Experiment set10IT076 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS01210 -4.9 -5.1 tyrosine recombinase XerC compare
BWI76_RS00805 -4.6 -7.0 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS23240 -4.4 -5.2 exonuclease V subunit gamma compare
BWI76_RS25645 -4.4 -8.4 shikimate dehydrogenase compare
BWI76_RS26085 -4.4 -3.7 3-dehydroquinate synthase compare
BWI76_RS20355 -4.2 -4.5 colicin V production protein compare
BWI76_RS07070 -4.2 -6.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS09755 -4.2 -10.4 phosphoserine transaminase compare
BWI76_RS23230 -4.1 -4.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS20895 -4.1 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS09970 -4.0 -2.6 porin OmpA compare
BWI76_RS09760 -4.0 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS09660 -3.9 -3.6 DNA translocase FtsK compare
BWI76_RS23920 -3.9 -7.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS21475 -3.8 -7.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18920 -3.6 -2.7 ATP phosphoribosyltransferase compare
BWI76_RS18950 -3.6 -5.3 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS07065 -3.5 -8.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS21265 -3.5 -15.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS25215 -3.5 -7.1 phospholipid-binding protein MlaC compare
BWI76_RS25230 -3.4 -9.3 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS20965 -3.4 -5.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS24400 -3.4 -8.7 outer membrane channel protein TolC compare
BWI76_RS01200 -3.4 -3.2 diaminopimelate epimerase compare
BWI76_RS18940 -3.3 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS20435 -3.3 -2.0 chorismate synthase compare
BWI76_RS04645 -3.3 -5.8 3-dehydroquinase compare
BWI76_RS18925 -3.3 -9.8 histidinol dehydrogenase compare
BWI76_RS05835 -3.3 -3.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS01615 -3.2 -11.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS17975 -3.2 -6.7 tail-specific protease compare
BWI76_RS00400 -3.2 -2.1 glutamine synthetase compare
BWI76_RS27430 -3.0 -2.0 (p)ppGpp synthetase compare
BWI76_RS01610 -3.0 -7.5 phosphoribosylamine--glycine ligase compare
BWI76_RS04160 -2.9 -7.9 phosphoserine phosphatase compare
BWI76_RS20350 -2.9 -8.9 amidophosphoribosyltransferase compare
BWI76_RS04530 -2.9 -2.0 peptidylprolyl isomerase SurA compare
BWI76_RS23360 -2.8 -5.3 diaminopimelate decarboxylase compare
BWI76_RS00855 -2.8 -9.3 argininosuccinate lyase compare
BWI76_RS04255 -2.7 -11.6 threonine synthase compare
BWI76_RS09635 -2.7 -3.6 amino acid ABC transporter ATP-binding protein compare
BWI76_RS05840 -2.6 -5.8 glutamate 5-kinase compare
BWI76_RS11965 -2.6 -3.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS17980 -2.6 -4.1 RNA chaperone ProQ compare
BWI76_RS08525 -2.6 -3.8 colicin transporter compare
BWI76_RS18935 -2.6 -9.0 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS06775 -2.6 -13.1 multidrug efflux RND transporter permease subunit compare
BWI76_RS16965 -2.5 -5.4 murein lipoprotein compare
BWI76_RS09640 -2.5 -5.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS00345 -2.5 -4.3 protein disulfide oxidoreductase DsbA compare
BWI76_RS04470 -2.4 -9.5 carbamoyl phosphate synthase large subunit compare
BWI76_RS18930 -2.4 -6.8 histidinol-phosphate transaminase compare
BWI76_RS02530 -2.4 -2.9 tRNA dimethylallyltransferase compare
BWI76_RS23365 -2.3 -7.9 LysR family transcriptional regulator compare
BWI76_RS25225 -2.3 -4.2 ABC transporter permease compare
BWI76_RS04465 -2.3 -5.8 carbamoyl-phosphate synthase small subunit compare
BWI76_RS00845 -2.3 -9.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00835 -2.3 -12.2 phosphoenolpyruvate carboxylase compare
BWI76_RS23220 -2.3 -9.3 amino-acid N-acetyltransferase compare
BWI76_RS00990 -2.2 -9.9 ketol-acid reductoisomerase compare
BWI76_RS08500 -2.2 -3.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS08535 -2.2 -3.4 translocation protein TolB compare
BWI76_RS20475 -2.2 -4.0 phospholipid-binding lipoprotein MlaA compare
BWI76_RS06780 -2.1 -8.7 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS25220 -2.1 -3.6 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS24285 -2.1 -8.9 cystathionine beta-lyase compare
BWI76_RS18955 -2.1 -7.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS02725 -2.1 -1.9 HxlR family transcriptional regulator compare
BWI76_RS04245 -2.1 -12.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS03010 -2.1 -6.8 ornithine carbamoyltransferase compare
BWI76_RS00850 -2.1 -10.7 acetylglutamate kinase compare
BWI76_RS02995 -2.1 -9.1 aspartate carbamoyltransferase compare
BWI76_RS25335 -2.1 -4.3 stringent starvation protein A compare
BWI76_RS15115 -2.0 -9.0 MFS transporter compare
BWI76_RS25115 -2.0 -7.8 argininosuccinate synthase compare
BWI76_RS08495 -2.0 -7.5 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS26570 -2.0 -3.3 anion permease compare
BWI76_RS00975 -1.9 -8.4 dihydroxy-acid dehydratase compare
BWI76_RS09030 -1.9 -5.3 transpeptidase compare
BWI76_RS01325 -1.9 -3.5 twin-arginine translocase subunit TatB compare
BWI76_RS04250 -1.9 -7.2 homoserine kinase compare
BWI76_RS04670 -1.9 -9.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS17720 -1.8 -1.8 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS26000 -1.8 -7.6 aspartate aminotransferase family protein compare
BWI76_RS04305 -1.8 -1.4 molecular chaperone DnaJ compare
BWI76_RS17300 -1.8 -2.8 tRNA-Tyr compare
BWI76_RS23265 -1.8 -4.5 hypothetical protein compare
BWI76_RS11860 -1.7 -7.5 anthranilate synthase component I compare
BWI76_RS01655 -1.7 -6.3 homoserine O-succinyltransferase compare
BWI76_RS04665 -1.7 -12.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS15835 -1.7 -1.5 hypothetical protein compare
BWI76_RS26200 -1.7 -4.6 starch synthase compare
BWI76_RS04675 -1.7 -5.3 3-isopropylmalate dehydrogenase compare
BWI76_RS00785 -1.6 -6.4 cystathionine gamma-synthase compare
BWI76_RS25320 -1.6 -7.1 glutamate synthase compare
BWI76_RS10935 -1.6 -5.6 glucan biosynthesis glucosyltransferase H compare
BWI76_RS04240 -1.6 -1.5 thr operon leader peptide compare
BWI76_RS26075 -1.6 -4.3 DNA adenine methylase compare
BWI76_RS00965 -1.6 -1.4 acetolactate synthase 2 small subunit compare
BWI76_RS00715 -1.6 -3.2 two-component sensor histidine kinase compare
BWI76_RS18135 -1.5 -5.3 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS05450 -1.5 -1.5 ribonuclease HI compare
BWI76_RS11855 -1.5 -7.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS04685 -1.5 -6.6 putative leucine operon leader peptide compare
BWI76_RS11840 -1.5 -2.8 tryptophan synthase subunit alpha compare
BWI76_RS11850 -1.5 -5.9 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS25315 -1.5 -8.2 glutamate synthase large subunit compare
BWI76_RS04680 -1.5 -7.9 2-isopropylmalate synthase compare
BWI76_RS11845 -1.5 -2.9 tryptophan synthase subunit beta compare
BWI76_RS02410 -1.4 -2.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS27310 -1.4 -6.6 glycosyltransferase compare
BWI76_RS19375 -1.4 -2.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS00355 -1.4 -3.2 DNA polymerase I compare
BWI76_RS01220 -1.4 -6.4 DNA-dependent helicase II compare
BWI76_RS19845 -1.4 -3.2 phosphatase compare
BWI76_RS00960 -1.3 -6.0 acetolactate synthase 2 catalytic subunit compare
BWI76_RS08530 -1.3 -2.6 protein TolA compare
BWI76_RS15825 -1.3 -2.8 hypothetical protein compare
BWI76_RS24280 -1.3 -4.8 biopolymer transporter ExbB compare
BWI76_RS10930 -1.3 -5.9 glucan biosynthesis protein G compare
BWI76_RS25600 -1.3 -1.1 tRNA-Thr compare
BWI76_RS21480 -1.3 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS21370 -1.2 -2.4 ATP-dependent RNA helicase SrmB compare
BWI76_RS15660 -1.2 -1.8 hypothetical protein compare
BWI76_RS08605 -1.2 -2.3 phosphoglyceromutase compare
BWI76_RS01800 -1.2 -3.1 glucose-6-phosphate isomerase compare
BWI76_RS24885 -1.2 -2.0 PTS galactitol transporter subunit IIB compare
BWI76_RS19010 -1.2 -2.7 polysaccharide pyruvyl transferase yvff compare
BWI76_RS21350 -1.2 -1.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS15110 -1.2 -8.4 putative excinuclease ABC subunit A compare
BWI76_RS09190 -1.2 -3.9 hypothetical protein compare
BWI76_RS07740 -1.2 -2.1 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS21070 -1.2 -1.6 outer membrane protein assembly factor BamB compare
BWI76_RS01275 -1.1 -3.9 LysR family transcriptional regulator compare
BWI76_RS01280 -1.1 -5.9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS21660 -1.1 -1.8 antirestriction protein compare
BWI76_RS25280 -1.1 -1.9 RNase adaptor protein RapZ compare
BWI76_RS23885 -1.1 -1.4 2-octaprenylphenol hydroxylase compare
BWI76_RS22805 -1.1 -6.9 GTP diphosphokinase compare
BWI76_RS01330 -1.1 -2.9 twin-arginine translocase subunit TatC compare
BWI76_RS10745 -1.1 -1.4 hypothetical protein compare
BWI76_RS21450 -1.1 -1.7 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS18140 -1.1 -3.0 zinc ABC transporter permease compare
BWI76_RS20650 -1.1 -1.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS16210 -1.0 -1.3 hypothetical protein compare
BWI76_RS25065 -1.0 -2.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS23970 -1.0 -2.4 mechanosensitive ion channel protein MscS compare
BWI76_RS00025 -1.0 -1.0 hypothetical protein compare
BWI76_RS20720 -1.0 -1.8 hypothetical protein compare
BWI76_RS10990 -1.0 -2.9 dihydroorotase compare
BWI76_RS17190 -1.0 -2.2 TonB system transport protein TonB compare
BWI76_RS26665 -1.0 -2.5 DNA-binding response regulator compare
BWI76_RS16250 -1.0 -5.1 DNA-binding response regulator compare
BWI76_RS21310 -1.0 -1.2 DNA repair protein RecO compare
BWI76_RS15705 -1.0 -5.5 putative holin protein compare
BWI76_RS13820 -1.0 -2.5 hypothetical protein compare
BWI76_RS27875 -1.0 -1.6 membrane protein compare
BWI76_RS08385 -1.0 -3.0 citrate (Si)-synthase compare
BWI76_RS01115 -1.0 -2.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS01110 -1.0 -2.5 TDP-fucosamine acetyltransferase compare
BWI76_RS26670 -1.0 -5.1 two-component sensor histidine kinase compare
BWI76_RS12190 -1.0 -5.5 glycoside hydrolase family protein compare
BWI76_RS19615 -0.9 -3.7 vancomycin high temperature exclusion protein compare
BWI76_RS04715 -0.9 -1.2 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS27015 -0.9 -2.2 hypothetical protein compare
BWI76_RS09730 -0.9 -1.3 pyruvate formate lyase 1-activating protein compare
BWI76_RS08515 -0.9 -2.0 acyl-CoA thioesterase YbgC compare
BWI76_RS25960 -0.9 -2.2 NUDIX hydrolase compare
BWI76_RS27680 -0.9 -3.3 TetR family transcriptional regulator compare
BWI76_RS20440 -0.9 -1.6 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS15435 -0.9 -1.6 hypothetical protein compare
BWI76_RS17290 -0.9 -2.7 formyltetrahydrofolate deformylase compare
BWI76_RS06770 -0.9 -5.4 Hha toxicity attenuator compare
BWI76_RS24945 -0.9 -1.1 glutamine amidotransferase compare
BWI76_RS26405 -0.9 -1.6 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS15630 -0.9 -2.8 hypothetical protein compare
BWI76_RS05965 -0.9 -1.4 hypothetical protein compare
BWI76_RS22205 -0.9 -2.5 cation ABC transporter ATP-binding protein compare
BWI76_RS21140 -0.9 -1.4 molecular chaperone HscA compare
BWI76_RS11610 -0.9 -1.6 glutamate dehydrogenase compare
BWI76_RS01090 -0.9 -2.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS01065 -0.9 -2.9 ATP-dependent RNA helicase RhlB compare
BWI76_RS21465 -0.9 -3.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS25060 -0.9 -2.7 lipoprotein NlpI compare
BWI76_RS18130 -0.9 -2.7 zinc ABC transporter substrate-binding protein compare
BWI76_RS13470 -0.9 -2.2 transporter compare
BWI76_RS12305 -0.9 -2.1 hypothetical protein compare
BWI76_RS26080 -0.8 -3.8 cell division protein DamX compare
BWI76_RS09655 -0.8 -2.7 leucine-responsive regulatory protein compare
BWI76_RS00980 -0.8 -4.7 PLP-dependent threonine dehydratase compare
BWI76_RS13645 -0.8 -1.9 N-hydroxyarylamine O-acetyltransferase compare
BWI76_RS06680 -0.8 -1.0 hypothetical protein compare
BWI76_RS26620 -0.8 -0.9 Fe-S biogenesis protein NfuA compare
BWI76_RS05015 -0.8 -1.1 transcriptional regulator compare
BWI76_RS17400 -0.8 -1.2 transporter compare
BWI76_RS19035 -0.8 -3.7 dTDP-rhamnosyl transferase compare
BWI76_RS04100 -0.8 -2.4 peptide chain release factor 3 compare
BWI76_RS27820 -0.8 -1.7 ilvB operon leader peptide IvbL compare
BWI76_RS22645 -0.8 -2.8 RNA polymerase sigma factor RpoS compare
BWI76_RS21685 -0.8 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms