Experiment set10IT076 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS21075 +2.0 3.3 membrane protein compare
BWI76_RS05465 +1.7 2.5 amidohydrolase compare
BWI76_RS01890 +1.3 5.1 transcriptional regulator Zur compare
BWI76_RS00140 +1.2 2.1 phosphate transport system regulator PhoU compare
BWI76_RS25485 +1.2 2.5 septum formation protein Maf compare
BWI76_RS07725 +1.2 1.6 iron-enterobactin transporter permease compare
BWI76_RS08405 +1.1 2.9 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS16805 +1.1 2.6 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS23895 +1.0 1.7 Xaa-Pro aminopeptidase compare
BWI76_RS04805 +1.0 1.5 8-oxo-dGTP diphosphatase compare
BWI76_RS01630 +0.9 1.8 16S ribosomal RNA compare
BWI76_RS18870 +0.9 1.7 protein NifZ compare
BWI76_RS07165 +0.9 2.6 hypothetical protein compare
BWI76_RS19775 +0.9 2.4 phage resistance protein compare
BWI76_RS06810 +0.9 3.5 hypothetical protein compare
BWI76_RS14835 +0.9 1.6 hypothetical protein compare
BWI76_RS11255 +0.9 1.5 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS20995 +0.8 4.8 RNA degradosome polyphosphate kinase compare
BWI76_RS07710 +0.8 3.7 invasin-like protein compare
BWI76_RS09335 +0.8 1.6 baseplate assembly protein W compare
BWI76_RS09530 +0.8 1.0 hypothetical protein compare
BWI76_RS21505 +0.8 1.5 hypothetical protein compare
BWI76_RS02690 +0.8 2.3 hypothetical protein compare
BWI76_RS01565 +0.8 1.7 NADH pyrophosphatase compare
BWI76_RS06340 +0.8 1.0 hypothetical protein compare
BWI76_RS07640 +0.8 1.5 short chain dehydrogenase compare
BWI76_RS21375 +0.8 1.7 autonomous glycyl radical cofactor GrcA compare
BWI76_RS17805 +0.7 1.5 membrane protein compare
BWI76_RS07470 +0.7 2.0 MBL fold metallo-hydrolase compare
BWI76_RS19330 +0.7 0.8 HAD family hydrolase compare
BWI76_RS19695 +0.7 2.2 membrane protein compare
BWI76_RS19100 +0.7 2.7 putative acid phosphatase compare
BWI76_RS06665 +0.7 2.0 membrane protein compare
BWI76_RS20805 +0.7 2.0 phosphate acetyltransferase compare
BWI76_RS04200 +0.7 2.4 phosphoglycerate mutase GpmB compare
BWI76_RS03595 +0.7 1.3 ethanolamine utilization protein EutM compare
BWI76_RS16870 +0.7 2.5 LysR family transcriptional regulator compare
BWI76_RS25545 +0.7 2.8 hypothetical protein compare
BWI76_RS20385 +0.7 2.7 aspartate-semialdehyde dehydrogenase compare
BWI76_RS27675 +0.7 4.1 EmrB/QacA family drug resistance transporter compare
BWI76_RS09825 +0.7 4.5 envelope biogenesis factor ElyC compare
BWI76_RS00640 +0.7 2.0 L-rhamnose mutarotase compare
BWI76_RS21810 +0.6 0.9 universal stress protein compare
BWI76_RS23965 +0.6 2.0 arginine exporter protein compare
BWI76_RS14680 +0.6 2.6 SefF compare
BWI76_RS11285 +0.6 1.2 transcriptional regulator compare
BWI76_RS16160 +0.6 2.1 LysR family transcriptional regulator compare
BWI76_RS08380 +0.6 0.8 endonuclease VIII compare
BWI76_RS14980 +0.6 1.3 hypothetical protein compare
BWI76_RS00865 +0.6 2.4 DNA-binding transcriptional regulator OxyR compare
BWI76_RS11250 +0.6 1.1 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS14075 +0.6 0.9 TetR family transcriptional regulator compare
BWI76_RS23125 +0.6 1.7 propanediol dehydratase small subunit compare
BWI76_RS21675 +0.6 1.3 hypothetical protein compare
BWI76_RS06805 +0.6 2.9 primosomal replication protein N'' compare
BWI76_RS14540 +0.6 1.7 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS20380 +0.6 0.9 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS24925 +0.6 1.6 DnaA initiator-associating protein DiaA compare
BWI76_RS14005 +0.6 1.5 TetR family transcriptional regulator compare
BWI76_RS15035 +0.6 1.5 metal ABC transporter permease compare
BWI76_RS21445 +0.6 2.7 hypothetical protein compare
BWI76_RS06290 +0.6 1.6 ACP phosphodiesterase compare
BWI76_RS26575 +0.6 2.7 universal stress protein B compare
BWI76_RS09015 +0.6 1.9 aldo/keto reductase compare
BWI76_RS16360 +0.6 1.1 electron transport complex subunit RsxB compare
BWI76_RS24965 +0.6 2.3 SCP2 domain-containing protein compare
BWI76_RS23120 +0.6 1.8 propanediol dehydratase medium subunit compare
BWI76_RS24040 +0.6 1.7 hypothetical protein compare
BWI76_RS23055 +0.6 2.4 cobalamin biosynthesis protein CbiG compare
BWI76_RS16070 +0.6 2.9 N-acetylmuramic acid 6-phosphate etherase compare
BWI76_RS11780 +0.6 2.1 2-deoxyglucose-6-phosphatase compare
BWI76_RS16115 +0.6 2.3 fumarate hydratase compare
BWI76_RS11835 +0.6 1.6 putative regulatory protein MarR compare
BWI76_RS20900 +0.6 1.2 outer membrane protein assembly factor BamC compare
BWI76_RS02585 +0.6 2.9 hypothetical protein compare
BWI76_RS18385 +0.6 1.1 hypothetical protein compare
BWI76_RS22520 +0.6 3.1 3-oxoacyl-ACP synthase compare
BWI76_RS00440 +0.6 1.2 CopG family transcriptional regulator compare
BWI76_RS12670 +0.6 1.0 DNA polymerase V subunit UmuD compare
BWI76_RS06735 +0.6 1.4 50S ribosomal protein L31 compare
BWI76_RS25300 +0.6 1.7 hybrid sensor histidine kinase/response regulator compare
BWI76_RS16140 +0.6 1.1 3-oxoadipate CoA-transferase compare
BWI76_RS02420 +0.6 2.0 entericidin EcnAB compare
BWI76_RS17925 +0.6 2.5 peptidoglycan synthase compare
BWI76_RS06670 +0.6 2.7 hypothetical protein compare
BWI76_RS07805 +0.5 2.4 sugar ABC transporter permease compare
BWI76_RS16290 +0.5 1.4 Mal regulon transcriptional regulator MalI compare
BWI76_RS23340 +0.5 1.4 transcriptional regulator compare
BWI76_RS04770 +0.5 3.3 D-alanine--D-alanine ligase compare
BWI76_RS16950 +0.5 1.3 TetR family transcriptional regulator compare
BWI76_RS24180 +0.5 1.1 hypothetical protein compare
BWI76_RS10915 +0.5 3.2 O-acetyl-ADP-ribose deacetylase compare
BWI76_RS08350 +0.5 2.8 carboxylase compare
BWI76_RS15920 +0.5 1.0 hypothetical protein compare
BWI76_RS09320 +0.5 2.0 P2 phage tail completion protein R compare
BWI76_RS04700 +0.5 1.9 acetolactate synthase small subunit compare
BWI76_RS15130 +0.5 2.4 hypothetical protein compare
BWI76_RS14200 +0.5 2.7 protocatechuate 4,5-dioxygenase compare
BWI76_RS15305 +0.5 3.1 O-acetylserine/cysteine exporter compare
BWI76_RS20810 +0.5 1.9 ethanolamine utilization cobalamin adenosyltransferase compare
BWI76_RS16040 +0.5 1.5 biotin-independent malonate decarboxylase subunit gamma compare
BWI76_RS24900 +0.5 1.0 DeoR family transcriptional regulator compare
BWI76_RS07465 +0.5 1.6 TetR family transcriptional regulator compare
BWI76_RS22975 +0.5 1.2 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
BWI76_RS21165 +0.5 1.1 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS15205 +0.5 2.1 succinate-semialdehyde dehydrogenase compare
BWI76_RS21570 +0.5 1.3 RnfH family protein compare
BWI76_RS25920 +0.5 1.0 peptidylprolyl isomerase compare
BWI76_RS08855 +0.5 3.1 endonuclease/exonuclease/phosphatase compare
BWI76_RS12650 +0.5 3.1 membrane protein compare
BWI76_RS03815 +0.5 1.6 hypothetical protein compare
BWI76_RS07460 +0.5 1.7 hypothetical protein compare
BWI76_RS13480 +0.5 1.1 XRE family transcriptional regulator compare
BWI76_RS21565 +0.5 0.9 outer membrane protein assembly factor BamE compare
BWI76_RS12420 +0.5 0.9 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS06975 +0.5 1.7 DNA-binding transcriptional activator AllS compare
BWI76_RS26505 +0.5 1.5 nickel ABC transporter permease subunit NikB compare
BWI76_RS02655 +0.5 1.3 hypothetical protein compare
BWI76_RS21235 +0.5 0.7 hypothetical protein compare
BWI76_RS19560 +0.5 2.1 beta-1,4-xylanase compare
BWI76_RS24720 +0.5 1.1 hypothetical protein compare
BWI76_RS10560 +0.5 1.8 gamma-glutamyltransferase compare
BWI76_RS24635 +0.5 2.3 autoinducer-2 (AI-2) modifying protein LsrG compare
BWI76_RS15725 +0.5 1.0 hypothetical protein compare
BWI76_RS09680 +0.5 2.5 dimethyl sulfoxide reductase subunit A compare
BWI76_RS27745 +0.5 1.8 PTS sugar transporter subunit IIB compare
BWI76_RS17565 +0.5 0.7 hypothetical protein compare
BWI76_RS20605 +0.5 1.4 purine-nucleoside phosphorylase compare
BWI76_RS02245 +0.5 2.5 hypothetical protein compare
BWI76_RS16690 +0.5 1.3 peptide ABC transporter permease compare
BWI76_RS24405 +0.5 2.1 hypothetical protein compare
BWI76_RS08425 +0.5 2.6 succinyl-CoA ligase subunit beta compare
BWI76_RS16775 +0.5 1.7 malate/lactate/ureidoglycolate dehydrogenase compare
BWI76_RS19885 +0.5 1.5 multidrug ABC transporter permease/ATP-binding protein conserved
BWI76_RS06180 +0.5 1.5 hypothetical protein compare
BWI76_RS08395 +0.5 1.2 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS20595 +0.5 2.9 LysR family transcriptional regulator compare
BWI76_RS23760 +0.5 1.0 tRNA-Gly compare
BWI76_RS16895 +0.5 1.1 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS17080 +0.5 2.8 hypothetical protein compare
BWI76_RS21325 +0.5 1.1 hypothetical protein compare
BWI76_RS11455 +0.5 1.8 AraC family transcriptional regulator compare
BWI76_RS11265 +0.5 1.9 peptidase T compare
BWI76_RS09065 +0.5 1.4 sugar phosphatase SupH compare
BWI76_RS14010 +0.5 2.5 SDR family oxidoreductase compare
BWI76_RS11260 +0.5 1.2 hypothetical protein compare
BWI76_RS23690 +0.5 0.7 putative glyoxalase/bleomycin resistance protein/dioxygenase compare
BWI76_RS09315 +0.5 1.3 hypothetical protein compare
BWI76_RS12600 +0.5 1.5 MFS transporter compare
BWI76_RS22120 +0.5 3.5 glutamate--cysteine ligase compare
BWI76_RS24390 +0.5 0.6 hypothetical protein compare
BWI76_RS13195 +0.5 1.4 glutamate dehydrogenase compare
BWI76_RS24820 +0.5 1.5 glycerate 2-kinase compare
BWI76_RS17765 +0.4 1.5 hypothetical protein compare
BWI76_RS16645 +0.4 1.6 DeoR family transcriptional regulator compare
BWI76_RS06745 +0.4 1.4 N-acetyltransferase GCN5 compare
BWI76_RS17405 +0.4 2.0 cation transport regulator compare
BWI76_RS10565 +0.4 1.8 sugar isomerase compare
BWI76_RS25195 +0.4 2.5 maltose metabolism regulator compare
BWI76_RS11020 +0.4 2.0 oxidoreductase family, NAD-binding protein compare
BWI76_RS26875 +0.4 1.4 dipeptide ABC transporter permease DppC compare
BWI76_RS25630 +0.4 1.5 hypothetical protein compare
BWI76_RS06625 +0.4 1.9 acyl-CoA thioesterase II compare
BWI76_RS26235 +0.4 1.6 gluconate transporter compare
BWI76_RS11185 +0.4 2.3 ligand-gated channel protein compare
BWI76_RS08615 +0.4 2.1 galactokinase compare
BWI76_RS04595 +0.4 2.0 DNA-binding transcriptional regulator AraC compare
BWI76_RS24220 +0.4 2.1 short chain dehydrogenase compare
BWI76_RS08765 +0.4 1.3 8-amino-7-oxononanoate synthase compare
BWI76_RS06785 +0.4 2.0 DNA-binding transcriptional repressor AcrR compare
BWI76_RS11520 +0.4 0.8 hypothetical protein compare
BWI76_RS23050 +0.4 1.0 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS01070 +0.4 1.9 thiol reductase thioredoxin compare
BWI76_RS11700 +0.4 0.8 hypothetical protein compare
BWI76_RS22640 +0.4 1.0 hypothetical protein compare
BWI76_RS27780 +0.4 1.4 hypothetical protein compare
BWI76_RS18065 +0.4 1.1 DNA polymerase III subunit theta compare
BWI76_RS10770 +0.4 1.7 pyrimidine utilization protein C compare
BWI76_RS18080 +0.4 1.3 protein YebE compare
BWI76_RS19280 +0.4 1.2 U32 family peptidase compare
BWI76_RS04060 +0.4 1.3 hypothetical protein compare
BWI76_RS17195 +0.4 1.2 hypothetical protein compare
BWI76_RS22310 +0.4 1.7 hydrogenase 3 small subunit compare
BWI76_RS21290 +0.4 1.2 DNA-binding transcriptional regulator compare
BWI76_RS23875 +0.4 1.7 glycine cleavage system protein H compare
BWI76_RS16275 +0.4 1.5 fumarate hydratase FumA compare
BWI76_RS12735 +0.4 1.9 phage repressor protein compare
BWI76_RS24080 +0.4 0.6 DUF179 domain-containing protein compare
BWI76_RS13590 +0.4 0.6 hypothetical protein compare
BWI76_RS17875 +0.4 1.2 L-serine ammonia-lyase compare
BWI76_RS22720 +0.4 2.9 subtype I-E CRISPR-associated endonuclease Cas1 compare
BWI76_RS08840 +0.4 0.9 hypothetical protein compare
BWI76_RS00610 +0.4 2.0 MFS transporter compare
BWI76_RS13490 +0.4 1.2 pyrimidine-specific ribonucleoside hydrolase RihA compare
BWI76_RS24525 +0.4 1.9 urease accessory protein UreG compare
BWI76_RS17855 +0.4 1.7 alginate lyase compare
BWI76_RS20280 +0.4 1.3 phosphodiesterase compare
BWI76_RS18610 +0.4 1.8 transcriptional regulator LysR compare
BWI76_RS10540 +0.4 2.5 allantoinase compare
BWI76_RS02800 +0.4 1.0 ABC transporter compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms