Experiment set10IT078 for Cupriavidus basilensis FW507-4G11

Compare to:

Pimelic acid carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -7.5 -5.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS01385 -6.2 -4.3 5,10-methylenetetrahydrofolate reductase compare
RR42_RS12175 -6.0 -8.3 malate synthase compare
RR42_RS07425 -6.0 -5.9 IclR family transcriptional regulator compare
RR42_RS06485 -6.0 -4.1 chorismate synthase compare
RR42_RS16250 -5.8 -4.0 sulfate adenylyltransferase compare
RR42_RS19005 -5.8 -4.0 3-dehydroquinate synthase compare
RR42_RS01290 -5.6 -10.1 thiamine biosynthesis protein ThiC compare
RR42_RS16255 -5.6 -5.4 sulfate adenylyltransferase compare
RR42_RS16275 -5.5 -3.8 membrane protein compare
RR42_RS30655 -5.4 -5.3 LysR family transcriptional regulator compare
RR42_RS24605 -5.4 -10.1 TetR family transcriptional regulator compare
RR42_RS14390 -5.3 -3.6 3-isopropylmalate dehydratase compare
RR42_RS00380 -5.2 -11.7 GntR family transcriptional regulator compare
RR42_RS15400 -5.1 -7.5 acyl-CoA dehydrogenase compare
RR42_RS00875 -5.1 -12.8 isocitrate dehydrogenase compare
RR42_RS18305 -5.0 -3.4 anthranilate phosphoribosyltransferase compare
RR42_RS06395 -4.9 -11.8 TetR family transcriptional regulator compare
RR42_RS04475 -4.9 -8.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS12040 -4.8 -16.8 MFS transporter compare
RR42_RS16270 -4.8 -7.3 sulfite reductase compare
RR42_RS14400 -4.8 -3.3 isopropylmalate isomerase compare
RR42_RS33575 -4.8 -3.3 hypothetical protein compare
RR42_RS20375 -4.7 -4.6 transcriptional regulator compare
RR42_RS17105 -4.6 -12.5 Clp protease ClpX compare
RR42_RS01160 -4.5 -10.6 homoserine O-acetyltransferase compare
RR42_RS12925 -4.4 -3.0 ATPase compare
RR42_RS33260 -4.2 -9.4 multidrug MFS transporter compare
RR42_RS14965 -4.2 -5.0 hypothetical protein compare
RR42_RS02060 -4.1 -8.2 nucleotide-binding protein compare
RR42_RS30660 -4.1 -8.5 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS18815 -4.0 -5.5 cytochrome C compare
RR42_RS16280 -3.9 -6.7 transcriptional regulator compare
RR42_RS02320 -3.8 -6.8 trehalose phosphatase compare
RR42_RS14320 -3.7 -5.3 O-succinylhomoserine sulfhydrylase compare
RR42_RS33255 -3.7 -5.2 protein-tyrosine phosphatase compare
RR42_RS05860 -3.7 -3.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS18820 -3.7 -5.5 cytochrome B compare
RR42_RS14365 -3.6 -2.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS21820 -3.6 -7.3 GntR family transcriptional regulator compare
RR42_RS16245 -3.6 -4.9 uroporphyrin-III methyltransferase compare
RR42_RS07555 -3.6 -2.4 potassium transporter Kup compare
RR42_RS14385 -3.5 -5.9 3-isopropylmalate dehydrogenase compare
RR42_RS18295 -3.5 -10.4 anthranilate synthase component I compare
RR42_RS17930 -3.4 -4.0 RNA pyrophosphohydrolase compare
RR42_RS19090 -3.4 -2.3 cytochrome C compare
RR42_RS29255 -3.4 -9.0 GTP cyclohydrolase compare
RR42_RS18535 -3.3 -10.2 ABC transporter substrate-binding protein compare
RR42_RS18300 -3.3 -3.2 anthranilate synthase subunit II compare
RR42_RS36695 -3.3 -10.7 heavy metal resistance protein CzcA compare
RR42_RS18825 -3.3 -2.4 ubiquinol-cytochrome C reductase compare
RR42_RS14360 -3.3 -1.9 tryptophan synthase subunit alpha compare
RR42_RS17645 -3.3 -5.8 shikimate dehydrogenase compare
RR42_RS12050 -3.2 -8.9 DNA polymerase compare
RR42_RS17620 -3.0 -4.7 phosphatidylglycerophosphatase compare
RR42_RS02810 -2.8 -3.1 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS33250 -2.8 -7.8 tyrosine protein kinase compare
RR42_RS33650 -2.8 -3.4 IclR family transcriptional regulator compare
RR42_RS26900 -2.8 -1.9 enoyl-CoA hydratase compare
RR42_RS12550 -2.7 -5.9 hypothetical protein compare
RR42_RS15455 -2.7 -5.4 membrane protein compare
RR42_RS15470 -2.7 -1.5 biopolymer transporter ExbD compare
RR42_RS02750 -2.7 -7.7 mannose-1-phosphate guanylyltransferase compare
RR42_RS16240 -2.6 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS20380 -2.6 -6.1 histidine kinase compare
RR42_RS28290 -2.6 -4.7 DNA-binding protein compare
RR42_RS33240 -2.6 -13.6 GDP-L-fucose synthase compare
RR42_RS36700 -2.5 -5.7 multidrug transporter compare
RR42_RS18850 -2.4 -1.6 preprotein translocase subunit TatC compare
RR42_RS01780 -2.4 -7.4 glutathione synthetase compare
RR42_RS31385 -2.4 -7.0 GntR family transcriptional regulator compare
RR42_RS06095 -2.4 -3.7 hypothetical protein compare
RR42_RS18970 -2.4 -13.9 toluene ABC transporter ATP-binding protein compare
RR42_RS18965 -2.4 -11.4 ABC transporter permease compare
RR42_RS28885 -2.3 -5.2 membrane protein compare
RR42_RS01845 -2.3 -2.1 glycerol-3-phosphate dehydrogenase compare
RR42_RS18930 -2.3 -5.1 BolA family transcriptional regulator compare
RR42_RS26935 -2.3 -4.4 farnesyl-diphosphate farnesyltransferase compare
RR42_RS15035 -2.3 -3.7 ZIP zinc transporter compare
RR42_RS03085 -2.3 -1.3 RecX family transcriptional regulator compare
RR42_RS11795 -2.3 -1.6 PEP synthetase regulatory protein compare
RR42_RS33245 -2.3 -8.9 mannose-1-phosphate guanyltransferase compare
RR42_RS18945 -2.3 -4.7 toluene tolerance protein compare
RR42_RS03385 -2.2 -5.7 sugar kinase compare
RR42_RS04535 -2.2 -2.5 cysteine synthase compare
RR42_RS18855 -2.2 -1.5 preprotein translocase compare
RR42_RS27735 -2.2 -11.4 GntR family transcriptional regulator compare
RR42_RS17885 -2.2 -4.6 ABC transporter permease compare
RR42_RS17720 -2.1 -2.0 sugar kinase compare
RR42_RS33235 -2.1 -8.4 GDP-mannose 4,6-dehydratase compare
RR42_RS09100 -2.1 -13.1 transcriptional regulator compare
RR42_RS18960 -2.1 -11.3 ABC transporter substrate-binding protein compare
RR42_RS11145 -2.1 -8.8 ABC transporter permease compare
RR42_RS25785 -2.1 -3.0 TetR family transcriptional regulator compare
RR42_RS05990 -2.1 -6.6 aromatic amino acid aminotransferase compare
RR42_RS12185 -2.1 -1.9 LysR family transcriptional regulator compare
RR42_RS19010 -2.0 -4.3 shikimate kinase compare
RR42_RS33210 -2.0 -7.0 teichoic acid biosynthesis protein compare
RR42_RS04460 -2.0 -4.0 chorismate mutase compare
RR42_RS01920 -2.0 -3.9 protoheme IX farnesyltransferase compare
RR42_RS37400 -2.0 -0.8 6-phosphogluconolactonase compare
RR42_RS06860 -2.0 -1.3 hypothetical protein compare
RR42_RS16260 -2.0 -1.2 phosphoadenosine phosphosulfate reductase compare
RR42_RS04700 -2.0 -1.5 ribonuclease G compare
RR42_RS28935 -2.0 -8.3 hypothetical protein compare
RR42_RS20205 -2.0 -2.3 chromosome partitioning protein compare
RR42_RS14055 -1.9 -3.1 elongation factor 4 compare
RR42_RS15745 -1.9 -6.0 group1 glycosyl transferase compare
RR42_RS23685 -1.9 -7.9 transcriptional regulator compare
RR42_RS26905 -1.9 -4.9 methylcrotonoyl-CoA carboxylase compare
RR42_RS01830 -1.9 -4.6 sulfurtransferase compare
RR42_RS15785 -1.9 -8.3 glycosyl transferase family 28 compare
RR42_RS08660 -1.9 -9.9 hypothetical protein compare
RR42_RS02775 -1.9 -2.4 molecular chaperone SurA compare
RR42_RS04895 -1.8 -7.9 serine/threonine protein phosphatase compare
RR42_RS04470 -1.8 -4.3 prephenate dehydrogenase compare
RR42_RS01185 -1.8 -11.7 muropeptide transporter compare
RR42_RS07365 -1.8 -3.0 pyruvate dehydrogenase compare
RR42_RS19065 -1.8 -5.4 transcriptional regulator compare
RR42_RS19410 -1.8 -4.4 GntR family transcriptional regulator compare
RR42_RS13195 -1.8 -7.3 protein-L-isoaspartate O-methyltransferase compare
RR42_RS21595 -1.8 -5.4 IclR family transcriptional regulator compare
RR42_RS11150 -1.8 -10.9 branched-chain amino acid ABC transporter substrate-binding protein conserved
RR42_RS18540 -1.8 -7.0 long-chain fatty acid--CoA ligase compare
RR42_RS00115 -1.8 -2.0 hypothetical protein compare
RR42_RS17055 -1.7 -5.6 LuxR family transcriptional regulator compare
RR42_RS11140 -1.7 -8.9 ABC transporter permease conserved
RR42_RS17730 -1.7 -3.5 hypothetical protein compare
RR42_RS14080 -1.7 -6.1 RNA polymerase sigma factor RpoE compare
RR42_RS04145 -1.7 -1.3 peptidase A24 compare
RR42_RS17060 -1.7 -10.0 histidine kinase compare
RR42_RS07385 -1.7 -2.0 Phasin (PHA-granule associated protein) compare
RR42_RS15895 -1.7 -7.7 uroporphyrinogen III methyltransferase compare
RR42_RS25200 -1.7 -4.4 TetR family transcriptional regulator compare
RR42_RS00715 -1.7 -1.6 ferritin compare
RR42_RS22890 -1.7 -4.6 TetR family transcriptional regulator compare
RR42_RS19900 -1.6 -1.5 MerR family transcriptional regulator compare
RR42_RS03630 -1.6 -1.5 cold-shock protein compare
RR42_RS17490 -1.6 -3.7 NADP transhydrogenase subunit alpha compare
RR42_RS11180 -1.6 -4.0 peptidylprolyl isomerase compare
RR42_RS05420 -1.6 -1.8 membrane protein compare
RR42_RS33215 -1.6 -8.9 transferase compare
RR42_RS11130 -1.6 -7.5 mannosyltransferase conserved
RR42_RS15415 -1.6 -2.1 membrane protein compare
RR42_RS36705 -1.6 -4.6 multidrug transporter compare
RR42_RS11155 -1.6 -7.4 long-chain fatty acid--CoA ligase conserved
RR42_RS11135 -1.6 -5.3 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS35085 -1.6 -5.1 MarR family transcriptional regulator compare
RR42_RS01880 -1.6 -5.9 cytochrome oxidase subunit I compare
RR42_RS01505 -1.6 -1.6 tRNA-Cys compare
RR42_RS15890 -1.6 -8.0 heme biosynthesis protein HemY compare
RR42_RS00830 -1.6 -6.2 cell division protein FtsN compare
RR42_RS01720 -1.5 -1.3 membrane protein compare
RR42_RS34770 -1.5 -4.8 ABC transporter substrate-binding protein compare
RR42_RS02705 -1.5 -2.2 Holliday junction DNA helicase RuvA compare
RR42_RS23120 -1.5 -3.2 hypothetical protein compare
RR42_RS15460 -1.5 -3.9 translocation protein TolB compare
RR42_RS24040 -1.5 -2.5 hypothetical protein compare
RR42_RS13025 -1.5 -4.4 hypothetical protein compare
RR42_RS05920 -1.5 -2.8 HrcA family transcriptional regulator compare
RR42_RS03360 -1.5 -3.2 fructose ABC transporter, ATPase component (FrcA) (from data) compare
RR42_RS34815 -1.4 -5.6 diguanylate cyclase compare
RR42_RS01885 -1.4 -3.0 cytochrome C oxidase assembly protein compare
RR42_RS00790 -1.4 -7.1 chemotaxis protein CheY compare
RR42_RS00610 -1.4 -4.9 hypothetical protein compare
RR42_RS12015 -1.4 -1.4 dihydrolipoamide acyltransferase compare
RR42_RS30185 -1.4 -4.0 TetR family transcriptional regulator compare
RR42_RS04300 -1.4 -3.6 nitrogen regulatory protein P-II 1 compare
RR42_RS34650 -1.4 -3.5 LacI family transcriptional regulator compare
RR42_RS06555 -1.4 -4.4 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) compare
RR42_RS01915 -1.4 -3.9 cytochrome C oxidase subunit I compare
RR42_RS34870 -1.4 -5.4 hypothetical protein compare
RR42_RS18430 -1.4 -1.9 prevent-host-death protein compare
RR42_RS01255 -1.4 -5.8 lauroyl acyltransferase compare
RR42_RS07605 -1.4 -4.6 poly-beta-hydroxybutyrate polymerase compare
RR42_RS32245 -1.4 -8.1 RND transporter compare
RR42_RS08260 -1.3 -2.5 hypothetical protein compare
RR42_RS04880 -1.3 -6.5 coproporphyrinogen III oxidase compare
RR42_RS13015 -1.3 -5.9 fatty acid hydroxylase compare
RR42_RS16590 -1.3 -3.3 hypothetical protein compare
RR42_RS09500 -1.3 -5.1 dehydrogenase compare
RR42_RS17990 -1.3 -6.1 methyltransferase compare
RR42_RS02440 -1.3 -1.1 membrane protein compare
RR42_RS06465 -1.3 -4.5 O-acetylhomoserine aminocarboxypropyltransferase compare
RR42_RS09015 -1.3 -1.7 trigger factor compare
RR42_RS01435 -1.3 -2.4 short-chain dehydrogenase compare
RR42_RS00745 -1.3 -4.5 IclR family transcriptional regulator compare
RR42_RS29610 -1.3 -1.3 cytochrome C2 compare
RR42_RS15410 -1.3 -3.8 membrane protein compare
RR42_RS35915 -1.3 -4.1 beta-ketoadipyl CoA thiolase compare
RR42_RS35875 -1.3 -6.8 UDP-galactose-4-epimerase compare
RR42_RS01545 -1.3 -5.7 TetR family transcriptional regulator compare
RR42_RS19480 -1.3 -3.5 secretion system protein G compare
RR42_RS21180 -1.2 -2.3 GNAT family acetyltransferase compare
RR42_RS17050 -1.2 -3.6 phosphoribosylglycinamide formyltransferase compare
RR42_RS15465 -1.2 -2.2 TonB-dependent receptor compare
RR42_RS17865 -1.2 -4.9 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS19485 -1.2 -1.1 general secretion pathway protein GspH compare
RR42_RS11770 -1.2 -2.0 cyclase compare
RR42_RS05485 -1.2 -1.9 polynucleotide phosphorylase/polyadenylase compare


Specific Phenotypes

For 22 genes in this experiment

For carbon source Pimelic acid in Cupriavidus basilensis FW507-4G11

For carbon source Pimelic acid across organisms