Experiment set10IT076 for Cupriavidus basilensis FW507-4G11

Compare to:

Disodium Glutarate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.3 -3.9 5,10-methylenetetrahydrofolate reductase compare
RR42_RS16275 -5.4 -3.7 membrane protein compare
RR42_RS19005 -5.4 -5.2 3-dehydroquinate synthase compare
RR42_RS16255 -5.2 -6.2 sulfate adenylyltransferase compare
RR42_RS16250 -5.0 -6.0 sulfate adenylyltransferase compare
RR42_RS18305 -5.0 -3.4 anthranilate phosphoribosyltransferase compare
RR42_RS30655 -4.9 -5.8 LysR family transcriptional regulator compare
RR42_RS14365 -4.6 -2.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS05860 -4.5 -3.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS01160 -4.5 -11.1 homoserine O-acetyltransferase compare
RR42_RS24605 -4.4 -8.6 TetR family transcriptional regulator compare
RR42_RS12175 -4.3 -11.8 malate synthase compare
RR42_RS06485 -4.2 -8.2 chorismate synthase compare
RR42_RS15400 -4.0 -5.9 acyl-CoA dehydrogenase compare
RR42_RS16245 -4.0 -3.8 uroporphyrin-III methyltransferase compare
RR42_RS30660 -3.9 -9.2 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS16270 -3.8 -8.9 sulfite reductase compare
RR42_RS04475 -3.8 -9.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS20375 -3.7 -5.6 transcriptional regulator compare
RR42_RS18820 -3.6 -5.5 cytochrome B compare
RR42_RS09015 -3.6 -3.4 trigger factor compare
RR42_RS14385 -3.5 -5.9 3-isopropylmalate dehydrogenase compare
RR42_RS07425 -3.5 -8.8 IclR family transcriptional regulator compare
RR42_RS06095 -3.5 -4.8 hypothetical protein compare
RR42_RS16265 -3.5 -3.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS19090 -3.4 -2.1 cytochrome C compare
RR42_RS18295 -3.3 -11.2 anthranilate synthase component I compare
RR42_RS07555 -3.3 -2.3 potassium transporter Kup compare
RR42_RS01290 -3.3 -7.8 thiamine biosynthesis protein ThiC compare
RR42_RS12050 -3.2 -8.3 DNA polymerase compare
RR42_RS14360 -3.2 -1.7 tryptophan synthase subunit alpha compare
RR42_RS14400 -3.2 -4.3 isopropylmalate isomerase compare
RR42_RS07365 -3.2 -3.0 pyruvate dehydrogenase compare
RR42_RS01720 -3.1 -2.1 membrane protein compare
RR42_RS00875 -3.1 -11.5 isocitrate dehydrogenase compare
RR42_RS16280 -3.1 -6.8 transcriptional regulator compare
RR42_RS01795 -3.0 -18.5 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS14965 -3.0 -5.6 hypothetical protein compare
RR42_RS29255 -3.0 -5.9 GTP cyclohydrolase compare
RR42_RS14390 -2.9 -3.9 3-isopropylmalate dehydratase compare
RR42_RS06395 -2.8 -7.9 TetR family transcriptional regulator compare
RR42_RS05945 -2.8 -2.5 thioredoxin compare
RR42_RS00715 -2.8 -1.9 ferritin compare
RR42_RS28885 -2.8 -5.6 membrane protein compare
RR42_RS12040 -2.8 -11.2 MFS transporter compare
RR42_RS18825 -2.8 -3.2 ubiquinol-cytochrome C reductase compare
RR42_RS05420 -2.8 -2.4 membrane protein compare
RR42_RS14320 -2.7 -4.7 O-succinylhomoserine sulfhydrylase compare
RR42_RS15470 -2.7 -1.3 biopolymer transporter ExbD compare
RR42_RS02810 -2.7 -2.3 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS15455 -2.7 -5.0 membrane protein compare
RR42_RS18990 -2.6 -15.4 glutamate synthase compare
RR42_RS16240 -2.6 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS17620 -2.5 -4.6 phosphatidylglycerophosphatase compare
RR42_RS33575 -2.5 -2.2 hypothetical protein compare
RR42_RS18815 -2.5 -4.3 cytochrome C compare
RR42_RS18850 -2.5 -1.7 preprotein translocase subunit TatC compare
RR42_RS33650 -2.5 -2.2 IclR family transcriptional regulator compare
RR42_RS07285 -2.5 -6.2 ABC transporter substrate-binding protein compare
RR42_RS02775 -2.5 -2.5 molecular chaperone SurA compare
RR42_RS18140 -2.4 -1.0 MarR family transcriptional regulator compare
RR42_RS20380 -2.4 -7.5 histidine kinase compare
RR42_RS02060 -2.4 -6.7 nucleotide-binding protein compare
RR42_RS26905 -2.3 -4.8 methylcrotonoyl-CoA carboxylase compare
RR42_RS17720 -2.3 -2.2 sugar kinase compare
RR42_RS01185 -2.2 -12.8 muropeptide transporter compare
RR42_RS25200 -2.2 -4.9 TetR family transcriptional regulator compare
RR42_RS12550 -2.2 -2.6 hypothetical protein compare
RR42_RS08210 -2.2 -1.1 hypothetical protein compare
RR42_RS18930 -2.1 -5.5 BolA family transcriptional regulator compare
RR42_RS18945 -2.1 -4.8 toluene tolerance protein compare
RR42_RS17930 -2.1 -3.5 RNA pyrophosphohydrolase compare
RR42_RS16260 -2.1 -1.7 phosphoadenosine phosphosulfate reductase compare
RR42_RS18855 -2.1 -2.0 preprotein translocase compare
RR42_RS18725 -2.0 -2.3 hypothetical protein compare
RR42_RS15035 -2.0 -3.6 ZIP zinc transporter compare
RR42_RS23685 -1.9 -6.2 transcriptional regulator compare
RR42_RS18985 -1.9 -5.2 glutamate synthase compare
RR42_RS04700 -1.9 -1.3 ribonuclease G compare
RR42_RS10920 -1.9 -2.0 hypothetical protein compare
RR42_RS30310 -1.9 -2.3 signal transduction protein compare
RR42_RS02705 -1.9 -2.1 Holliday junction DNA helicase RuvA compare
RR42_RS04535 -1.8 -2.6 cysteine synthase compare
RR42_RS34815 -1.8 -2.2 diguanylate cyclase compare
RR42_RS18300 -1.8 -2.5 anthranilate synthase subunit II compare
RR42_RS04460 -1.8 -4.0 chorismate mutase compare
RR42_RS18270 -1.7 -2.2 murein transglycosylase compare
RR42_RS34520 -1.7 -1.2 transposase compare
RR42_RS02500 -1.7 -1.9 TetR family transcriptional regulator compare
RR42_RS11225 -1.7 -2.9 peptide ABC transporter permease compare
RR42_RS05920 -1.6 -3.2 HrcA family transcriptional regulator compare
RR42_RS20205 -1.6 -2.0 chromosome partitioning protein compare
RR42_RS32710 -1.6 -2.0 hypothetical protein compare
RR42_RS05425 -1.6 -5.7 membrane protein compare
RR42_RS17105 -1.6 -9.2 Clp protease ClpX compare
RR42_RS36170 -1.6 -2.2 hypothetical protein compare
RR42_RS15475 -1.6 -4.0 protein tolQ compare
RR42_RS24040 -1.6 -3.4 hypothetical protein compare
RR42_RS01845 -1.6 -1.7 glycerol-3-phosphate dehydrogenase compare
RR42_RS10365 -1.6 -1.8 ABC transporter compare
RR42_RS00250 -1.5 -4.1 GntR family transcriptional regulator compare
RR42_RS12015 -1.5 -1.4 dihydrolipoamide acyltransferase compare
RR42_RS06875 -1.5 -1.3 hypothetical protein compare
RR42_RS03385 -1.5 -4.3 sugar kinase compare
RR42_RS30640 -1.5 -4.6 DNA mismatch repair protein MutT compare
RR42_RS36700 -1.5 -5.0 multidrug transporter compare
RR42_RS34215 -1.5 -1.2 ferredoxin compare
RR42_RS19900 -1.5 -1.3 MerR family transcriptional regulator compare
RR42_RS00380 -1.4 -7.2 GntR family transcriptional regulator compare
RR42_RS27550 -1.4 -1.0 hypothetical protein compare
RR42_RS17645 -1.4 -4.6 shikimate dehydrogenase compare
RR42_RS17880 -1.4 -1.2 hypothetical protein compare
RR42_RS25845 -1.4 -7.3 isocitrate lyase compare
RR42_RS19065 -1.4 -4.4 transcriptional regulator compare
RR42_RS33070 -1.3 -2.6 oxidoreductase compare
RR42_RS31385 -1.3 -5.2 GntR family transcriptional regulator compare
RR42_RS18965 -1.3 -8.0 ABC transporter permease compare
RR42_RS32445 -1.3 -1.3 shikimate dehydrogenase compare
RR42_RS11795 -1.3 -2.3 PEP synthetase regulatory protein compare
RR42_RS04880 -1.3 -5.2 coproporphyrinogen III oxidase compare
RR42_RS16220 -1.3 -1.1 DNA polymerase III subunit chi compare
RR42_RS18970 -1.3 -8.0 toluene ABC transporter ATP-binding protein compare
RR42_RS10465 -1.3 -1.5 hypothetical protein compare
RR42_RS01380 -1.3 -2.1 membrane protein compare
RR42_RS15460 -1.3 -3.2 translocation protein TolB compare
RR42_RS30930 -1.2 -3.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
RR42_RS21690 -1.2 -0.9 acetyltransferase compare
RR42_RS26455 -1.2 -1.1 amino acid ABC transporter ATP-binding protein compare
RR42_RS17555 -1.2 -1.3 hypothetical protein compare
RR42_RS03360 -1.2 -2.7 fructose ABC transporter, ATPase component (FrcA) (from data) compare
RR42_RS08340 -1.2 -1.7 phage tail protein compare
RR42_RS28955 -1.2 -3.3 transcriptional regulator compare
RR42_RS11770 -1.2 -1.6 cyclase compare
RR42_RS20210 -1.2 -2.1 16S rRNA methyltransferase compare
RR42_RS27625 -1.2 -2.3 TetR family transcriptional regulator compare
RR42_RS35995 -1.2 -2.5 membrane protein compare
RR42_RS08715 -1.2 -2.4 LysR family transcriptional regulator compare
RR42_RS05485 -1.2 -2.1 polynucleotide phosphorylase/polyadenylase compare
RR42_RS21295 -1.2 -2.1 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS14080 -1.2 -5.2 RNA polymerase sigma factor RpoE compare
RR42_RS26900 -1.1 -0.8 enoyl-CoA hydratase compare
RR42_RS26935 -1.1 -2.8 farnesyl-diphosphate farnesyltransferase compare
RR42_RS21435 -1.1 -1.7 hypothetical protein compare
RR42_RS09500 -1.1 -3.6 dehydrogenase compare
RR42_RS00745 -1.1 -3.7 IclR family transcriptional regulator compare
RR42_RS00830 -1.1 -4.6 cell division protein FtsN compare
RR42_RS17875 -1.1 -4.0 histidine kinase compare
RR42_RS16910 -1.1 -1.0 histidine utilization protein HutD compare
RR42_RS31020 -1.1 -2.2 hypothetical protein compare
RR42_RS21595 -1.1 -3.9 IclR family transcriptional regulator compare
RR42_RS13015 -1.1 -4.3 fatty acid hydroxylase compare
RR42_RS15380 -1.1 -3.1 kynurenine formamidase compare
RR42_RS18430 -1.1 -1.7 prevent-host-death protein compare
RR42_RS05990 -1.1 -3.8 aromatic amino acid aminotransferase compare
RR42_RS08725 -1.1 -2.1 ketosteroid isomerase compare
RR42_RS34650 -1.0 -2.5 LacI family transcriptional regulator compare
RR42_RS06240 -1.0 -1.2 tryptophan--tRNA ligase compare
RR42_RS32170 -1.0 -2.8 lysine transporter LysE compare
RR42_RS21470 -1.0 -1.0 hypothetical protein compare
RR42_RS15745 -1.0 -3.8 group1 glycosyl transferase compare
RR42_RS01915 -1.0 -3.0 cytochrome C oxidase subunit I compare
RR42_RS09290 -1.0 -1.0 hypothetical protein compare
RR42_RS33250 -1.0 -3.9 tyrosine protein kinase compare
RR42_RS07360 -1.0 -1.6 ATPase compare
RR42_RS18960 -1.0 -6.0 ABC transporter substrate-binding protein compare
RR42_RS14075 -1.0 -3.5 anti-sigma factor compare
RR42_RS17050 -1.0 -3.0 phosphoribosylglycinamide formyltransferase compare
RR42_RS16195 -1.0 -1.5 haloacid dehalogenase compare
RR42_RS15755 -1.0 -1.7 acetyltransferase compare
RR42_RS06250 -1.0 -0.9 dihydrodipicolinate synthase compare
RR42_RS04560 -1.0 -1.6 methionine ABC transporter permease compare
RR42_RS08120 -1.0 -2.0 hypothetical protein compare
RR42_RS03370 -1.0 -1.9 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS27060 -1.0 -1.7 cation transporter compare
RR42_RS01255 -1.0 -4.7 lauroyl acyltransferase compare
RR42_RS11280 -1.0 -0.9 phenylacetic acid degradation protein compare
RR42_RS03390 -1.0 -2.5 ABC transporter substrate-binding protein compare
RR42_RS00065 -1.0 -2.8 hypothetical protein compare
RR42_RS06460 -1.0 -2.7 alpha/beta hydrolase compare
RR42_RS32830 -1.0 -1.3 hypothetical protein compare
RR42_RS08025 -1.0 -1.1 phage Gp37Gp68 compare
RR42_RS14220 -1.0 -1.5 ferredoxin-NADP reductase compare
RR42_RS10260 -1.0 -2.2 acetyl-CoA acetyltransferase compare
RR42_RS02860 -1.0 -1.7 hypothetical protein compare
RR42_RS02210 -1.0 -1.2 succinate dehydrogenase compare
RR42_RS34905 -1.0 -2.0 enoyl-CoA hydratase compare
RR42_RS33765 -1.0 -3.3 cobalt chelatase compare
RR42_RS08855 -1.0 -1.1 hypothetical protein compare
RR42_RS35295 -1.0 -1.4 diguanylate cyclase compare
RR42_RS01875 -1.0 -3.7 cytochrome C oxidase subunit II compare
RR42_RS12180 -1.0 -1.8 haloacid dehalogenase compare
RR42_RS15565 -1.0 -3.4 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
RR42_RS03105 -1.0 -4.2 integral membrane protein compare
RR42_RS07060 -0.9 -2.0 hypothetical protein compare
RR42_RS21275 -0.9 -3.7 carnitine dehydratase compare
RR42_RS15465 -0.9 -1.5 TonB-dependent receptor compare
RR42_RS31435 -0.9 -0.9 hypothetical protein compare
RR42_RS25015 -0.9 -1.4 gluconolactonase compare
RR42_RS30055 -0.9 -2.2 hypothetical protein compare
RR42_RS12860 -0.9 -1.5 pseudouridine synthase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Disodium Glutarate in Cupriavidus basilensis FW507-4G11

For carbon source Disodium Glutarate across organisms