Experiment set10IT080 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS22120 +10.5 78.4 glutamate--cysteine ligase compare
BWI76_RS24075 +10.1 51.5 glutathione synthase compare
BWI76_RS07465 +10.1 47.0 TetR family transcriptional regulator compare
BWI76_RS01070 +7.7 32.5 thiol reductase thioredoxin compare
BWI76_RS26685 +7.2 29.5 glutathione-disulfide reductase compare
BWI76_RS00140 +6.9 11.6 phosphate transport system regulator PhoU compare
BWI76_RS27675 +6.7 42.4 EmrB/QacA family drug resistance transporter compare
BWI76_RS20995 +6.2 19.8 RNA degradosome polyphosphate kinase compare
BWI76_RS20640 +5.8 17.8 cysteine synthase A compare
BWI76_RS09645 +4.4 10.9 thioredoxin-disulfide reductase compare
BWI76_RS21235 +3.2 4.3 hypothetical protein compare
BWI76_RS08380 +2.8 1.7 endonuclease VIII compare
BWI76_RS13240 +2.6 3.9 hypothetical protein compare
BWI76_RS23520 +2.6 4.7 hypothetical protein compare
BWI76_RS18870 +2.3 3.2 protein NifZ compare
BWI76_RS06635 +2.3 1.3 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS16455 +2.2 3.5 superoxide dismutase compare
BWI76_RS06745 +2.2 2.1 N-acetyltransferase GCN5 compare
BWI76_RS17665 +2.1 5.9 proteasome-type protease compare
BWI76_RS20380 +2.1 2.5 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS22090 +2.1 3.2 transcriptional regulator compare
BWI76_RS22085 +2.1 5.0 L-valine transporter subunit YgaH compare
BWI76_RS26095 +2.0 3.0 shikimate kinase compare
BWI76_RS06785 +1.8 6.1 DNA-binding transcriptional repressor AcrR compare
BWI76_RS10305 +1.8 5.0 transposase compare
BWI76_RS17910 +1.8 5.6 hypothetical protein compare
BWI76_RS17915 +1.8 7.7 membrane protein compare
BWI76_RS12145 +1.8 2.7 hypothetical protein compare
BWI76_RS10375 +1.8 1.9 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS22815 +1.8 11.3 hybrid sensor histidine kinase/response regulator compare
BWI76_RS11675 +1.7 1.8 arginine N-succinyltransferase compare
BWI76_RS05950 +1.7 3.0 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS16655 +1.7 1.7 CatA-like O-acetyltransferase compare
BWI76_RS09315 +1.6 1.5 hypothetical protein compare
BWI76_RS15150 +1.6 4.9 outer membrane efflux protein compare
BWI76_RS19025 +1.6 6.8 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS22930 +1.6 2.6 L-fuculokinase (EC 2.7.1.51) (from data) compare
BWI76_RS16805 +1.6 2.4 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS21685 +1.5 2.7 hypothetical protein compare
BWI76_RS23560 +1.5 1.2 hypothetical protein compare
BWI76_RS05870 +1.5 1.8 ABC transporter compare
BWI76_RS16275 +1.5 2.1 fumarate hydratase FumA compare
BWI76_RS06945 +1.5 1.5 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
BWI76_RS25380 +1.5 3.9 oxaloacetate decarboxylase subunit beta compare
BWI76_RS03040 +1.5 1.3 leucyl aminopeptidase compare
BWI76_RS11835 +1.5 1.5 putative regulatory protein MarR compare
BWI76_RS13805 +1.5 2.0 inorganic diphosphatase compare
BWI76_RS19055 +1.5 5.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BWI76_RS14835 +1.4 1.7 hypothetical protein compare
BWI76_RS24060 +1.4 2.3 SprT family protein compare
BWI76_RS24900 +1.4 1.6 DeoR family transcriptional regulator compare
BWI76_RS13730 +1.4 2.4 hypothetical protein compare
BWI76_RS27200 +1.4 1.5 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
BWI76_RS24035 +1.4 2.3 hypothetical protein compare
BWI76_RS11700 +1.4 1.9 hypothetical protein compare
BWI76_RS14505 +1.4 1.6 salicylate synthase Irp9 compare
BWI76_RS17110 +1.4 2.5 vitamin B12 ABC transporter permease BtuC compare
BWI76_RS16840 +1.4 1.4 ABC transporter compare
BWI76_RS01350 +1.3 1.5 NAD(P)H-flavin reductase compare
BWI76_RS14775 +1.3 2.1 creatinine amidohydrolase compare
BWI76_RS08835 +1.3 1.7 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS16090 +1.3 3.0 two-component system response regulator DcuR compare
BWI76_RS00640 +1.3 1.5 L-rhamnose mutarotase compare
BWI76_RS15920 +1.3 1.7 hypothetical protein compare
BWI76_RS17080 +1.3 5.8 hypothetical protein compare
BWI76_RS17895 +1.3 1.0 PTS mannose/fructose/sorbose transporter subunit IIC compare
BWI76_RS08315 +1.3 1.8 K+-transporting ATPase subunit B compare
BWI76_RS11445 +1.3 1.7 hypothetical protein compare
BWI76_RS06595 +1.3 2.5 hypothetical protein compare
BWI76_RS13175 +1.3 2.2 NodT family RND efflux system outer membrane lipoprotein compare
BWI76_RS04560 +1.3 4.4 holo-ACP synthase CitX compare
BWI76_RS16870 +1.3 1.7 LysR family transcriptional regulator compare
BWI76_RS11230 +1.2 1.1 NAD-dependent deacylase compare
BWI76_RS08405 +1.2 1.9 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS05465 +1.2 1.1 amidohydrolase compare
BWI76_RS12480 +1.2 1.7 TIGR01620 family protein compare
BWI76_RS26580 +1.2 3.4 universal stress protein A compare
BWI76_RS20390 +1.2 3.0 erythronate-4-phosphate dehydrogenase compare
BWI76_RS05440 +1.2 5.4 hydroxyacylglutathione hydrolase compare
BWI76_RS06805 +1.2 1.8 primosomal replication protein N'' compare
BWI76_RS18065 +1.2 2.1 DNA polymerase III subunit theta compare
BWI76_RS18335 +1.2 6.8 DNA-binding response regulator compare
BWI76_RS21395 +1.2 1.4 DTW domain-containing protein compare
BWI76_RS07970 +1.2 0.8 hypothetical protein compare
BWI76_RS04850 +1.2 2.4 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS17565 +1.2 1.2 hypothetical protein compare
BWI76_RS16375 +1.2 2.0 electron transport complex subunit G compare
BWI76_RS13945 +1.2 1.3 lysine exporter protein LysE/YggA compare
BWI76_RS06405 +1.2 1.4 2-dehydropantoate 2-reductase compare
BWI76_RS05880 +1.2 1.3 AraC-type DNA-binding domain-containing protein compare
BWI76_RS12815 +1.2 1.6 transcriptional regulator FeaR compare
BWI76_RS04705 +1.2 4.6 DNA-binding transcriptional regulator FruR compare
BWI76_RS23955 +1.2 1.4 LysR family transcriptional regulator compare
BWI76_RS15200 +1.1 1.8 glutaminase compare
BWI76_RS10245 +1.1 0.8 aspartate aminotransferase compare
BWI76_RS21015 +1.1 2.3 LysR family transcriptional regulator compare
BWI76_RS01380 +1.1 2.6 YigZ family protein compare
BWI76_RS17975 +1.1 2.9 tail-specific protease compare
BWI76_RS19330 +1.1 0.9 HAD family hydrolase compare
BWI76_RS10040 +1.1 2.1 heat-shock protein HspQ compare
BWI76_RS16955 +1.1 1.4 hypothetical protein compare
BWI76_RS14055 +1.1 1.2 LacI family transcriptional regulator compare
BWI76_RS02525 +1.1 1.8 DNA mismatch repair protein MutL compare
BWI76_RS05075 +1.1 1.2 type II secretion system protein GspG compare
BWI76_RS11920 +1.1 3.3 hypothetical protein compare
BWI76_RS08310 +1.1 2.1 potassium-transporting ATPase subunit C compare
BWI76_RS13955 +1.1 2.0 hypothetical protein compare
BWI76_RS17970 +1.1 2.3 zinc metalloprotease HtpX compare
BWI76_RS21945 +1.1 1.1 LysR family transcriptional regulator compare
BWI76_RS18660 +1.1 3.3 hypothetical protein compare
BWI76_RS20460 +1.1 1.3 acetyl-CoA C-acyltransferase FadI compare
BWI76_RS00865 +1.1 2.9 DNA-binding transcriptional regulator OxyR compare
BWI76_RS04400 +1.1 3.1 alanyl-tRNA synthetase compare
BWI76_RS12485 +1.1 1.7 TyrR family transcriptional regulator compare
BWI76_RS25375 +1.1 2.0 hypothetical protein compare
BWI76_RS16815 +1.0 1.3 periplasmic binding protein compare
BWI76_RS01190 +1.0 2.3 iron donor protein CyaY compare
BWI76_RS14925 +1.0 1.8 ABC transporter substrate-binding protein compare
BWI76_RS11560 +1.0 3.1 oxidoreductase compare
BWI76_RS18055 +1.0 1.4 copper resistance protein D compare
BWI76_RS24335 +1.0 1.2 two-component system response regulator QseB compare
BWI76_RS00880 +1.0 2.1 membrane protein compare
BWI76_RS09530 +1.0 0.9 hypothetical protein compare
BWI76_RS15190 +1.0 4.7 GGDEF domain-containing protein compare
BWI76_RS23345 +1.0 1.5 glycoside hydrolase compare
BWI76_RS24345 +1.0 1.0 NADPH quinone reductase MdaB compare
BWI76_RS01890 +1.0 3.0 transcriptional regulator Zur compare
BWI76_RS14895 +1.0 1.1 3-oxoacyl-ACP reductase compare
BWI76_RS22130 +1.0 1.3 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS01835 +1.0 1.6 chemotaxis protein CheW compare
BWI76_RS12575 +1.0 2.2 FAD-dependent oxidoreductase compare
BWI76_RS13400 +1.0 1.4 GntR family transcriptional regulator compare
BWI76_RS00450 +1.0 1.7 formate dehydrogenase accessory protein FdhE compare
BWI76_RS12550 +1.0 2.2 hypothetical protein compare
BWI76_RS00740 +1.0 1.8 ribonuclease E activity regulator RraA compare
BWI76_RS16785 +1.0 3.1 peptidase M20 compare
BWI76_RS11250 +1.0 1.7 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS05520 +1.0 2.1 hypothetical protein compare
BWI76_RS04585 +1.0 2.9 L-arabinose isomerase compare
BWI76_RS13965 +1.0 1.5 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS26185 +1.0 1.4 thiosulfate sulfurtransferase compare
BWI76_RS24370 +1.0 1.3 hypothetical protein compare
BWI76_RS10955 +1.0 1.0 hypothetical protein compare
BWI76_RS19050 +1.0 4.6 NAD(P)-dependent oxidoreductase compare
BWI76_RS21955 +1.0 2.4 transferase compare
BWI76_RS18595 +1.0 2.2 hypothetical protein compare
BWI76_RS14135 +0.9 1.7 malto-oligosyltrehalose synthase compare
BWI76_RS17555 +0.9 1.7 permease compare
BWI76_RS06370 +0.9 1.9 phosphatidylglycerophosphatase A compare
BWI76_RS02550 +0.9 1.5 protease modulator HflC compare
BWI76_RS25920 +0.9 1.4 peptidylprolyl isomerase compare
BWI76_RS01590 +0.9 2.6 hypothetical protein compare
BWI76_RS17660 +0.9 2.8 AraC/XylS familytranscription regulator compare
BWI76_RS13635 +0.9 1.7 extracellular solute-binding protein compare
BWI76_RS09100 +0.9 4.2 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS22325 +0.9 1.4 hydrogenase 3 membrane subunit compare
BWI76_RS18410 +0.9 2.2 drug/metabolite exporter YedA compare
BWI76_RS23295 +0.9 2.4 tellurium resistance protein TerC compare
BWI76_RS01780 +0.9 3.8 SPFH domain / Band 7 family protein compare
BWI76_RS13095 +0.9 0.9 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS04595 +0.9 2.4 DNA-binding transcriptional regulator AraC compare
BWI76_RS03175 +0.9 1.8 hypothetical protein compare
BWI76_RS15965 +0.9 1.9 MFS transporter compare
BWI76_RS13890 +0.9 1.0 LysR family transcriptional regulator compare
BWI76_RS01580 +0.9 1.9 hypothetical protein compare
BWI76_RS14935 +0.9 1.2 NIPSNAP family containing protein compare
BWI76_RS12570 +0.9 2.3 DUF1365 domain-containing protein compare
BWI76_RS03060 +0.9 2.2 ATP-binding protein compare
BWI76_RS24465 +0.9 1.7 adenylate cyclase compare
BWI76_RS21410 +0.9 1.9 lipoprotein compare
BWI76_RS23470 +0.9 5.5 hypothetical protein compare
BWI76_RS24525 +0.9 2.1 urease accessory protein UreG compare
BWI76_RS04045 +0.9 3.3 PTS system lactose/cellobiose-specific transporter subunit IIC compare
BWI76_RS14750 +0.9 1.7 transcriptional regulator compare
BWI76_RS07955 +0.9 2.8 nucleoside diphosphate kinase regulator compare
BWI76_RS23130 +0.9 1.7 diol dehydratase reactivase subunit alpha compare
BWI76_RS08945 +0.9 2.5 catecholate siderophore receptor Fiu compare
BWI76_RS24635 +0.8 2.0 autoinducer-2 (AI-2) modifying protein LsrG compare
BWI76_RS15760 +0.8 1.1 hypothetical protein compare
BWI76_RS18025 +0.8 1.7 spore coat U domain-containing protein compare
BWI76_RS22695 +0.8 2.0 sulfate adenylyltransferase compare
BWI76_RS24770 +0.8 1.6 hypothetical protein compare
BWI76_RS06340 +0.8 0.7 hypothetical protein compare
BWI76_RS04615 +0.8 1.4 thiamine transporter substrate binding subunit compare
BWI76_RS02195 +0.8 2.3 alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase compare
BWI76_RS17045 +0.8 1.0 hypothetical protein compare
BWI76_RS18735 +0.8 3.0 tautomerase family protein compare
BWI76_RS02220 +0.8 1.1 carbon-phosphorus lyase subunit PhnH compare
BWI76_RS13460 +0.8 2.1 ABC transporter substrate-binding protein compare
BWI76_RS10495 +0.8 3.1 LysR family transcriptional regulator compare
BWI76_RS04525 +0.8 0.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS24180 +0.8 1.1 hypothetical protein compare
BWI76_RS16585 +0.8 1.9 trehalose synthase compare
BWI76_RS19100 +0.8 1.8 putative acid phosphatase compare
BWI76_RS10310 +0.8 1.6 DNA-binding transcriptional regulator RamA compare
BWI76_RS22125 +0.8 1.4 membrane protein compare
BWI76_RS02090 +0.8 1.6 membrane protein compare
BWI76_RS20530 +0.8 1.6 hypothetical protein compare
BWI76_RS03105 +0.8 0.9 myo-inosose-2 dehydratase compare
BWI76_RS25600 +0.8 0.7 tRNA-Thr compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms