Experiment set10IT075 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS01210 -5.2 -3.7 tyrosine recombinase XerC compare
BWI76_RS09660 -4.5 -3.8 DNA translocase FtsK compare
BWI76_RS23920 -4.3 -7.1 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS23240 -4.1 -4.8 exonuclease V subunit gamma compare
BWI76_RS23230 -3.8 -3.7 exodeoxyribonuclease V subunit beta compare
BWI76_RS18940 -3.6 -7.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS23360 -3.6 -3.3 diaminopimelate decarboxylase compare
BWI76_RS24400 -3.5 -7.6 outer membrane channel protein TolC compare
BWI76_RS09760 -3.5 -6.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS20355 -3.3 -4.6 colicin V production protein compare
BWI76_RS26570 -3.3 -3.8 anion permease compare
BWI76_RS20435 -3.3 -1.7 chorismate synthase compare
BWI76_RS01325 -3.2 -3.8 twin-arginine translocase subunit TatB compare
BWI76_RS25215 -3.1 -8.0 phospholipid-binding protein MlaC compare
BWI76_RS04160 -3.1 -7.5 phosphoserine phosphatase compare
BWI76_RS04715 -3.1 -3.0 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS00400 -3.1 -2.0 glutamine synthetase compare
BWI76_RS09970 -3.1 -5.3 porin OmpA compare
BWI76_RS20965 -3.0 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS09755 -3.0 -6.7 phosphoserine transaminase compare
BWI76_RS18950 -3.0 -5.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS20895 -3.0 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS21475 -2.8 -6.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS05840 -2.8 -6.7 glutamate 5-kinase compare
BWI76_RS26405 -2.8 -2.1 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS07065 -2.8 -8.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS18935 -2.7 -5.4 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18920 -2.7 -3.9 ATP phosphoribosyltransferase compare
BWI76_RS04470 -2.7 -10.2 carbamoyl phosphate synthase large subunit compare
BWI76_RS01615 -2.6 -9.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS21070 -2.5 -2.6 outer membrane protein assembly factor BamB compare
BWI76_RS04645 -2.5 -5.2 3-dehydroquinase compare
BWI76_RS21310 -2.4 -1.6 DNA repair protein RecO compare
BWI76_RS23480 -2.4 -11.3 EAL domain-containing protein compare
BWI76_RS26085 -2.4 -1.8 3-dehydroquinate synthase compare
BWI76_RS15825 -2.4 -3.6 hypothetical protein compare
BWI76_RS25225 -2.4 -4.2 ABC transporter permease compare
BWI76_RS06780 -2.4 -6.9 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS26665 -2.3 -3.4 DNA-binding response regulator compare
BWI76_RS18955 -2.3 -5.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS23365 -2.3 -7.2 LysR family transcriptional regulator compare
BWI76_RS25230 -2.3 -6.0 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS18925 -2.2 -8.5 histidinol dehydrogenase compare
BWI76_RS21265 -2.2 -10.8 phosphoribosylformylglycinamidine synthase compare
BWI76_RS27430 -2.2 -1.6 (p)ppGpp synthetase compare
BWI76_RS05835 -2.2 -3.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS07725 -2.1 -1.1 iron-enterobactin transporter permease compare
BWI76_RS02410 -2.1 -2.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS06775 -2.1 -11.2 multidrug efflux RND transporter permease subunit compare
BWI76_RS20475 -2.0 -4.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS11610 -2.0 -2.8 glutamate dehydrogenase compare
BWI76_RS15835 -1.9 -1.4 hypothetical protein compare
BWI76_RS04530 -1.9 -1.8 peptidylprolyl isomerase SurA compare
BWI76_RS04255 -1.9 -6.3 threonine synthase compare
BWI76_RS18930 -1.9 -5.5 histidinol-phosphate transaminase compare
BWI76_RS14770 -1.9 -1.9 PTS IIA 2 domain protein compare
BWI76_RS25220 -1.9 -3.1 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS20350 -1.8 -8.0 amidophosphoribosyltransferase compare
BWI76_RS07730 -1.7 -1.6 iron-enterobactin transporter membrane protein compare
BWI76_RS02580 -1.7 -1.8 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS01610 -1.7 -4.2 phosphoribosylamine--glycine ligase compare
BWI76_RS04250 -1.7 -5.6 homoserine kinase compare
BWI76_RS09640 -1.7 -3.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS26395 -1.7 -3.6 cell division protein FtsE compare
BWI76_RS27305 -1.7 -5.7 glycosyl transferase compare
BWI76_RS15115 -1.7 -6.0 MFS transporter compare
BWI76_RS18360 -1.7 -2.3 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS07070 -1.7 -2.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS27310 -1.7 -6.0 glycosyltransferase compare
BWI76_RS00440 -1.7 -1.6 CopG family transcriptional regulator compare
BWI76_RS04465 -1.6 -3.3 carbamoyl-phosphate synthase small subunit compare
BWI76_RS08385 -1.6 -3.6 citrate (Si)-synthase compare
BWI76_RS02995 -1.6 -5.5 aspartate carbamoyltransferase compare
BWI76_RS06475 -1.6 -1.5 protoheme IX farnesyltransferase compare
BWI76_RS06770 -1.6 -8.0 Hha toxicity attenuator compare
BWI76_RS02725 -1.6 -1.3 HxlR family transcriptional regulator compare
BWI76_RS18135 -1.6 -3.3 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS02530 -1.6 -1.8 tRNA dimethylallyltransferase compare
BWI76_RS27290 -1.5 -6.4 hypothetical protein compare
BWI76_RS25645 -1.5 -5.7 shikimate dehydrogenase compare
BWI76_RS08605 -1.5 -2.4 phosphoglyceromutase compare
BWI76_RS18130 -1.5 -3.3 zinc ABC transporter substrate-binding protein compare
BWI76_RS00345 -1.5 -2.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS00845 -1.5 -6.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS17720 -1.5 -1.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS25505 -1.5 -6.7 RNase E specificity factor CsrD compare
BWI76_RS23220 -1.5 -4.4 amino-acid N-acetyltransferase compare
BWI76_RS19805 -1.5 -2.1 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS08525 -1.5 -1.5 colicin transporter compare
BWI76_RS26775 -1.5 -3.7 endo-1,4-D-glucanase compare
BWI76_RS08500 -1.5 -2.9 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS03010 -1.5 -6.0 ornithine carbamoyltransferase compare
BWI76_RS00975 -1.5 -8.4 dihydroxy-acid dehydratase compare
BWI76_RS00835 -1.4 -9.0 phosphoenolpyruvate carboxylase compare
BWI76_RS04245 -1.4 -8.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS11900 -1.4 -1.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS15660 -1.4 -1.5 hypothetical protein compare
BWI76_RS18140 -1.4 -3.6 zinc ABC transporter permease compare
BWI76_RS21480 -1.4 -6.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS19010 -1.4 -3.3 polysaccharide pyruvyl transferase yvff compare
BWI76_RS25115 -1.4 -4.3 argininosuccinate synthase compare
BWI76_RS05260 -1.4 -1.5 chaperone compare
BWI76_RS09635 -1.3 -2.6 amino acid ABC transporter ATP-binding protein compare
BWI76_RS25335 -1.3 -3.6 stringent starvation protein A compare
BWI76_RS27440 -1.3 -3.3 DNA helicase RecG compare
BWI76_RS26670 -1.3 -5.7 two-component sensor histidine kinase compare
BWI76_RS16965 -1.3 -3.3 murein lipoprotein compare
BWI76_RS00805 -1.3 -2.3 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS21350 -1.3 -1.6 anti-RNA polymerase sigma factor SigE compare
BWI76_RS06765 -1.3 -3.5 transcriptional regulator compare
BWI76_RS15640 -1.3 -4.5 hypothetical protein compare
BWI76_RS00720 -1.2 -2.4 DNA-binding response regulator compare
BWI76_RS23265 -1.2 -2.9 hypothetical protein compare
BWI76_RS17155 -1.2 -1.5 hypothetical protein compare
BWI76_RS23970 -1.2 -2.5 mechanosensitive ion channel protein MscS compare
BWI76_RS12295 -1.2 -2.4 hypothetical protein compare
BWI76_RS23320 -1.2 -1.4 hypothetical protein compare
BWI76_RS06490 -1.1 -3.2 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS00850 -1.1 -5.3 acetylglutamate kinase compare
BWI76_RS15605 -1.1 -1.4 hypothetical protein compare
BWI76_RS00875 -1.1 -4.3 DNA-binding transcriptional regulator FabR compare
BWI76_RS23015 -1.1 -1.5 cobalt transporter ATP-binding subunit compare
BWI76_RS16000 -1.1 -1.4 multidrug transporter subunit MdtI compare
BWI76_RS01090 -1.1 -3.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS18125 -1.1 -2.6 murein DD-endopeptidase MepM compare
BWI76_RS24600 -1.1 -4.0 dihydroxyacetone kinase compare
BWI76_RS24280 -1.1 -3.1 biopolymer transporter ExbB compare
BWI76_RS05450 -1.1 -1.1 ribonuclease HI compare
BWI76_RS11580 -1.1 -2.1 L-asparaginase 1 compare
BWI76_RS21450 -1.1 -2.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS24120 -1.1 -2.5 YggW family oxidoreductase compare
BWI76_RS04240 -1.1 -1.9 thr operon leader peptide compare
BWI76_RS19240 -1.1 -1.3 ABC transporter substrate-binding protein compare
BWI76_RS01790 -1.1 -5.3 lysine-sensitive aspartokinase 3 compare
BWI76_RS13645 -1.0 -1.9 N-hydroxyarylamine O-acetyltransferase compare
BWI76_RS00355 -1.0 -1.5 DNA polymerase I compare
BWI76_RS12950 -1.0 -2.3 acriflavin resistance protein AcrA compare
BWI76_RS07985 -1.0 -1.0 fluoride ion transporter CrcB compare
BWI76_RS26000 -1.0 -2.8 aspartate aminotransferase family protein compare
BWI76_RS06295 -1.0 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS23485 -1.0 -4.6 hypothetical protein compare
BWI76_RS15110 -1.0 -6.4 putative excinuclease ABC subunit A compare
BWI76_RS04670 -1.0 -3.8 3-isopropylmalate dehydratase large subunit compare
BWI76_RS19845 -1.0 -2.6 phosphatase compare
BWI76_RS10955 -1.0 -1.7 hypothetical protein compare
BWI76_RS01795 -1.0 -1.7 hypothetical protein compare
BWI76_RS11965 -1.0 -2.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS17190 -1.0 -2.3 TonB system transport protein TonB compare
BWI76_RS12090 -1.0 -1.2 HNH endonuclease compare
BWI76_RS24945 -1.0 -0.9 glutamine amidotransferase compare
BWI76_RS05810 -1.0 -1.0 hypothetical protein compare
BWI76_RS15705 -1.0 -3.7 putative holin protein compare
BWI76_RS04685 -1.0 -5.4 putative leucine operon leader peptide compare
BWI76_RS12665 -1.0 -1.5 hypothetical protein compare
BWI76_RS01205 -1.0 -1.7 DUF484 family protein compare
BWI76_RS17780 -1.0 -3.4 septum formation inhibitor compare
BWI76_RS09615 -1.0 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS12375 -1.0 -3.0 DNA-invertase hin compare
BWI76_RS00990 -1.0 -5.5 ketol-acid reductoisomerase compare
BWI76_RS24240 -1.0 -1.5 hypothetical protein compare
BWI76_RS11520 -0.9 -1.0 hypothetical protein compare
BWI76_RS04665 -0.9 -6.9 3-isopropylmalate dehydratase small subunit compare
BWI76_RS16715 -0.9 -5.8 hypothetical protein compare
BWI76_RS23885 -0.9 -1.2 2-octaprenylphenol hydroxylase compare
BWI76_RS11255 -0.9 -1.1 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS11430 -0.9 -0.9 lipoprotein compare
BWI76_RS04675 -0.9 -2.9 3-isopropylmalate dehydrogenase compare
BWI76_RS11035 -0.9 -2.0 putative LysR-family transcriptional regulator compare
BWI76_RS19685 -0.9 -3.2 lysine transporter compare
BWI76_RS10035 -0.9 -1.3 hypothetical protein compare
BWI76_RS07740 -0.9 -1.3 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS05010 -0.9 -2.7 tRNA glutamyl-Q synthetase compare
BWI76_RS21000 -0.9 -2.2 exopolyphosphatase compare
BWI76_RS24595 -0.9 -2.8 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS24605 -0.9 -5.5 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS00855 -0.9 -4.5 argininosuccinate lyase compare
BWI76_RS23820 -0.9 -2.2 flavodoxin FldB compare
BWI76_RS17300 -0.9 -1.3 tRNA-Tyr compare
BWI76_RS01330 -0.9 -1.8 twin-arginine translocase subunit TatC compare
BWI76_RS15645 -0.9 -5.2 gp6 compare
BWI76_RS23455 -0.9 -1.6 Na(+)-translocating NADH-quinone reductase subunit E compare
BWI76_RS23030 -0.9 -1.6 cobalamin biosynthesis protein CbiM compare
BWI76_RS16215 -0.9 -3.2 hypothetical protein compare
BWI76_RS05350 -0.9 -3.8 Rcs stress response system protein RcsF compare
BWI76_RS13400 -0.9 -2.1 GntR family transcriptional regulator compare
BWI76_RS00965 -0.9 -0.8 acetolactate synthase 2 small subunit compare
BWI76_RS22645 -0.9 -2.3 RNA polymerase sigma factor RpoS compare
BWI76_RS01065 -0.9 -1.9 ATP-dependent RNA helicase RhlB compare
BWI76_RS09870 -0.9 -2.3 aromatic amino acid aminotransferase compare
BWI76_RS01220 -0.9 -3.5 DNA-dependent helicase II compare
BWI76_RS17290 -0.9 -1.9 formyltetrahydrofolate deformylase compare
BWI76_RS03045 -0.8 -0.9 hypothetical protein compare
BWI76_RS06530 -0.8 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS00970 -0.8 -1.4 branched chain amino acid aminotransferase compare
BWI76_RS02810 -0.8 -2.2 sugar ABC transporter permease YjfF compare
BWI76_RS20490 -0.8 -1.7 hypothetical protein compare
BWI76_RS18710 -0.8 -5.7 GGDEF-domain containing protein compare
BWI76_RS16200 -0.8 -1.9 NAD(P) transhydrogenase subunit beta compare
BWI76_RS12895 -0.8 -2.0 hypothetical protein compare
BWI76_RS08495 -0.8 -3.5 cytochrome bd-I ubiquinol oxidase subunit I compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms