Experiment set10IT077 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS01210 -5.1 -7.0 tyrosine recombinase XerC compare
BWI76_RS20895 -4.9 -6.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS23240 -4.6 -4.5 exonuclease V subunit gamma compare
BWI76_RS05835 -4.6 -4.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS23920 -4.6 -4.1 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS26085 -4.5 -3.9 3-dehydroquinate synthase compare
BWI76_RS01615 -4.5 -11.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS09645 -4.4 -3.0 thioredoxin-disulfide reductase compare
BWI76_RS09755 -4.2 -10.4 phosphoserine transaminase compare
BWI76_RS18940 -4.1 -6.8 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS04645 -4.1 -6.8 3-dehydroquinase compare
BWI76_RS04470 -4.1 -12.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS04160 -4.0 -6.3 phosphoserine phosphatase compare
BWI76_RS21265 -4.0 -15.0 phosphoribosylformylglycinamidine synthase compare
BWI76_RS07065 -3.9 -9.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS23230 -3.8 -4.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS07070 -3.8 -7.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS09760 -3.7 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS20965 -3.7 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04465 -3.7 -6.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS20355 -3.7 -6.9 colicin V production protein compare
BWI76_RS18920 -3.6 -5.4 ATP phosphoribosyltransferase compare
BWI76_RS20350 -3.6 -7.1 amidophosphoribosyltransferase compare
BWI76_RS09970 -3.5 -9.5 porin OmpA compare
BWI76_RS11965 -3.5 -6.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS20435 -3.4 -2.1 chorismate synthase compare
BWI76_RS23360 -3.4 -4.1 diaminopimelate decarboxylase compare
BWI76_RS21475 -3.4 -8.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18950 -3.3 -4.1 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS00400 -3.3 -2.2 glutamine synthetase compare
BWI76_RS02995 -3.3 -8.9 aspartate carbamoyltransferase compare
BWI76_RS18935 -3.3 -11.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS25115 -3.2 -10.0 argininosuccinate synthase compare
BWI76_RS25645 -3.1 -7.9 shikimate dehydrogenase compare
BWI76_RS27385 -3.1 -8.3 orotate phosphoribosyltransferase compare
BWI76_RS04255 -3.1 -8.9 threonine synthase compare
BWI76_RS08385 -3.1 -5.0 citrate (Si)-synthase compare
BWI76_RS01610 -2.9 -7.5 phosphoribosylamine--glycine ligase compare
BWI76_RS00835 -2.8 -10.9 phosphoenolpyruvate carboxylase compare
BWI76_RS09910 -2.8 -14.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS23365 -2.7 -8.5 LysR family transcriptional regulator compare
BWI76_RS03010 -2.7 -10.0 ornithine carbamoyltransferase compare
BWI76_RS18955 -2.7 -7.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS18925 -2.7 -9.1 histidinol dehydrogenase compare
BWI76_RS00845 -2.6 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS01200 -2.6 -3.4 diaminopimelate epimerase compare
BWI76_RS15115 -2.6 -9.8 MFS transporter compare
BWI76_RS04250 -2.6 -9.8 homoserine kinase compare
BWI76_RS00805 -2.6 -6.4 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS04245 -2.6 -15.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS02410 -2.6 -2.9 EF-P beta-lysylation protein EpmB compare
BWI76_RS09660 -2.5 -3.0 DNA translocase FtsK compare
BWI76_RS02530 -2.5 -3.6 tRNA dimethylallyltransferase compare
BWI76_RS23220 -2.5 -7.4 amino-acid N-acetyltransferase compare
BWI76_RS05840 -2.4 -5.9 glutamate 5-kinase compare
BWI76_RS01655 -2.4 -10.4 homoserine O-succinyltransferase compare
BWI76_RS25225 -2.4 -9.4 ABC transporter permease compare
BWI76_RS27390 -2.4 -7.0 ribonuclease PH compare
BWI76_RS00850 -2.3 -10.2 acetylglutamate kinase compare
BWI76_RS04510 -2.3 -2.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS00855 -2.2 -10.1 argininosuccinate lyase compare
BWI76_RS10990 -2.2 -1.7 dihydroorotase compare
BWI76_RS04240 -2.2 -1.8 thr operon leader peptide compare
BWI76_RS18930 -2.2 -3.9 histidinol-phosphate transaminase compare
BWI76_RS00975 -2.2 -7.2 dihydroxy-acid dehydratase compare
BWI76_RS00990 -2.1 -8.8 ketol-acid reductoisomerase compare
BWI76_RS00345 -2.1 -4.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS21480 -2.0 -7.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS16965 -2.0 -2.6 murein lipoprotein compare
BWI76_RS04670 -2.0 -10.3 3-isopropylmalate dehydratase large subunit compare
BWI76_RS25230 -2.0 -8.0 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS13560 -1.9 -2.0 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS00785 -1.9 -7.2 cystathionine gamma-synthase compare
BWI76_RS08530 -1.9 -4.4 protein TolA compare
BWI76_RS04675 -1.8 -6.7 3-isopropylmalate dehydrogenase compare
BWI76_RS04530 -1.8 -2.1 peptidylprolyl isomerase SurA compare
BWI76_RS24285 -1.8 -8.4 cystathionine beta-lyase compare
BWI76_RS08520 -1.8 -2.4 colicin transporter TolQ compare
BWI76_RS00965 -1.7 -1.6 acetolactate synthase 2 small subunit compare
BWI76_RS21070 -1.7 -2.7 outer membrane protein assembly factor BamB compare
BWI76_RS23265 -1.7 -4.7 hypothetical protein compare
BWI76_RS04665 -1.7 -13.4 3-isopropylmalate dehydratase small subunit compare
BWI76_RS25335 -1.7 -5.0 stringent starvation protein A compare
BWI76_RS08495 -1.7 -6.6 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS24400 -1.6 -7.3 outer membrane channel protein TolC compare
BWI76_RS04685 -1.6 -5.3 putative leucine operon leader peptide compare
BWI76_RS09030 -1.6 -5.7 transpeptidase compare
BWI76_RS21140 -1.6 -2.7 molecular chaperone HscA compare
BWI76_RS19375 -1.5 -2.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS08525 -1.5 -5.4 colicin transporter compare
BWI76_RS19845 -1.5 -2.6 phosphatase compare
BWI76_RS11840 -1.5 -3.2 tryptophan synthase subunit alpha compare
BWI76_RS04680 -1.5 -8.2 2-isopropylmalate synthase compare
BWI76_RS21580 -1.5 -1.6 SsrA-binding protein compare
BWI76_RS11850 -1.4 -8.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS26000 -1.4 -6.8 aspartate aminotransferase family protein compare
BWI76_RS20360 -1.4 -1.6 cell division protein DedD compare
BWI76_RS15835 -1.4 -1.0 hypothetical protein compare
BWI76_RS17980 -1.4 -3.3 RNA chaperone ProQ compare
BWI76_RS22805 -1.4 -8.4 GTP diphosphokinase compare
BWI76_RS00980 -1.4 -6.8 PLP-dependent threonine dehydratase compare
BWI76_RS18385 -1.3 -1.7 hypothetical protein compare
BWI76_RS08500 -1.3 -3.2 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS21450 -1.3 -2.7 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS01275 -1.3 -4.4 LysR family transcriptional regulator compare
BWI76_RS01220 -1.3 -6.0 DNA-dependent helicase II compare
BWI76_RS19840 -1.3 -1.3 hypothetical protein compare
BWI76_RS02735 -1.2 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS05015 -1.2 -2.2 transcriptional regulator compare
BWI76_RS25320 -1.2 -5.9 glutamate synthase compare
BWI76_RS25215 -1.2 -4.8 phospholipid-binding protein MlaC compare
BWI76_RS20650 -1.2 -1.1 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS11855 -1.2 -4.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS22755 -1.2 -5.8 phosphoadenosine phosphosulfate reductase compare
BWI76_RS06465 -1.2 -1.5 IclR family transcriptional regulator compare
BWI76_RS09190 -1.2 -3.9 hypothetical protein compare
BWI76_RS20565 -1.1 -2.1 hypothetical protein compare
BWI76_RS01350 -1.1 -1.2 NAD(P)H-flavin reductase compare
BWI76_RS09635 -1.1 -2.4 amino acid ABC transporter ATP-binding protein compare
BWI76_RS25315 -1.1 -7.7 glutamate synthase large subunit compare
BWI76_RS00960 -1.1 -4.4 acetolactate synthase 2 catalytic subunit compare
BWI76_RS15660 -1.1 -1.6 hypothetical protein compare
BWI76_RS08605 -1.1 -2.6 phosphoglyceromutase compare
BWI76_RS06535 -1.1 -3.1 endopeptidase La compare
BWI76_RS20475 -1.1 -4.2 phospholipid-binding lipoprotein MlaA compare
BWI76_RS15290 -1.1 -1.6 transcriptional regulator compare
BWI76_RS05200 -1.1 -1.4 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS27820 -1.0 -1.3 ilvB operon leader peptide IvbL compare
BWI76_RS19010 -1.0 -2.9 polysaccharide pyruvyl transferase yvff compare
BWI76_RS01385 -1.0 -2.0 potassium transporter compare
BWI76_RS12790 -1.0 -1.7 lactate dehydrogenase compare
BWI76_RS24485 -1.0 -1.8 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS00355 -1.0 -3.4 DNA polymerase I compare
BWI76_RS15110 -1.0 -7.6 putative excinuclease ABC subunit A compare
BWI76_RS17720 -1.0 -1.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS26395 -1.0 -3.2 cell division protein FtsE compare
BWI76_RS01775 -1.0 -1.2 hypothetical protein compare
BWI76_RS01540 -1.0 -1.7 thiamine biosynthesis protein ThiS compare
BWI76_RS20720 -1.0 -1.4 hypothetical protein compare
BWI76_RS11860 -1.0 -4.0 anthranilate synthase component I compare
BWI76_RS27165 -0.9 -2.6 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS23030 -0.9 -1.3 cobalamin biosynthesis protein CbiM compare
BWI76_RS19215 -0.9 -2.0 proline-specific peptidase compare
BWI76_RS00985 -0.9 -4.1 transcriptional regulator IlvY compare
BWI76_RS22205 -0.9 -2.4 cation ABC transporter ATP-binding protein compare
BWI76_RS00265 -0.9 -6.1 potassium transporter Kup compare
BWI76_RS04715 -0.9 -1.0 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS17300 -0.9 -2.0 tRNA-Tyr compare
BWI76_RS17975 -0.9 -3.5 tail-specific protease compare
BWI76_RS18000 -0.9 -1.5 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
BWI76_RS26775 -0.9 -3.1 endo-1,4-D-glucanase compare
BWI76_RS16210 -0.9 -1.9 hypothetical protein compare
BWI76_RS26405 -0.9 -1.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS09655 -0.9 -3.0 leucine-responsive regulatory protein compare
BWI76_RS21370 -0.9 -1.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS25220 -0.9 -1.7 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS01090 -0.9 -3.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS05965 -0.9 -2.4 hypothetical protein compare
BWI76_RS10835 -0.9 -1.6 hypothetical protein compare
BWI76_RS20170 -0.9 -1.7 NADH-quinone oxidoreductase subunit F compare
BWI76_RS20440 -0.9 -1.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS17290 -0.9 -3.1 formyltetrahydrofolate deformylase compare
BWI76_RS15975 -0.8 -1.0 hypothetical protein compare
BWI76_RS11845 -0.8 -2.7 tryptophan synthase subunit beta compare
BWI76_RS22690 -0.8 -2.0 adenylyl-sulfate kinase compare
BWI76_RS15620 -0.8 -1.8 hypothetical protein compare
BWI76_RS01630 -0.8 -1.1 16S ribosomal RNA compare
BWI76_RS12330 -0.8 -2.9 hypothetical protein compare
BWI76_RS13645 -0.8 -1.7 N-hydroxyarylamine O-acetyltransferase compare
BWI76_RS08535 -0.8 -1.5 translocation protein TolB compare
BWI76_RS15645 -0.8 -4.0 gp6 compare
BWI76_RS08330 -0.8 -1.3 hypothetical protein compare
BWI76_RS19685 -0.8 -3.2 lysine transporter compare
BWI76_RS20640 -0.8 -2.2 cysteine synthase A compare
BWI76_RS12295 -0.8 -2.9 hypothetical protein compare
BWI76_RS18360 -0.8 -1.7 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS26075 -0.8 -2.7 DNA adenine methylase compare
BWI76_RS15705 -0.8 -3.0 putative holin protein compare
BWI76_RS13955 -0.8 -2.4 hypothetical protein compare
BWI76_RS04050 -0.8 -2.0 hydroxamate siderophore iron reductase FhuF compare
BWI76_RS26570 -0.8 -1.7 anion permease compare
BWI76_RS14625 -0.8 -1.1 protein TolA compare
BWI76_RS09640 -0.7 -2.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS02180 -0.7 -1.2 hypothetical protein compare
BWI76_RS21350 -0.7 -1.4 anti-RNA polymerase sigma factor SigE compare
BWI76_RS08880 -0.7 -3.5 secretion protein HlyD compare
BWI76_RS05075 -0.7 -0.9 type II secretion system protein GspG compare
BWI76_RS10955 -0.7 -1.4 hypothetical protein compare
BWI76_RS24945 -0.7 -1.0 glutamine amidotransferase compare
BWI76_RS00180 -0.7 -1.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS09650 -0.7 -2.6 hypothetical protein compare
BWI76_RS25480 -0.7 -2.3 ribonuclease E/G compare
BWI76_RS13820 -0.7 -1.3 hypothetical protein compare
BWI76_RS15670 -0.7 -2.4 hypothetical protein compare
BWI76_RS21395 -0.7 -1.8 DTW domain-containing protein compare
BWI76_RS10430 -0.7 -2.6 thiol:disulfide interchange protein DsbG compare
BWI76_RS15825 -0.7 -2.1 hypothetical protein compare
BWI76_RS01195 -0.7 -1.3 membrane protein compare
BWI76_RS01795 -0.7 -2.8 hypothetical protein compare
BWI76_RS20750 -0.7 -1.0 carboxysome structural protein EutK compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms