Experiment set10IT084 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS21075 +2.3 3.1 membrane protein compare
BWI76_RS09530 +1.4 1.9 hypothetical protein compare
BWI76_RS05465 +1.2 1.8 amidohydrolase compare
BWI76_RS26650 +1.1 6.6 iron transporter compare
BWI76_RS23340 +1.0 3.0 transcriptional regulator compare
BWI76_RS16805 +1.0 2.3 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS23895 +1.0 1.7 Xaa-Pro aminopeptidase compare
BWI76_RS07475 +1.0 1.4 DNA-binding transcriptional regulator RamA compare
BWI76_RS18870 +1.0 1.7 protein NifZ compare
BWI76_RS07725 +1.0 1.2 iron-enterobactin transporter permease compare
BWI76_RS13240 +0.9 1.7 hypothetical protein compare
BWI76_RS21235 +0.9 1.4 hypothetical protein compare
BWI76_RS13545 +0.9 1.5 N-acetyltransferase compare
BWI76_RS09335 +0.9 1.7 baseplate assembly protein W compare
BWI76_RS19330 +0.9 1.0 HAD family hydrolase compare
BWI76_RS05885 +0.8 1.7 anion permease compare
BWI76_RS26645 +0.8 6.2 ferrous iron transporter B compare
BWI76_RS16360 +0.8 1.6 electron transport complex subunit RsxB compare
BWI76_RS23120 +0.8 2.2 propanediol dehydratase medium subunit compare
BWI76_RS20475 +0.8 1.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS05235 +0.8 1.3 hypothetical protein compare
BWI76_RS11250 +0.7 0.8 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS09470 +0.7 3.1 putrescine ABC transporter permease compare
BWI76_RS11710 +0.7 2.4 nucleotide excision repair endonuclease compare
BWI76_RS24180 +0.7 1.5 hypothetical protein compare
BWI76_RS15940 +0.7 2.1 DMSO reductase maturation protein DsmD compare
BWI76_RS09560 +0.7 1.9 DoxX family membrane protein compare
BWI76_RS17765 +0.7 2.5 hypothetical protein compare
BWI76_RS24810 +0.7 1.1 hypothetical protein compare
BWI76_RS07635 +0.7 2.9 Hok/gef cell toxic protein compare
BWI76_RS09305 +0.7 1.3 hypothetical protein compare
BWI76_RS12485 +0.7 1.5 TyrR family transcriptional regulator compare
BWI76_RS15350 +0.7 1.3 hypothetical protein compare
BWI76_RS19460 +0.7 1.4 lipoprotein compare
BWI76_RS11735 +0.7 2.0 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS22310 +0.7 2.0 hydrogenase 3 small subunit compare
BWI76_RS22960 +0.7 2.5 YgdI/YgdR family lipoprotein compare
BWI76_RS15260 +0.7 1.5 hypothetical protein compare
BWI76_RS11060 +0.7 1.1 septum formation inhibitor Maf compare
BWI76_RS12600 +0.7 2.8 MFS transporter compare
BWI76_RS16515 +0.7 1.8 LysR family transcriptional regulator compare
BWI76_RS06340 +0.7 0.8 hypothetical protein compare
BWI76_RS22815 +0.7 4.6 hybrid sensor histidine kinase/response regulator compare
BWI76_RS13970 +0.7 1.5 ABC transporter compare
BWI76_RS27605 +0.6 1.7 hypothetical protein compare
BWI76_RS07645 +0.6 0.9 short-chain dehydrogenase/reductase compare
BWI76_RS12745 +0.6 2.2 putative prophage membrane protein compare
BWI76_RS08310 +0.6 0.9 potassium-transporting ATPase subunit C compare
BWI76_RS06465 +0.6 1.7 IclR family transcriptional regulator compare
BWI76_RS06080 +0.6 1.7 taurine dioxygenase compare
BWI76_RS19985 +0.6 2.0 MFS transporter compare
BWI76_RS02655 +0.6 1.7 hypothetical protein compare
BWI76_RS14065 +0.6 1.3 hypothetical protein compare
BWI76_RS13095 +0.6 1.3 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS14415 +0.6 1.9 transcriptional regulator, TetR family protein compare
BWI76_RS14735 +0.6 2.7 type 11 methyltransferase compare
BWI76_RS16175 +0.6 3.6 p-aminobenzoyl-glutamate transporter compare
BWI76_RS08640 +0.6 1.7 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS11835 +0.6 1.1 putative regulatory protein MarR compare
BWI76_RS19495 +0.6 1.0 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS26830 +0.6 2.8 endoglucanase compare
BWI76_RS17920 +0.6 2.0 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS17855 +0.6 3.0 alginate lyase compare
BWI76_RS11460 +0.6 2.2 DUF441 family protein compare
BWI76_RS04515 +0.6 1.2 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS03835 +0.6 2.0 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
BWI76_RS06745 +0.6 1.9 N-acetyltransferase GCN5 compare
BWI76_RS19670 +0.6 1.9 S-formylglutathione hydrolase compare
BWI76_RS19560 +0.6 2.5 beta-1,4-xylanase compare
BWI76_RS24820 +0.6 1.8 glycerate 2-kinase compare
BWI76_RS10415 +0.6 3.0 endoribonuclease L-PSP compare
BWI76_RS16815 +0.6 0.8 periplasmic binding protein compare
BWI76_RS16140 +0.6 1.4 3-oxoadipate CoA-transferase compare
BWI76_RS02690 +0.6 1.6 hypothetical protein compare
BWI76_RS08335 +0.6 2.8 deoxyribodipyrimidine photo-lyase compare
BWI76_RS16675 +0.6 1.1 ABC transporter compare
BWI76_RS07730 +0.6 1.1 iron-enterobactin transporter membrane protein compare
BWI76_RS10060 +0.5 1.1 acylphosphatase compare
BWI76_RS19750 +0.5 1.6 elongation factor P-like protein YeiP compare
BWI76_RS07765 +0.5 1.2 thioesterase compare
BWI76_RS20900 +0.5 0.8 outer membrane protein assembly factor BamC compare
BWI76_RS27195 +0.5 2.6 alpha-hydroxy-acid oxidizing enzyme compare
BWI76_RS21220 +0.5 1.9 membrane protein compare
BWI76_RS13160 +0.5 1.4 azoreductase compare
BWI76_RS18605 +0.5 0.8 oxidoreductase molybdopterin-binding protein compare
BWI76_RS06290 +0.5 1.4 ACP phosphodiesterase compare
BWI76_RS22515 +0.5 1.8 acyl dehydratase compare
BWI76_RS11770 +0.5 1.2 hypothetical protein compare
BWI76_RS18335 +0.5 2.9 DNA-binding response regulator compare
BWI76_RS23560 +0.5 1.8 hypothetical protein compare
BWI76_RS03815 +0.5 1.8 hypothetical protein compare
BWI76_RS15980 +0.5 1.3 lysine transporter LysE compare
BWI76_RS06180 +0.5 2.3 hypothetical protein compare
BWI76_RS23705 +0.5 2.4 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS05075 +0.5 0.8 type II secretion system protein GspG compare
BWI76_RS08510 +0.5 1.5 cyd operon protein YbgE compare
BWI76_RS00865 +0.5 1.5 DNA-binding transcriptional regulator OxyR compare
BWI76_RS01565 +0.5 1.1 NADH pyrophosphatase compare
BWI76_RS15275 +0.5 3.3 isomerase compare
BWI76_RS25375 +0.5 1.7 hypothetical protein compare
BWI76_RS26290 +0.5 2.5 glycerol-3-phosphate ABC transporter ATP-binding protein compare
BWI76_RS22395 +0.5 3.4 hypothetical protein compare
BWI76_RS09630 +0.5 1.6 leucyl/phenylalanyl-tRNA--protein transferase compare
BWI76_RS25865 +0.5 2.6 ferredoxin compare
BWI76_RS19205 +0.5 1.9 putative proline iminopeptidase compare
BWI76_RS11530 +0.5 2.9 chitinase compare
BWI76_RS08405 +0.5 1.1 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS05655 +0.5 1.3 hypothetical protein compare
BWI76_RS24925 +0.5 1.1 DnaA initiator-associating protein DiaA compare
BWI76_RS23670 +0.5 2.0 alkaline phosphatase compare
BWI76_RS26380 +0.5 3.0 decarboxylase compare
BWI76_RS16640 +0.5 2.2 threonine transporter compare
BWI76_RS13275 +0.5 1.3 hypothetical protein compare
BWI76_RS19240 +0.5 1.1 ABC transporter substrate-binding protein compare
BWI76_RS02200 +0.5 1.7 phosphonate C-P lyase system protein PhnL compare
BWI76_RS09275 +0.5 2.3 major capsid protein compare
BWI76_RS24900 +0.5 1.0 DeoR family transcriptional regulator compare
BWI76_RS05900 +0.5 2.3 phosphonate ABC transporter, permease protein PhnE compare
BWI76_RS11010 +0.5 2.0 30S ribosomal protein S5 alanine N-acetyltransferase compare
BWI76_RS24660 +0.5 2.3 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
BWI76_RS22240 +0.5 2.2 transcriptional regulator compare
BWI76_RS06125 +0.5 2.3 D-alanine--D-alanine ligase A compare
BWI76_RS14620 +0.5 1.5 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase compare
BWI76_RS16810 +0.5 2.5 RpiR family transcriptional regulator compare
BWI76_RS12910 +0.5 2.0 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS17565 +0.5 1.3 hypothetical protein compare
BWI76_RS01905 +0.5 1.6 envelope stress response protein PspG compare
BWI76_RS09360 +0.5 2.0 hypothetical protein compare
BWI76_RS01720 +0.5 2.1 L-sorbose 1-phosphate reductase (EC 1.1.1.-) (from data) compare
BWI76_RS14870 +0.5 1.7 hypothetical protein compare
BWI76_RS12595 +0.5 2.6 hypothetical protein compare
BWI76_RS03060 +0.5 3.1 ATP-binding protein compare
BWI76_RS16055 +0.5 2.0 malonate decarboxylase subunit epsilon compare
BWI76_RS06165 +0.5 1.5 phosphate starvation-inducible protein PsiF compare
BWI76_RS11370 +0.5 1.4 iron-dicitrate transporter subunit FecD compare
BWI76_RS23270 +0.5 3.2 phosphoenolpyruvate--protein phosphotransferase PtsP compare
BWI76_RS06665 +0.5 1.3 membrane protein compare
BWI76_RS13895 +0.5 1.4 LysR family transcriptional regulator compare
BWI76_RS22855 +0.5 1.6 hypothetical protein compare
BWI76_RS14830 +0.5 1.9 hypothetical protein compare
BWI76_RS08585 +0.5 1.6 nicotinamide riboside transporter PnuC compare
BWI76_RS10825 +0.5 1.6 deferrochelatase/peroxidase EfeB compare
BWI76_RS04655 +0.5 1.3 shikimate dehydrogenase compare
BWI76_RS21660 +0.5 1.1 antirestriction protein compare
BWI76_RS00725 +0.5 1.8 periplasmic repressor CpxP compare
BWI76_RS10255 +0.5 2.2 dihydrodipicolinate synthase family protein compare
BWI76_RS21040 +0.5 1.9 peptidase M4 compare
BWI76_RS18230 +0.5 1.8 trehalose-6-phosphate synthase compare
BWI76_RS05950 +0.5 1.0 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS20805 +0.5 1.5 phosphate acetyltransferase compare
BWI76_RS14610 +0.5 2.3 putative hydrolase compare
BWI76_RS22640 +0.5 0.9 hypothetical protein compare
BWI76_RS04840 +0.5 2.4 prepilin peptidase-dependent pilin compare
BWI76_RS08275 +0.5 0.8 LexA regulated protein compare
BWI76_RS14040 +0.5 1.2 thiaminase compare
BWI76_RS10790 +0.5 1.5 hypothetical protein compare
BWI76_RS00450 +0.5 1.7 formate dehydrogenase accessory protein FdhE compare
BWI76_RS13420 +0.5 1.2 ABC transporter permease compare
BWI76_RS19100 +0.5 1.4 putative acid phosphatase compare
BWI76_RS02450 +0.4 2.7 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
BWI76_RS09595 +0.4 1.3 macrolide transporter subunit MacA compare
BWI76_RS20940 +0.4 1.3 uracil/xanthine transporter compare
BWI76_RS20325 +0.4 1.9 histidine/lysine/arginine/ornithine ABC transporter permease HisM compare
BWI76_RS10765 +0.4 2.2 pyrimidine utilization protein D compare
BWI76_RS16300 +0.4 1.7 bifunctional beta-cystathionase/maltose regulon regulatory protein compare
BWI76_RS14145 +0.4 2.0 dihydrolipoyl dehydrogenase compare
BWI76_RS16760 +0.4 1.2 lipase compare
BWI76_RS14540 +0.4 2.0 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS18065 +0.4 1.1 DNA polymerase III subunit theta compare
BWI76_RS21365 +0.4 2.5 tRNA (adenosine(37)-N6)-methyltransferase TrmM compare
BWI76_RS13975 +0.4 1.2 urea carboxylase compare
BWI76_RS15035 +0.4 0.9 metal ABC transporter permease compare
BWI76_RS05870 +0.4 1.6 ABC transporter compare
BWI76_RS20225 +0.4 2.5 hypothetical protein compare
BWI76_RS07450 +0.4 1.4 transcriptional regulator compare
BWI76_RS27855 +0.4 2.0 D-serine transporter DsdX compare
BWI76_RS04445 +0.4 2.0 citrate (pro-3S)-lyase subunit beta compare
BWI76_RS19620 +0.4 2.2 hypothetical protein compare
BWI76_RS00475 +0.4 2.1 sulfurtransferase FdhD compare
BWI76_RS10770 +0.4 0.9 pyrimidine utilization protein C compare
BWI76_RS24005 +0.4 1.8 cobalt ABC transporter ATP-binding protein compare
BWI76_RS03825 +0.4 2.3 4-hydroxyphenylacetate 3-monooxygenase compare
BWI76_RS08970 +0.4 1.3 glutamine ABC transporter permease GlnP compare
BWI76_RS11125 +0.4 0.9 metal-dependent hydrolase compare
BWI76_RS05880 +0.4 0.7 AraC-type DNA-binding domain-containing protein compare
BWI76_RS07385 +0.4 1.8 short-chain dehydrogenase/reductase SDR compare
BWI76_RS15440 +0.4 1.7 hypothetical protein compare
BWI76_RS13490 +0.4 1.6 pyrimidine-specific ribonucleoside hydrolase RihA compare
BWI76_RS07810 +0.4 2.4 sugar ABC transporter periplasmic sugar-binding protein compare
BWI76_RS00885 +0.4 1.5 tRNA (uridine(54)-C5)-methyltransferase TrmA compare
BWI76_RS13480 +0.4 0.9 XRE family transcriptional regulator compare
BWI76_RS18060 +0.4 2.1 hypothetical protein compare
BWI76_RS21485 +0.4 2.8 DUF4154 domain-containing protein compare
BWI76_RS19310 +0.4 0.6 ABC transporter permease compare
BWI76_RS03790 +0.4 1.7 hypothetical protein compare
BWI76_RS15785 +0.4 1.9 replication protein compare
BWI76_RS03120 +0.4 1.8 ABC transporter ATP-binding protein compare
BWI76_RS06320 +0.4 2.2 Xaa-Pro aminopeptidase compare
BWI76_RS09445 +0.4 1.0 NADPH-dependent oxidoreductase compare
BWI76_RS23945 +0.4 1.6 methylmalonyl-CoA decarboxylase compare


Specific Phenotypes

For 3 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms