Experiment set10IT080 for Cupriavidus basilensis FW507-4G11

Compare to:

Azelaic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS17355 +1.5 1.1 hypothetical protein compare
RR42_RS06710 +1.5 2.8 hypothetical protein compare
RR42_RS13620 +1.5 1.5 ferredoxin compare
RR42_RS32740 +1.4 1.6 enoyl-CoA hydratase compare
RR42_RS30320 +1.4 2.0 hypothetical protein compare
RR42_RS30410 +1.2 1.3 hypothetical protein compare
RR42_RS34060 +1.2 2.7 alpha/beta hydrolase compare
RR42_RS23565 +1.2 1.0 flagellar motor switch protein G compare
RR42_RS32445 +1.2 2.9 shikimate dehydrogenase compare
RR42_RS19750 +1.2 1.0 MBL fold metallo-hydrolase compare
RR42_RS01795 +1.2 8.5 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS08330 +1.1 1.6 hypothetical protein compare
RR42_RS06020 +1.1 1.3 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS09470 +1.1 1.7 2-dehydro-3-deoxygluconokinase compare
RR42_RS34395 +1.1 1.6 hypothetical protein compare
RR42_RS12240 +1.1 1.7 hypothetical protein compare
RR42_RS12305 +1.1 1.0 hypothetical protein compare
RR42_RS09375 +1.1 1.3 taurine dioxygenase compare
RR42_RS18380 +1.1 2.7 hypothetical protein compare
RR42_RS21720 +1.0 1.9 acetoin catabolism protein X compare
RR42_RS08945 +1.0 1.0 hypothetical protein compare
RR42_RS23230 +1.0 1.8 glycerate kinase compare
RR42_RS15180 +1.0 2.0 hypothetical protein compare
RR42_RS21040 +1.0 0.7 hypothetical protein compare
RR42_RS07410 +1.0 4.4 peptidase S11 compare
RR42_RS14045 +1.0 2.0 membrane protein compare
RR42_RS27790 +1.0 2.1 LuxR family transcriptional regulator compare
RR42_RS08805 +1.0 2.3 nitrate reductase compare
RR42_RS24520 +1.0 3.2 hypothetical protein compare
RR42_RS12085 +1.0 1.6 glyoxalase compare
RR42_RS00370 +1.0 2.6 Asp/Glu/hydantoin racemase compare
RR42_RS14480 +1.0 3.5 hypothetical protein compare
RR42_RS14520 +0.9 1.8 mobilization protein compare
RR42_RS21375 +0.9 3.3 succinate-semialdehyde dehydrogenase compare
RR42_RS12155 +0.9 1.9 molecular chaperone compare
RR42_RS30735 +0.9 1.4 tRNA-Met compare
RR42_RS12580 +0.9 2.1 phosphate transport regulator compare
RR42_RS23140 +0.9 1.2 peptidylprolyl isomerase compare
RR42_RS05895 +0.9 2.5 rhombosortase compare
RR42_RS30765 +0.9 1.2 tRNA-Arg compare
RR42_RS32805 +0.9 1.3 damage-inducible protein compare
RR42_RS31900 +0.9 1.4 short-chain dehydrogenase compare
RR42_RS20965 +0.9 2.3 transferase compare
RR42_RS20640 +0.9 2.4 TetR family transcriptional regulator compare
RR42_RS27285 +0.9 2.3 hypothetical protein compare
RR42_RS15450 +0.9 2.3 Tol system periplasmic component YbgF compare
RR42_RS36550 +0.9 2.6 3-hydroxyacyl-CoA dehydrogenase compare
RR42_RS00625 +0.9 1.4 hypothetical protein compare
RR42_RS34945 +0.9 2.5 bb3-type cytochrome oxidase subunit III compare
RR42_RS05430 +0.9 1.7 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS15160 +0.8 3.1 membrane protein compare
RR42_RS33690 +0.8 1.6 phosphate acetyltransferase compare
RR42_RS07240 +0.8 1.4 hypothetical protein compare
RR42_RS23690 +0.8 1.6 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
RR42_RS09565 +0.8 2.6 hypothetical protein compare
RR42_RS28200 +0.8 2.2 membrane protein compare
RR42_RS13305 +0.8 1.4 hypothetical protein compare
RR42_RS28695 +0.8 1.4 hypothetical protein compare
RR42_RS10950 +0.8 1.7 GCN5 family acetyltransferase compare
RR42_RS07940 +0.8 1.8 ABC transporter permease compare
RR42_RS17035 +0.8 3.3 hypothetical protein compare
RR42_RS22910 +0.8 2.9 nitrate ABC transporter ATPase compare
RR42_RS19555 +0.8 1.3 hypothetical protein compare
RR42_RS35115 +0.8 1.9 riboflavin synthase subunit beta compare
RR42_RS13640 +0.8 1.7 MarR family transcriptional regulator compare
RR42_RS27400 +0.8 3.0 membrane protein compare
RR42_RS26590 +0.8 1.1 hypothetical protein compare
RR42_RS28085 +0.8 1.6 alkylphosphonate utilization protein PhnG compare
RR42_RS25000 +0.8 2.5 iditol 2-dehydrogenase compare
RR42_RS16640 +0.7 1.2 LysR family transcriptional regulator compare
RR42_RS06120 +0.7 1.8 transcriptional regulator compare
RR42_RS01195 +0.7 1.9 excinuclease ATPase compare
RR42_RS22915 +0.7 3.1 ABC transporter permease compare
RR42_RS20810 +0.7 1.6 hypothetical protein compare
RR42_RS33145 +0.7 1.2 hypothetical protein compare
RR42_RS17635 +0.7 1.6 magnesium transporter CorA compare
RR42_RS01655 +0.7 2.6 AMP-dependent synthetase compare
RR42_RS10855 +0.7 0.8 diguanylate phosphodiesterase compare
RR42_RS02270 +0.7 1.0 hypothetical protein compare
RR42_RS18475 +0.7 2.2 membrane protein compare
RR42_RS33485 +0.7 2.7 Fe-S oxidoreductase compare
RR42_RS07630 +0.7 1.1 methyltransferase type 12 compare
RR42_RS28190 +0.7 2.5 MerR family transcriptional regulator compare
RR42_RS15640 +0.7 0.7 hypothetical protein compare
RR42_RS23910 +0.7 1.3 hypothetical protein compare
RR42_RS23365 +0.7 2.0 flagellar biosynthesis protein FliO compare
RR42_RS23920 +0.7 1.6 hypothetical protein compare
RR42_RS18425 +0.7 0.9 hypothetical protein compare
RR42_RS04770 +0.7 0.7 methylglyoxal synthase compare
RR42_RS35725 +0.7 1.2 flagellar biosynthesis protein FlgB compare
RR42_RS24500 +0.7 2.1 hypothetical protein compare
RR42_RS03430 +0.7 1.8 SAM-dependent methyltransferase compare
RR42_RS06655 +0.7 2.2 hypothetical protein compare
RR42_RS28425 +0.7 1.7 3-hydroxybutyryl-CoA dehydratase compare
RR42_RS01785 +0.7 1.6 PTS fructose transporter subunit IIA compare
RR42_RS25965 +0.7 2.0 LuxR family transcriptional regulator compare
RR42_RS22165 +0.7 0.6 hypothetical protein compare
RR42_RS02085 +0.7 2.9 RNA polymerase subunit sigma-54 compare
RR42_RS26425 +0.7 2.6 biphenyl 2,3-dioxygenase compare
RR42_RS02420 +0.7 0.5 SAM-dependent methyltransferase compare
RR42_RS28615 +0.7 1.5 ABC transporter substrate-binding protein compare
RR42_RS31775 +0.7 1.9 HxlR family transcriptional regulator compare
RR42_RS16565 +0.6 1.7 hypothetical protein compare
RR42_RS23985 +0.6 2.2 hypothetical protein compare
RR42_RS15120 +0.6 1.0 4-oxalocrotonate tautomerase compare
RR42_RS27245 +0.6 2.2 hypothetical protein compare
RR42_RS32800 +0.6 2.8 nucleotidyltransferase compare
RR42_RS30285 +0.6 1.6 amidohydrolase compare
RR42_RS13455 +0.6 2.2 phosphate ABC transporter ATP-binding protein compare
RR42_RS26365 +0.6 2.0 dienelactone hydrolase compare
RR42_RS23650 +0.6 1.4 flagellar protein compare
RR42_RS26265 +0.6 0.7 hypothetical protein compare
RR42_RS24880 +0.6 1.7 hypothetical protein compare
RR42_RS15110 +0.6 2.0 NADH pyrophosphatase compare
RR42_RS27395 +0.6 2.2 GntR family transcriptional regulator compare
RR42_RS04735 +0.6 1.0 hypothetical protein compare
RR42_RS29365 +0.6 1.4 ArsR family transcriptional regulator compare
RR42_RS18485 +0.6 0.7 glutaredoxin compare
RR42_RS07515 +0.6 3.1 transcriptional regulator compare
RR42_RS02685 +0.6 2.0 phosphoglycerate mutase compare
RR42_RS14905 +0.6 1.5 hypothetical protein compare
RR42_RS32655 +0.6 2.1 catechol 2,3-dioxygenase compare
RR42_RS04110 +0.6 2.0 pilus assembly protein TadG compare
RR42_RS13935 +0.6 1.2 hemin transporter compare
RR42_RS22590 +0.6 0.8 organic hydroperoxide resistance protein compare
RR42_RS35715 +0.6 1.8 flagellar basal body rod modification protein FlgD compare
RR42_RS25715 +0.6 1.8 hypothetical protein compare
RR42_RS35980 +0.6 1.9 membrane protein compare
RR42_RS31790 +0.6 0.6 nitrite reductase compare
RR42_RS13595 +0.6 1.6 hypothetical protein compare
RR42_RS22070 +0.6 2.1 type IV secretion protein Rhs compare
RR42_RS24820 +0.6 1.2 hypothetical protein compare
RR42_RS10400 +0.6 1.3 hypothetical protein compare
RR42_RS34175 +0.6 1.3 enoyl-CoA hydratase compare
RR42_RS28735 +0.6 2.1 hemolysin III compare
RR42_RS26435 +0.6 1.6 ferredoxin compare
RR42_RS15610 +0.6 1.7 cupin compare
RR42_RS17595 +0.6 1.4 hypothetical protein compare
RR42_RS34460 +0.6 2.3 GDP-L-fucose synthase compare
RR42_RS02470 +0.6 1.4 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS22935 +0.6 2.3 metal transporter compare
RR42_RS17590 +0.6 1.1 16S rRNA methyltransferase compare
RR42_RS07995 +0.6 1.0 hypothetical protein compare
RR42_RS13055 +0.6 3.6 NAD-dependent protein deacylase compare
RR42_RS23125 +0.6 1.0 hypothetical protein compare
RR42_RS03530 +0.6 0.6 hypothetical protein compare
RR42_RS11805 +0.6 1.3 ribonuclease HII compare
RR42_RS31820 +0.6 1.7 short-chain dehydrogenase compare
RR42_RS18310 +0.6 0.8 indole-3-glycerol-phosphate synthase compare
RR42_RS00285 +0.6 2.2 thiamine biosynthesis protein ThiS compare
RR42_RS08505 +0.6 1.9 DNA-binding protein compare
RR42_RS13850 +0.6 1.5 hypothetical protein compare
RR42_RS18390 +0.6 1.9 hypothetical protein compare
RR42_RS11985 +0.6 1.3 glutathione ABC transporter permease compare
RR42_RS30020 +0.6 3.4 hypothetical protein compare
RR42_RS30965 +0.6 2.3 hypothetical protein compare
RR42_RS12275 +0.6 1.2 transporter compare
RR42_RS24665 +0.6 1.4 hypothetical protein compare
RR42_RS32665 +0.6 2.4 phenol hydroxylase compare
RR42_RS22030 +0.6 1.5 hypothetical protein compare
RR42_RS15525 +0.6 0.6 hypothetical protein compare
RR42_RS33660 +0.6 1.1 dihydrofolate reductase compare
RR42_RS20320 +0.6 1.6 ornithine cyclodeaminase compare
RR42_RS37160 +0.6 1.7 DNA-binding protein compare
RR42_RS22130 +0.6 2.9 amidase compare
RR42_RS09595 +0.6 1.9 histidine kinase compare
RR42_RS03050 +0.6 1.9 energy transducer TonB compare
RR42_RS33175 +0.6 3.0 membrane protein compare
RR42_RS31995 +0.6 1.8 flavin reductase compare
RR42_RS25510 +0.6 1.0 short-chain dehydrogenase compare
RR42_RS32235 +0.6 2.6 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS32775 +0.6 1.0 hypothetical protein compare
RR42_RS22135 +0.6 1.0 cytochrome C compare
RR42_RS32765 +0.6 1.8 hypothetical protein compare
RR42_RS13610 +0.6 2.2 IclR family transcriptional regulator compare
RR42_RS19690 +0.6 1.7 Tat pathway signal protein compare
RR42_RS22580 +0.6 2.5 hypothetical protein compare
RR42_RS31735 +0.6 1.6 ABC transporter ATP-binding protein compare
RR42_RS08295 +0.5 1.8 hypothetical protein compare
RR42_RS36715 +0.5 1.7 alanine acetyltransferase compare
RR42_RS11655 +0.5 0.8 heat-shock protein Hsp20 compare
RR42_RS17625 +0.5 2.1 damage-inducible protein CinA compare
RR42_RS35805 +0.5 1.2 chemotaxis protein CheA compare
RR42_RS01630 +0.5 0.4 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS02790 +0.5 1.8 tryptophanyl-tRNA synthetase compare
RR42_RS22440 +0.5 2.7 ADP-glucose pyrophosphorylase compare
RR42_RS06510 +0.5 1.1 hypothetical protein compare
RR42_RS33675 +0.5 2.8 nitrate ABC transporter ATP-binding protein compare
RR42_RS02925 +0.5 2.2 membrane protein compare
RR42_RS09635 +0.5 1.6 membrane protein compare
RR42_RS34785 +0.5 2.4 ABC transporter permease compare
RR42_RS32000 +0.5 3.2 3-oxosteroid 1-dehydrogenase compare
RR42_RS23845 +0.5 0.8 hypothetical protein compare
RR42_RS22045 +0.5 2.2 flagellar motor protein MotB compare
RR42_RS00655 +0.5 1.4 membrane protein compare
RR42_RS29190 +0.5 2.5 isomerase compare
RR42_RS35815 +0.5 3.0 flagellar motor protein MotA compare
RR42_RS33695 +0.5 1.5 membrane protein compare
RR42_RS06760 +0.5 2.7 hypothetical protein compare
RR42_RS13675 +0.5 2.0 short-chain dehydrogenase compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source Azelaic acid across organisms