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS20360 -1.5 -1.4 cell division protein DedD compare
BWI76_RS00875 -1.5 -4.9 DNA-binding transcriptional regulator FabR compare
BWI76_RS17190 -1.5 -2.1 TonB system transport protein TonB compare
BWI76_RS12280 -1.5 -5.2 hypothetical protein compare
BWI76_RS01220 -1.5 -5.7 DNA-dependent helicase II compare
BWI76_RS16000 -1.5 -1.7 multidrug transporter subunit MdtI compare
BWI76_RS19010 -1.5 -2.4 polysaccharide pyruvyl transferase yvff compare
BWI76_RS26200 -1.4 -6.0 starch synthase compare
BWI76_RS15835 -1.4 -1.2 hypothetical protein compare
BWI76_RS10815 -1.4 -3.4 iron permease compare
BWI76_RS26455 -1.4 -3.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS20720 -1.4 -1.6 hypothetical protein compare
BWI76_RS25060 -1.4 -2.3 lipoprotein NlpI compare
BWI76_RS22950 -1.4 -2.0 membrane protein compare
BWI76_RS04715 -1.4 -2.3 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS26775 -1.4 -3.7 endo-1,4-D-glucanase compare
BWI76_RS15115 -1.4 -5.3 MFS transporter compare
BWI76_RS27875 -1.4 -1.8 membrane protein compare
BWI76_RS11525 -1.3 -2.0 HNH endonuclease compare
BWI76_RS09190 -1.3 -4.9 hypothetical protein compare
BWI76_RS05075 -1.3 -1.2 type II secretion system protein GspG compare
BWI76_RS13330 -1.3 -1.7 tellurite resistance methyltransferase TehB compare
BWI76_RS26460 -1.3 -3.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS01125 -1.3 -1.7 4-alpha-L-fucosyltransferase compare
BWI76_RS23885 -1.3 -1.7 2-octaprenylphenol hydroxylase compare
BWI76_RS15635 -1.3 -3.2 hypothetical protein compare
BWI76_RS21310 -1.2 -1.3 DNA repair protein RecO compare
BWI76_RS22050 -1.2 -2.4 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI conserved
BWI76_RS24280 -1.2 -3.7 biopolymer transporter ExbB compare
BWI76_RS01870 -1.2 -3.5 diacylglycerol kinase compare
BWI76_RS21350 -1.2 -1.9 anti-RNA polymerase sigma factor SigE compare
BWI76_RS05200 -1.2 -2.2 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS21345 -1.2 -2.5 sigma-E factor regulatory protein RseB compare
BWI76_RS25480 -1.2 -2.4 ribonuclease E/G compare
BWI76_RS04305 -1.2 -1.0 molecular chaperone DnaJ compare
BWI76_RS25960 -1.2 -3.8 NUDIX hydrolase compare
BWI76_RS11300 -1.1 -1.3 cupin compare
BWI76_RS15830 -1.1 -2.8 hypothetical protein compare
BWI76_RS03920 -1.1 -2.5 N-acetyltransferase compare
BWI76_RS16445 -1.1 -2.7 auxiliary transporter membrane fusion protein compare
BWI76_RS17975 -1.1 -3.7 tail-specific protease compare
BWI76_RS11275 -1.1 -3.7 sensor protein PhoQ compare
BWI76_RS24750 -1.1 -3.1 membrane protein compare
BWI76_RS24500 -1.1 -1.6 urease subunit gamma compare
BWI76_RS26590 -1.1 -2.4 transcriptional regulator compare
BWI76_RS24960 -1.1 -3.7 N-acetyltransferase compare
BWI76_RS01105 -1.1 -2.9 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS25935 -1.0 -2.9 glutathione-regulated potassium-efflux system ancillary protein KefG compare
BWI76_RS01085 -1.0 -6.0 polysaccharide chain length modulation protein compare
BWI76_RS13955 -1.0 -2.0 hypothetical protein compare
BWI76_RS19845 -1.0 -3.8 phosphatase compare
BWI76_RS17980 -1.0 -2.6 RNA chaperone ProQ compare
BWI76_RS13560 -1.0 -1.1 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS22055 -1.0 -5.1 ribonucleotide-diphosphate reductase conserved
BWI76_RS10500 -1.0 -2.3 flavoprotein monooxygenase compare
BWI76_RS12295 -1.0 -2.9 hypothetical protein compare
BWI76_RS14950 -1.0 -3.2 glycosylasparaginase compare
BWI76_RS12390 -1.0 -2.6 antibiotic biosynthesis monooxygenase compare
BWI76_RS21000 -1.0 -4.4 exopolyphosphatase compare
BWI76_RS15850 -1.0 -2.6 DUF1317 domain-containing protein compare
BWI76_RS27305 -0.9 -3.9 glycosyl transferase compare
BWI76_RS19375 -0.9 -1.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS04050 -0.9 -1.8 hydroxamate siderophore iron reductase FhuF compare
BWI76_RS15110 -0.9 -7.1 putative excinuclease ABC subunit A compare
BWI76_RS26190 -0.9 -3.1 glycerol-3-phosphate dehydrogenase compare
BWI76_RS05835 -0.9 -1.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS06325 -0.9 -2.1 hypothetical protein compare
BWI76_RS09960 -0.9 -1.1 Lon protease compare
BWI76_RS00720 -0.9 -1.3 DNA-binding response regulator compare
BWI76_RS22060 -0.9 -5.3 ribonucleotide-diphosphate reductase subunit beta conserved
BWI76_RS00940 -0.9 -5.0 transcriptional regulator HdfR compare
BWI76_RS07645 -0.9 -1.3 short-chain dehydrogenase/reductase compare
BWI76_RS15435 -0.9 -1.3 hypothetical protein compare
BWI76_RS27425 -0.9 -1.6 DNA-directed RNA polymerase subunit omega compare
BWI76_RS25920 -0.9 -1.0 peptidylprolyl isomerase compare
BWI76_RS27440 -0.9 -2.8 DNA helicase RecG compare
BWI76_RS17400 -0.9 -1.1 transporter compare
BWI76_RS23830 -0.9 -4.2 hypothetical protein compare
BWI76_RS21370 -0.9 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS23970 -0.8 -1.8 mechanosensitive ion channel protein MscS compare
BWI76_RS15665 -0.8 -1.9 hypothetical protein compare
BWI76_RS27435 -0.8 -4.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS19850 -0.8 -2.1 tRNA-Pro compare
BWI76_RS01885 -0.8 -1.2 CsbD family protein compare
BWI76_RS15840 -0.8 -2.8 prophage protein compare
BWI76_RS20355 -0.8 -2.0 colicin V production protein compare
BWI76_RS14510 -0.8 -4.2 MFS transporter compare
BWI76_RS14515 -0.8 -3.4 yersiniabactin-iron ABC transporter permease ATP-binding protein YbtQ compare
BWI76_RS05175 -0.8 -6.8 dGTPase compare
BWI76_RS15650 -0.8 -2.4 gp5 compare
BWI76_RS13215 -0.8 -1.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS02695 -0.8 -1.9 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS01995 -0.8 -1.0 AraC family transcriptional regulator compare
BWI76_RS00010 -0.8 -3.0 DNA replication and repair protein RecF compare
BWI76_RS20565 -0.8 -1.4 hypothetical protein compare
BWI76_RS22095 -0.8 -1.6 multidrug export protein EmrA compare
BWI76_RS20435 -0.8 -1.3 chorismate synthase compare
BWI76_RS10740 -0.8 -2.1 NAD(P)H:quinone oxidoreductase compare
BWI76_RS10820 -0.8 -2.4 iron uptake system protein EfeO compare
BWI76_RS18785 -0.8 -2.6 exodeoxyribonuclease I compare
BWI76_RS17720 -0.8 -0.9 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS22235 -0.8 -1.8 transcriptional regulator GutM compare
BWI76_RS01200 -0.8 -1.5 diaminopimelate epimerase compare
BWI76_RS27390 -0.8 -2.1 ribonuclease PH compare
BWI76_RS07790 -0.8 -1.7 plasmid stabilization protein compare
BWI76_RS19865 -0.8 -1.1 ecotin compare
BWI76_RS01065 -0.8 -2.1 ATP-dependent RNA helicase RhlB compare
BWI76_RS19240 -0.8 -1.1 ABC transporter substrate-binding protein compare
BWI76_RS14825 -0.8 -1.9 dienelactone hydrolase family protein compare
BWI76_RS07595 -0.8 -1.7 putative oxidoreductase compare
BWI76_RS06190 -0.8 -2.0 hypothetical protein compare
BWI76_RS19035 -0.7 -3.8 dTDP-rhamnosyl transferase compare
BWI76_RS12225 -0.7 -1.7 hypothetical protein compare
BWI76_RS14615 -0.7 -1.0 hypothetical protein compare
BWI76_RS02530 -0.7 -0.9 tRNA dimethylallyltransferase compare
BWI76_RS15810 -0.7 -3.1 hypothetical protein compare
BWI76_RS10745 -0.7 -0.9 hypothetical protein compare
BWI76_RS26395 -0.7 -2.3 cell division protein FtsE compare
BWI76_RS15660 -0.7 -1.0 hypothetical protein compare
BWI76_RS03105 -0.7 -0.9 myo-inosose-2 dehydratase compare
BWI76_RS15700 -0.7 -2.0 hypothetical protein compare
BWI76_RS14970 -0.7 -1.1 pyrroline-5-carboxylate reductase compare
BWI76_RS27165 -0.7 -1.9 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS02785 -0.7 -2.1 AIG2 family protein compare
BWI76_RS16215 -0.7 -3.1 hypothetical protein compare
BWI76_RS11200 -0.7 -2.1 transpeptidase compare
BWI76_RS16645 -0.7 -1.6 DeoR family transcriptional regulator compare
BWI76_RS05425 -0.7 -2.4 EEP domain-containing protein compare
BWI76_RS00180 -0.7 -1.2 F0F1 ATP synthase subunit epsilon compare
BWI76_RS10965 -0.7 -2.6 sulfurtransferase compare
BWI76_RS22625 -0.7 -1.3 transcriptional regulator compare
BWI76_RS16485 -0.7 -1.1 ribonuclease T compare
BWI76_RS08040 -0.7 -1.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS09110 -0.7 -1.1 glutathione ABC transporter permease GsiD compare
BWI76_RS11980 -0.7 -1.3 DeoR family transcriptional regulator compare
BWI76_RS23320 -0.7 -1.1 hypothetical protein compare
BWI76_RS00260 -0.7 -3.9 ATPase RavA compare
BWI76_RS02000 -0.7 -3.5 transcriptional regulator compare
BWI76_RS00760 -0.7 -2.1 cell division protein FtsN compare


Specific Phenotypes

For 3 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms