Experiment set10IT077 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium adipate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -7.1 -4.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS06485 -5.1 -6.1 chorismate synthase compare
RR42_RS14390 -5.0 -3.4 3-isopropylmalate dehydratase compare
RR42_RS04475 -4.8 -10.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS24605 -4.7 -10.4 TetR family transcriptional regulator compare
RR42_RS18305 -4.6 -3.2 anthranilate phosphoribosyltransferase compare
RR42_RS14400 -4.5 -3.1 isopropylmalate isomerase compare
RR42_RS16250 -4.4 -6.7 sulfate adenylyltransferase compare
RR42_RS14365 -4.4 -3.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS12040 -4.4 -15.1 MFS transporter compare
RR42_RS05860 -4.3 -3.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS26935 -4.3 -2.9 farnesyl-diphosphate farnesyltransferase compare
RR42_RS14385 -4.2 -4.9 3-isopropylmalate dehydrogenase compare
RR42_RS30655 -4.1 -5.6 LysR family transcriptional regulator compare
RR42_RS16280 -4.0 -9.3 transcriptional regulator compare
RR42_RS01385 -4.0 -3.4 5,10-methylenetetrahydrofolate reductase compare
RR42_RS19005 -4.0 -6.1 3-dehydroquinate synthase compare
RR42_RS06395 -4.0 -10.9 TetR family transcriptional regulator compare
RR42_RS00380 -4.0 -11.1 GntR family transcriptional regulator compare
RR42_RS01160 -3.8 -10.4 homoserine O-acetyltransferase compare
RR42_RS18295 -3.7 -8.2 anthranilate synthase component I compare
RR42_RS20375 -3.6 -4.9 transcriptional regulator compare
RR42_RS21420 -3.6 -9.2 acyl-CoA dehydrogenase compare
RR42_RS09100 -3.6 -8.7 transcriptional regulator compare
RR42_RS35905 -3.5 -9.1 LacI family transcriptional regulator compare
RR42_RS12015 -3.5 -2.4 dihydrolipoamide acyltransferase compare
RR42_RS01845 -3.5 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS16275 -3.4 -4.2 membrane protein compare
RR42_RS16270 -3.4 -8.1 sulfite reductase compare
RR42_RS12590 -3.3 -1.3 50S ribosomal protein L9 compare
RR42_RS18815 -3.2 -7.0 cytochrome C compare
RR42_RS16255 -3.1 -7.0 sulfate adenylyltransferase compare
RR42_RS14360 -3.1 -1.8 tryptophan synthase subunit alpha compare
RR42_RS07555 -3.1 -2.1 potassium transporter Kup compare
RR42_RS19090 -3.0 -2.0 cytochrome C compare
RR42_RS17105 -3.0 -11.9 Clp protease ClpX compare
RR42_RS30660 -3.0 -6.8 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS18990 -3.0 -18.4 glutamate synthase compare
RR42_RS02810 -2.9 -3.3 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS09015 -2.9 -3.2 trigger factor compare
RR42_RS02060 -2.9 -9.4 nucleotide-binding protein compare
RR42_RS36695 -2.8 -9.2 heavy metal resistance protein CzcA compare
RR42_RS21595 -2.7 -5.7 IclR family transcriptional regulator compare
RR42_RS05990 -2.7 -8.5 aromatic amino acid aminotransferase compare
RR42_RS36700 -2.7 -5.0 multidrug transporter compare
RR42_RS14320 -2.7 -4.2 O-succinylhomoserine sulfhydrylase compare
RR42_RS35445 -2.7 -5.6 ArsR family transcriptional regulator compare
RR42_RS28885 -2.6 -6.0 membrane protein compare
RR42_RS21405 -2.6 -9.7 LysR family transcriptional regulator conserved
RR42_RS11145 -2.6 -9.6 ABC transporter permease compare
RR42_RS22165 -2.6 -2.2 hypothetical protein compare
RR42_RS15470 -2.6 -1.4 biopolymer transporter ExbD compare
RR42_RS15455 -2.6 -5.1 membrane protein compare
RR42_RS06875 -2.5 -3.1 hypothetical protein compare
RR42_RS01290 -2.4 -7.8 thiamine biosynthesis protein ThiC compare
RR42_RS17620 -2.4 -4.0 phosphatidylglycerophosphatase compare
RR42_RS00715 -2.4 -1.6 ferritin compare
RR42_RS16240 -2.4 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS27735 -2.4 -12.7 GntR family transcriptional regulator compare
RR42_RS33255 -2.4 -4.4 protein-tyrosine phosphatase compare
RR42_RS14080 -2.3 -8.1 RNA polymerase sigma factor RpoE compare
RR42_RS00830 -2.3 -5.6 cell division protein FtsN compare
RR42_RS18985 -2.3 -5.2 glutamate synthase compare
RR42_RS18840 -2.3 -5.0 2-alkenal reductase compare
RR42_RS16260 -2.3 -3.0 phosphoadenosine phosphosulfate reductase compare
RR42_RS33575 -2.3 -2.1 hypothetical protein compare
RR42_RS01185 -2.2 -11.3 muropeptide transporter compare
RR42_RS17930 -2.2 -3.9 RNA pyrophosphohydrolase compare
RR42_RS01260 -2.2 -6.1 lauroyl acyltransferase compare
RR42_RS00250 -2.2 -6.8 GntR family transcriptional regulator compare
RR42_RS19795 -2.2 -3.8 GntR family transcriptional regulator compare
RR42_RS11150 -2.2 -10.0 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS32245 -2.2 -13.5 RND transporter compare
RR42_RS05420 -2.1 -2.0 membrane protein compare
RR42_RS33250 -2.1 -7.7 tyrosine protein kinase compare
RR42_RS01255 -2.1 -5.6 lauroyl acyltransferase compare
RR42_RS17720 -2.1 -2.1 sugar kinase compare
RR42_RS16245 -2.1 -4.0 uroporphyrin-III methyltransferase compare
RR42_RS20380 -2.1 -6.2 histidine kinase compare
RR42_RS18300 -2.1 -3.0 anthranilate synthase subunit II compare
RR42_RS11135 -2.0 -5.5 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS12050 -2.0 -7.9 DNA polymerase compare
RR42_RS36705 -2.0 -5.8 multidrug transporter compare
RR42_RS26265 -2.0 -1.2 hypothetical protein compare
RR42_RS11130 -2.0 -7.9 mannosyltransferase compare
RR42_RS04470 -2.0 -4.4 prephenate dehydrogenase compare
RR42_RS24985 -2.0 -2.9 hypothetical protein compare
RR42_RS34650 -2.0 -4.9 LacI family transcriptional regulator compare
RR42_RS06240 -2.0 -1.9 tryptophan--tRNA ligase compare
RR42_RS19500 -2.0 -7.7 general secretion pathway protein GspK compare
RR42_RS04460 -2.0 -3.9 chorismate mutase compare
RR42_RS21530 -1.9 -8.5 IclR family transcriptional regulator compare
RR42_RS20205 -1.9 -2.6 chromosome partitioning protein compare
RR42_RS02750 -1.9 -7.8 mannose-1-phosphate guanylyltransferase compare
RR42_RS15460 -1.9 -3.9 translocation protein TolB compare
RR42_RS17055 -1.9 -5.5 LuxR family transcriptional regulator compare
RR42_RS33260 -1.9 -7.1 multidrug MFS transporter compare
RR42_RS05485 -1.9 -2.4 polynucleotide phosphorylase/polyadenylase compare
RR42_RS11140 -1.9 -6.5 ABC transporter permease compare
RR42_RS04535 -1.9 -2.2 cysteine synthase compare
RR42_RS02705 -1.9 -2.2 Holliday junction DNA helicase RuvA compare
RR42_RS18825 -1.9 -2.6 ubiquinol-cytochrome C reductase compare
RR42_RS18855 -1.8 -1.2 preprotein translocase compare
RR42_RS12615 -1.8 -1.9 LexA family transcriptional regulator compare
RR42_RS33240 -1.8 -10.9 GDP-L-fucose synthase compare
RR42_RS28935 -1.8 -7.7 hypothetical protein compare
RR42_RS16220 -1.8 -1.4 DNA polymerase III subunit chi compare
RR42_RS08025 -1.7 -1.7 phage Gp37Gp68 compare
RR42_RS01545 -1.7 -5.7 TetR family transcriptional regulator compare
RR42_RS07545 -1.7 -8.2 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS02320 -1.7 -3.3 trehalose phosphatase compare
RR42_RS07425 -1.7 -5.8 IclR family transcriptional regulator compare
RR42_RS04300 -1.7 -3.9 nitrogen regulatory protein P-II 1 compare
RR42_RS02330 -1.7 -7.7 trehalose-6-phosphate synthase compare
RR42_RS04180 -1.7 -1.6 methyltransferase compare
RR42_RS19495 -1.7 -4.7 general secretion pathway protein GspJ compare
RR42_RS35295 -1.7 -1.8 diguanylate cyclase compare
RR42_RS19475 -1.7 -4.6 general secretion pathway protein compare
RR42_RS35085 -1.7 -3.9 MarR family transcriptional regulator compare
RR42_RS01830 -1.7 -3.7 sulfurtransferase compare
RR42_RS21425 -1.7 -5.9 hypothetical protein compare
RR42_RS25785 -1.6 -1.5 TetR family transcriptional regulator compare
RR42_RS01920 -1.6 -2.9 protoheme IX farnesyltransferase compare
RR42_RS24040 -1.6 -2.5 hypothetical protein compare
RR42_RS34870 -1.6 -4.4 hypothetical protein compare
RR42_RS17990 -1.6 -6.9 methyltransferase compare
RR42_RS13195 -1.6 -7.2 protein-L-isoaspartate O-methyltransferase compare
RR42_RS18965 -1.6 -8.9 ABC transporter permease compare
RR42_RS03105 -1.6 -4.7 integral membrane protein compare
RR42_RS19510 -1.6 -3.4 general secretion pathway protein GspM compare
RR42_RS19530 -1.5 -10.0 general secretion pathway protein GspF compare
RR42_RS00410 -1.5 -4.8 transcriptional regulator compare
RR42_RS21430 -1.5 -9.5 alpha-ketoglutarate permease conserved
RR42_RS22890 -1.5 -4.4 TetR family transcriptional regulator compare
RR42_RS01795 -1.5 -11.0 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS07540 -1.5 -9.2 ABC transporter permease compare
RR42_RS34535 -1.5 -1.7 membrane protein compare
RR42_RS19410 -1.5 -5.0 GntR family transcriptional regulator compare
RR42_RS01915 -1.5 -4.6 cytochrome C oxidase subunit I compare
RR42_RS20210 -1.5 -2.4 16S rRNA methyltransferase compare
RR42_RS01885 -1.5 -3.3 cytochrome C oxidase assembly protein compare
RR42_RS09920 -1.5 -4.3 TetR family transcriptional regulator compare
RR42_RS11795 -1.5 -2.1 PEP synthetase regulatory protein compare
RR42_RS00115 -1.5 -1.6 hypothetical protein compare
RR42_RS00420 -1.5 -3.6 hypothetical protein compare
RR42_RS17740 -1.5 -3.9 hypothetical protein compare
RR42_RS33235 -1.5 -7.7 GDP-mannose 4,6-dehydratase compare
RR42_RS35915 -1.4 -1.9 beta-ketoadipyl CoA thiolase compare
RR42_RS11120 -1.4 -4.6 DNA-binding protein compare
RR42_RS28290 -1.4 -2.2 DNA-binding protein compare
RR42_RS28315 -1.4 -2.8 GntR family transcriptional regulator compare
RR42_RS11770 -1.4 -2.0 cyclase compare
RR42_RS18970 -1.4 -8.3 toluene ABC transporter ATP-binding protein compare
RR42_RS18960 -1.4 -8.9 ABC transporter substrate-binding protein compare
RR42_RS05670 -1.4 -2.2 urease subunit beta compare
RR42_RS15475 -1.4 -3.5 protein tolQ compare
RR42_RS22585 -1.4 -1.4 MarR family transcriptional regulator compare
RR42_RS19065 -1.4 -4.1 transcriptional regulator compare
RR42_RS07535 -1.4 -6.9 ABC transporter permease compare
RR42_RS24235 -1.4 -2.6 hypothetical protein compare
RR42_RS26900 -1.4 -1.5 enoyl-CoA hydratase compare
RR42_RS13015 -1.4 -4.5 fatty acid hydroxylase compare
RR42_RS17885 -1.4 -3.9 ABC transporter permease compare
RR42_RS20775 -1.4 -0.8 hypothetical protein compare
RR42_RS20370 -1.4 -1.0 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS21180 -1.4 -2.2 GNAT family acetyltransferase compare
RR42_RS20420 -1.4 -8.3 maltoporin compare
RR42_RS10610 -1.3 -6.0 hypothetical protein compare
RR42_RS32070 -1.3 -2.8 LysR family transcriptional regulator compare
RR42_RS03385 -1.3 -5.5 sugar kinase compare
RR42_RS15585 -1.3 -8.1 lytic transglycosylase compare
RR42_RS23685 -1.3 -4.9 transcriptional regulator compare
RR42_RS21630 -1.3 -2.5 Asp/Glu racemase compare
RR42_RS33650 -1.3 -2.1 IclR family transcriptional regulator compare
RR42_RS11155 -1.3 -6.0 long-chain fatty acid--CoA ligase compare
RR42_RS05415 -1.3 -3.7 membrane protein compare
RR42_RS05885 -1.3 -5.0 hypothetical protein compare
RR42_RS19505 -1.3 -3.1 general secretion pathway protein GspL compare
RR42_RS15410 -1.3 -3.5 membrane protein compare
RR42_RS15770 -1.3 -3.0 hypothetical protein compare
RR42_RS00745 -1.3 -4.1 IclR family transcriptional regulator compare
RR42_RS01680 -1.3 -6.0 cytochrome C550 compare
RR42_RS02205 -1.3 -1.5 succinate dehydrogenase compare
RR42_RS09045 -1.3 -6.5 peptidylprolyl isomerase compare
RR42_RS02240 -1.2 -3.4 D-galactarate dehydratase compare
RR42_RS19520 -1.2 -7.7 general secretion pathway protein GspD compare
RR42_RS14055 -1.2 -1.8 elongation factor 4 compare
RR42_RS23140 -1.2 -1.0 peptidylprolyl isomerase compare
RR42_RS34815 -1.2 -2.9 diguanylate cyclase compare
RR42_RS18945 -1.2 -4.0 toluene tolerance protein compare
RR42_RS35275 -1.2 -4.1 membrane protein compare
RR42_RS33210 -1.2 -3.5 teichoic acid biosynthesis protein compare
RR42_RS29255 -1.2 -5.3 GTP cyclohydrolase compare
RR42_RS01025 -1.2 -3.8 GTPase compare
RR42_RS14220 -1.2 -2.2 ferredoxin-NADP reductase compare
RR42_RS35485 -1.2 -7.2 hypothetical protein compare
RR42_RS09590 -1.2 -2.1 hypothetical protein compare
RR42_RS09500 -1.2 -2.8 dehydrogenase compare
RR42_RS02860 -1.2 -1.4 hypothetical protein compare
RR42_RS37375 -1.2 -2.1 short-chain dehydrogenase compare


Specific Phenotypes

For 48 genes in this experiment

For carbon source Sodium adipate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium adipate across organisms