Experiment set10IT083 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS18950 -7.5 -5.1 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS20355 -6.6 -4.7 colicin V production protein compare
BWI76_RS04465 -6.3 -4.3 carbamoyl-phosphate synthase small subunit compare
BWI76_RS26085 -5.6 -3.8 3-dehydroquinate synthase compare
BWI76_RS18955 -5.2 -6.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS23240 -5.0 -3.5 exonuclease V subunit gamma compare
BWI76_RS01615 -4.9 -10.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS04470 -4.7 -10.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS20965 -4.7 -6.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS05015 -4.6 -4.4 transcriptional regulator compare
BWI76_RS01210 -4.5 -5.5 tyrosine recombinase XerC compare
BWI76_RS18925 -4.3 -9.1 histidinol dehydrogenase compare
BWI76_RS18940 -4.3 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS18920 -4.3 -5.0 ATP phosphoribosyltransferase compare
BWI76_RS20350 -4.1 -7.0 amidophosphoribosyltransferase compare
BWI76_RS07070 -4.1 -6.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04250 -4.1 -10.1 homoserine kinase compare
BWI76_RS00990 -4.1 -10.4 ketol-acid reductoisomerase compare
BWI76_RS08385 -4.0 -5.4 citrate (Si)-synthase compare
BWI76_RS18930 -4.0 -4.5 histidinol-phosphate transaminase compare
BWI76_RS04255 -4.0 -11.9 threonine synthase compare
BWI76_RS09660 -4.0 -3.8 DNA translocase FtsK compare
BWI76_RS24400 -4.0 -8.0 outer membrane channel protein TolC compare
BWI76_RS18935 -3.9 -6.6 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS09755 -3.8 -10.2 phosphoserine transaminase compare
BWI76_RS00845 -3.8 -11.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS09970 -3.7 -5.2 porin OmpA compare
BWI76_RS02995 -3.7 -9.8 aspartate carbamoyltransferase compare
BWI76_RS00855 -3.7 -9.5 argininosuccinate lyase compare
BWI76_RS21265 -3.7 -12.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS21070 -3.6 -2.5 outer membrane protein assembly factor BamB compare
BWI76_RS07065 -3.6 -10.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS09760 -3.6 -6.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04240 -3.5 -2.3 thr operon leader peptide compare
BWI76_RS20895 -3.5 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00850 -3.4 -13.6 acetylglutamate kinase compare
BWI76_RS04160 -3.4 -9.5 phosphoserine phosphatase compare
BWI76_RS25225 -3.3 -4.9 ABC transporter permease compare
BWI76_RS11965 -3.3 -4.6 orotidine-5'-phosphate decarboxylase compare
BWI76_RS25230 -3.3 -7.6 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS25215 -3.3 -6.7 phospholipid-binding protein MlaC compare
BWI76_RS18140 -3.2 -7.3 zinc ABC transporter permease compare
BWI76_RS05840 -3.2 -5.0 glutamate 5-kinase compare
BWI76_RS23230 -3.2 -5.3 exodeoxyribonuclease V subunit beta compare
BWI76_RS23365 -3.2 -8.6 LysR family transcriptional regulator compare
BWI76_RS21475 -3.2 -7.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS10990 -3.1 -4.6 dihydroorotase compare
BWI76_RS23920 -3.1 -4.2 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS00835 -3.1 -12.7 phosphoenolpyruvate carboxylase compare
BWI76_RS04645 -3.1 -5.5 3-dehydroquinase compare
BWI76_RS01610 -3.1 -6.6 phosphoribosylamine--glycine ligase compare
BWI76_RS23220 -3.0 -10.1 amino-acid N-acetyltransferase compare
BWI76_RS23360 -3.0 -4.4 diaminopimelate decarboxylase compare
BWI76_RS04670 -3.0 -11.7 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04675 -2.9 -7.5 3-isopropylmalate dehydrogenase compare
BWI76_RS25115 -2.9 -6.9 argininosuccinate synthase compare
BWI76_RS04665 -2.9 -17.1 3-isopropylmalate dehydratase small subunit compare
BWI76_RS05835 -2.8 -2.5 gamma-glutamyl-phosphate reductase compare
BWI76_RS27310 -2.8 -11.4 glycosyltransferase compare
BWI76_RS00980 -2.8 -11.9 PLP-dependent threonine dehydratase compare
BWI76_RS27390 -2.8 -7.5 ribonuclease PH compare
BWI76_RS03010 -2.8 -7.2 ornithine carbamoyltransferase compare
BWI76_RS26570 -2.8 -4.1 anion permease compare
BWI76_RS04245 -2.8 -13.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS24285 -2.7 -8.5 cystathionine beta-lyase compare
BWI76_RS25220 -2.7 -4.0 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS09910 -2.7 -15.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS18135 -2.6 -7.4 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS00805 -2.6 -7.0 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS01655 -2.6 -9.9 homoserine O-succinyltransferase compare
BWI76_RS00975 -2.6 -7.9 dihydroxy-acid dehydratase compare
BWI76_RS22755 -2.6 -8.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS27385 -2.6 -6.7 orotate phosphoribosyltransferase compare
BWI76_RS09635 -2.5 -3.7 amino acid ABC transporter ATP-binding protein compare
BWI76_RS04680 -2.4 -11.9 2-isopropylmalate synthase compare
BWI76_RS25645 -2.4 -7.5 shikimate dehydrogenase compare
BWI76_RS18130 -2.4 -4.0 zinc ABC transporter substrate-binding protein compare
BWI76_RS02530 -2.4 -3.2 tRNA dimethylallyltransferase compare
BWI76_RS20475 -2.4 -6.5 phospholipid-binding lipoprotein MlaA compare
BWI76_RS26405 -2.4 -2.6 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS26000 -2.4 -8.4 aspartate aminotransferase family protein compare
BWI76_RS20435 -2.4 -1.5 chorismate synthase compare
BWI76_RS08500 -2.3 -5.4 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS21480 -2.3 -8.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS04685 -2.3 -8.1 putative leucine operon leader peptide compare
BWI76_RS21465 -2.3 -5.2 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS00345 -2.2 -4.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS00785 -2.2 -5.7 cystathionine gamma-synthase compare
BWI76_RS11840 -2.1 -4.4 tryptophan synthase subunit alpha compare
BWI76_RS21370 -2.1 -2.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS26200 -2.1 -6.5 starch synthase compare
BWI76_RS25960 -2.0 -5.4 NUDIX hydrolase compare
BWI76_RS09640 -2.0 -4.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS00965 -2.0 -1.5 acetolactate synthase 2 small subunit compare
BWI76_RS20155 -2.0 -2.9 NADH-quinone oxidoreductase subunit I compare
BWI76_RS20650 -1.9 -1.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS01325 -1.9 -3.7 twin-arginine translocase subunit TatB compare
BWI76_RS11855 -1.9 -7.1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS20160 -1.9 -4.6 NADH-quinone oxidoreductase subunit H compare
BWI76_RS06780 -1.9 -8.0 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS11850 -1.9 -10.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS09190 -1.9 -3.9 hypothetical protein compare
BWI76_RS05200 -1.9 -2.6 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS17720 -1.9 -1.8 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS21450 -1.8 -3.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS19845 -1.8 -4.9 phosphatase compare
BWI76_RS08495 -1.8 -5.6 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS09645 -1.8 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS26075 -1.8 -3.0 DNA adenine methylase compare
BWI76_RS23265 -1.8 -3.9 hypothetical protein compare
BWI76_RS22760 -1.8 -5.3 sulfite reductase subunit beta compare
BWI76_RS25335 -1.7 -2.3 stringent starvation protein A compare
BWI76_RS06775 -1.7 -8.1 multidrug efflux RND transporter permease subunit compare
BWI76_RS11860 -1.7 -7.9 anthranilate synthase component I compare
BWI76_RS11845 -1.7 -4.5 tryptophan synthase subunit beta compare
BWI76_RS15835 -1.7 -1.2 hypothetical protein compare
BWI76_RS00400 -1.6 -1.5 glutamine synthetase compare
BWI76_RS05260 -1.6 -2.0 chaperone compare
BWI76_RS22765 -1.6 -8.5 sulfite reductase subunit alpha compare
BWI76_RS02410 -1.6 -2.3 EF-P beta-lysylation protein EpmB compare
BWI76_RS02735 -1.6 -4.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS00240 -1.6 -2.2 FMN-binding protein MioC compare
BWI76_RS00875 -1.6 -4.8 DNA-binding transcriptional regulator FabR compare
BWI76_RS27290 -1.5 -8.7 hypothetical protein compare
BWI76_RS01330 -1.5 -3.4 twin-arginine translocase subunit TatC compare
BWI76_RS03045 -1.5 -1.6 hypothetical protein compare
BWI76_RS27875 -1.5 -1.8 membrane protein compare
BWI76_RS15810 -1.5 -4.9 hypothetical protein compare
BWI76_RS19840 -1.5 -1.4 hypothetical protein compare
BWI76_RS11275 -1.5 -7.0 sensor protein PhoQ compare
BWI76_RS15115 -1.5 -6.2 MFS transporter compare
BWI76_RS01220 -1.4 -5.9 DNA-dependent helicase II compare
BWI76_RS04530 -1.4 -1.3 peptidylprolyl isomerase SurA compare
BWI76_RS27430 -1.4 -1.7 (p)ppGpp synthetase compare
BWI76_RS15660 -1.4 -1.9 hypothetical protein compare
BWI76_RS14415 -1.3 -2.5 transcriptional regulator, TetR family protein compare
BWI76_RS16965 -1.3 -2.1 murein lipoprotein compare
BWI76_RS04100 -1.3 -3.2 peptide chain release factor 3 compare
BWI76_RS22690 -1.3 -2.4 adenylyl-sulfate kinase compare
BWI76_RS00985 -1.3 -5.1 transcriptional regulator IlvY compare
BWI76_RS00715 -1.3 -2.6 two-component sensor histidine kinase compare
BWI76_RS00180 -1.3 -1.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS16215 -1.3 -5.3 hypothetical protein compare
BWI76_RS20380 -1.2 -1.2 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS08525 -1.2 -2.8 colicin transporter compare
BWI76_RS00355 -1.2 -2.4 DNA polymerase I compare
BWI76_RS15825 -1.2 -2.6 hypothetical protein compare
BWI76_RS01350 -1.2 -1.2 NAD(P)H-flavin reductase compare
BWI76_RS04715 -1.2 -2.3 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS23480 -1.2 -7.4 EAL domain-containing protein compare
BWI76_RS23885 -1.2 -1.8 2-octaprenylphenol hydroxylase compare
BWI76_RS26395 -1.2 -4.2 cell division protein FtsE compare
BWI76_RS21350 -1.2 -1.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS19010 -1.2 -2.7 polysaccharide pyruvyl transferase yvff compare
BWI76_RS01795 -1.2 -4.4 hypothetical protein compare
BWI76_RS19805 -1.1 -3.2 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS00960 -1.1 -4.8 acetolactate synthase 2 catalytic subunit compare
BWI76_RS12090 -1.1 -1.0 HNH endonuclease compare
BWI76_RS13420 -1.1 -2.3 ABC transporter permease compare
BWI76_RS27165 -1.1 -3.3 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS06830 -1.1 -3.3 recombination protein RecR compare
BWI76_RS07740 -1.1 -2.0 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS13645 -1.1 -3.0 N-hydroxyarylamine O-acetyltransferase compare
BWI76_RS23760 -1.1 -1.6 tRNA-Gly compare
BWI76_RS15830 -1.0 -2.7 hypothetical protein compare
BWI76_RS05915 -1.0 -3.3 helix-turn-helix transcriptional regulator compare
BWI76_RS15705 -1.0 -3.5 putative holin protein compare
BWI76_RS15110 -1.0 -7.5 putative excinuclease ABC subunit A compare
BWI76_RS11150 -1.0 -1.5 membrane protein compare
BWI76_RS12280 -1.0 -2.7 hypothetical protein compare
BWI76_RS06765 -1.0 -2.6 transcriptional regulator compare
BWI76_RS01110 -1.0 -4.5 TDP-fucosamine acetyltransferase compare
BWI76_RS19040 -1.0 -4.9 hypothetical protein compare
BWI76_RS11610 -1.0 -1.7 glutamate dehydrogenase compare
BWI76_RS19685 -1.0 -3.7 lysine transporter compare
BWI76_RS08530 -1.0 -2.4 protein TolA compare
BWI76_RS01085 -1.0 -4.8 polysaccharide chain length modulation protein compare
BWI76_RS22805 -1.0 -5.2 GTP diphosphokinase compare
BWI76_RS16195 -0.9 -1.3 hypothetical protein compare
BWI76_RS16000 -0.9 -1.5 multidrug transporter subunit MdtI compare
BWI76_RS11980 -0.9 -1.2 DeoR family transcriptional regulator compare
BWI76_RS25065 -0.9 -2.1 polyribonucleotide nucleotidyltransferase compare
BWI76_RS27440 -0.9 -2.6 DNA helicase RecG compare
BWI76_RS02725 -0.9 -1.1 HxlR family transcriptional regulator compare
BWI76_RS06530 -0.9 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS17190 -0.9 -1.2 TonB system transport protein TonB compare
BWI76_RS27305 -0.9 -5.0 glycosyl transferase compare
BWI76_RS20130 -0.9 -4.8 NADH-quinone oxidoreductase subunit N compare
BWI76_RS06525 -0.9 -4.2 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS20440 -0.9 -1.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS01925 -0.9 -4.3 aromatic amino acid aminotransferase compare
BWI76_RS23930 -0.9 -4.0 transcriptional regulator ArgP compare
BWI76_RS26635 -0.9 -2.7 hypothetical protein compare
BWI76_RS21345 -0.9 -1.7 sigma-E factor regulatory protein RseB compare
BWI76_RS16895 -0.9 -1.7 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS20925 -0.9 -3.1 peptidase M48 compare
BWI76_RS01275 -0.9 -4.2 LysR family transcriptional regulator compare
BWI76_RS15645 -0.9 -4.4 gp6 compare
BWI76_RS19375 -0.9 -1.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS15685 -0.9 -2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms