Experiment set10IT075 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS20995 +4.6 31.8 RNA degradosome polyphosphate kinase compare
BWI76_RS00140 +4.2 7.6 phosphate transport system regulator PhoU compare
BWI76_RS07465 +4.2 8.8 TetR family transcriptional regulator compare
BWI76_RS24075 +3.3 13.2 glutathione synthase compare
BWI76_RS22120 +3.3 25.6 glutamate--cysteine ligase compare
BWI76_RS27675 +3.3 15.7 EmrB/QacA family drug resistance transporter compare
BWI76_RS20640 +3.2 13.7 cysteine synthase A compare
BWI76_RS26685 +3.1 15.2 glutathione-disulfide reductase compare
BWI76_RS01070 +2.9 16.4 thiol reductase thioredoxin compare
BWI76_RS05440 +1.9 8.7 hydroxyacylglutathione hydrolase compare
BWI76_RS09530 +1.8 2.1 hypothetical protein compare
BWI76_RS01890 +1.7 5.1 transcriptional regulator Zur compare
BWI76_RS10305 +1.7 6.4 transposase compare
BWI76_RS26095 +1.7 3.0 shikimate kinase compare
BWI76_RS06785 +1.6 6.9 DNA-binding transcriptional repressor AcrR compare
BWI76_RS16805 +1.5 3.0 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS17915 +1.4 5.6 membrane protein compare
BWI76_RS22815 +1.4 10.1 hybrid sensor histidine kinase/response regulator compare
BWI76_RS06340 +1.4 1.6 hypothetical protein compare
BWI76_RS21075 +1.3 1.4 membrane protein compare
BWI76_RS17910 +1.3 4.5 hypothetical protein compare
BWI76_RS22090 +1.3 1.9 transcriptional regulator compare
BWI76_RS03040 +1.3 2.8 leucyl aminopeptidase compare
BWI76_RS08405 +1.3 3.7 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS05465 +1.2 1.4 amidohydrolase compare
BWI76_RS11250 +1.2 2.7 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS15920 +1.2 2.0 hypothetical protein compare
BWI76_RS26470 +1.2 4.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS00865 +1.2 4.4 DNA-binding transcriptional regulator OxyR compare
BWI76_RS24810 +1.2 1.4 hypothetical protein compare
BWI76_RS19330 +1.2 1.2 HAD family hydrolase compare
BWI76_RS25070 +1.2 1.9 hypothetical protein compare
BWI76_RS04705 +1.2 5.7 DNA-binding transcriptional regulator FruR compare
BWI76_RS05655 +1.1 1.7 hypothetical protein compare
BWI76_RS16360 +1.1 1.8 electron transport complex subunit RsxB compare
BWI76_RS27425 +1.1 2.6 DNA-directed RNA polymerase subunit omega compare
BWI76_RS15095 +1.1 3.3 isochorismatase compare
BWI76_RS06290 +1.1 2.5 ACP phosphodiesterase compare
BWI76_RS18335 +1.1 6.3 DNA-binding response regulator compare
BWI76_RS24950 +1.1 2.6 hypothetical protein compare
BWI76_RS05885 +1.1 3.1 anion permease compare
BWI76_RS04850 +1.0 3.2 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS23670 +1.0 3.0 alkaline phosphatase compare
BWI76_RS11835 +1.0 1.0 putative regulatory protein MarR compare
BWI76_RS22085 +1.0 4.1 L-valine transporter subunit YgaH compare
BWI76_RS05005 +1.0 2.8 polynucleotide adenylyltransferase compare
BWI76_RS25285 +1.0 1.0 HPr family phosphocarrier protein compare
BWI76_RS16955 +1.0 1.6 hypothetical protein compare
BWI76_RS24110 +0.9 1.9 YggU family protein compare
BWI76_RS20785 +0.9 1.2 ethanolamine utilization protein EutJ compare
BWI76_RS24480 +0.9 4.9 undecaprenyl-diphosphatase compare
BWI76_RS13240 +0.9 1.3 hypothetical protein compare
BWI76_RS17080 +0.9 3.1 hypothetical protein compare
BWI76_RS26120 +0.9 2.8 hypothetical protein compare
BWI76_RS23125 +0.9 2.1 propanediol dehydratase small subunit compare
BWI76_RS01585 +0.9 3.5 transcriptional regulator compare
BWI76_RS23520 +0.9 1.6 hypothetical protein compare
BWI76_RS13545 +0.9 1.3 N-acetyltransferase compare
BWI76_RS24925 +0.9 1.5 DnaA initiator-associating protein DiaA compare
BWI76_RS00080 +0.8 2.9 N-acetylmannosamine kinase compare
BWI76_RS21340 +0.8 1.7 SoxR reducing system protein RseC compare
BWI76_RS21105 +0.8 3.2 penicillin-binding protein 1C compare
BWI76_RS22310 +0.8 3.6 hydrogenase 3 small subunit compare
BWI76_RS11700 +0.8 1.3 hypothetical protein compare
BWI76_RS18410 +0.8 2.9 drug/metabolite exporter YedA compare
BWI76_RS04170 +0.8 5.9 trifunctional nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR compare
BWI76_RS16140 +0.8 1.7 3-oxoadipate CoA-transferase compare
BWI76_RS06665 +0.8 2.3 membrane protein compare
BWI76_RS24035 +0.8 1.5 hypothetical protein compare
BWI76_RS09825 +0.8 5.2 envelope biogenesis factor ElyC compare
BWI76_RS26185 +0.8 1.0 thiosulfate sulfurtransferase compare
BWI76_RS15845 +0.8 1.1 hypothetical protein compare
BWI76_RS25380 +0.8 2.2 oxaloacetate decarboxylase subunit beta compare
BWI76_RS08585 +0.8 2.4 nicotinamide riboside transporter PnuC compare
BWI76_RS02655 +0.8 1.6 hypothetical protein compare
BWI76_RS10530 +0.8 1.6 GntR family transcriptional regulator with compare
BWI76_RS26045 +0.8 1.5 nitrite reductase small subunit compare
BWI76_RS20805 +0.7 2.0 phosphate acetyltransferase compare
BWI76_RS09080 +0.7 1.6 molybdopterin-synthase adenylyltransferase MoeB compare
BWI76_RS11770 +0.7 2.5 hypothetical protein compare
BWI76_RS11710 +0.7 2.2 nucleotide excision repair endonuclease compare
BWI76_RS07185 +0.7 1.0 hypothetical protein compare
BWI76_RS06335 +0.7 1.9 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS19865 +0.7 1.6 ecotin compare
BWI76_RS05640 +0.7 2.6 GntR family transcriptional regulator compare
BWI76_RS15775 +0.7 2.0 replication protein compare
BWI76_RS22960 +0.7 1.7 YgdI/YgdR family lipoprotein compare
BWI76_RS12170 +0.7 1.3 hypothetical protein compare
BWI76_RS25920 +0.7 1.6 peptidylprolyl isomerase compare
BWI76_RS10740 +0.7 1.9 NAD(P)H:quinone oxidoreductase compare
BWI76_RS02690 +0.7 1.6 hypothetical protein compare
BWI76_RS05955 +0.7 2.1 ABC transporter compare
BWI76_RS20360 +0.7 1.0 cell division protein DedD compare
BWI76_RS08310 +0.7 1.5 potassium-transporting ATPase subunit C compare
BWI76_RS09105 +0.7 4.1 glutathione ABC transporter permease GsiC compare
BWI76_RS10770 +0.7 1.3 pyrimidine utilization protein C compare
BWI76_RS17970 +0.7 1.7 zinc metalloprotease HtpX compare
BWI76_RS06595 +0.7 1.6 hypothetical protein compare
BWI76_RS01285 +0.7 2.2 amino acid ABC transporter substrate-binding protein compare
BWI76_RS06745 +0.7 1.1 N-acetyltransferase GCN5 compare
BWI76_RS21110 +0.7 4.8 hypothetical protein compare
BWI76_RS14075 +0.7 1.0 TetR family transcriptional regulator compare
BWI76_RS18055 +0.7 1.8 copper resistance protein D compare
BWI76_RS19025 +0.7 4.4 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS12485 +0.7 2.4 TyrR family transcriptional regulator compare
BWI76_RS24720 +0.7 1.5 hypothetical protein compare
BWI76_RS09090 +0.7 2.7 beta-aspartyl-peptidase compare
BWI76_RS26205 +0.7 3.1 glucose-1-phosphate adenylyltransferase compare
BWI76_RS19885 +0.7 2.4 multidrug ABC transporter permease/ATP-binding protein conserved
BWI76_RS24575 +0.7 1.2 hypothetical protein compare
BWI76_RS11675 +0.7 2.1 arginine N-succinyltransferase compare
BWI76_RS15900 +0.7 2.7 hypothetical protein compare
BWI76_RS04565 +0.7 1.7 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA compare
BWI76_RS13805 +0.7 2.3 inorganic diphosphatase compare
BWI76_RS20385 +0.7 1.5 aspartate-semialdehyde dehydrogenase compare
BWI76_RS16470 +0.7 1.1 transcriptional repressor NemR compare
BWI76_RS15340 +0.7 2.1 urea ABC transporter substrate-binding protein compare
BWI76_RS20280 +0.7 2.1 phosphodiesterase compare
BWI76_RS00100 +0.7 1.8 hypothetical protein compare
BWI76_RS27175 +0.7 1.4 hypothetical protein compare
BWI76_RS19870 +0.7 1.4 malate:quinone oxidoreductase compare
BWI76_RS24655 +0.7 2.7 autoinducer 2 ABC transporter permease LsrC compare
BWI76_RS16675 +0.6 1.1 ABC transporter compare
BWI76_RS24820 +0.6 2.2 glycerate 2-kinase compare
BWI76_RS13095 +0.6 0.8 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS09095 +0.6 3.2 glutathione ABC transporter ATP-binding protein GsiA compare
BWI76_RS26580 +0.6 3.1 universal stress protein A compare
BWI76_RS19710 +0.6 2.1 NupC/NupG family nucleoside CNT transporter compare
BWI76_RS07470 +0.6 1.6 MBL fold metallo-hydrolase compare
BWI76_RS24065 +0.6 2.8 deoxyribonuclease I compare
BWI76_RS03105 +0.6 0.9 myo-inosose-2 dehydratase compare
BWI76_RS20230 +0.6 1.1 hypothetical protein compare
BWI76_RS20220 +0.6 2.2 sugar phosphatase compare
BWI76_RS03910 +0.6 1.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS24660 +0.6 2.3 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
BWI76_RS12600 +0.6 2.9 MFS transporter compare
BWI76_RS18610 +0.6 1.6 transcriptional regulator LysR compare
BWI76_RS00715 +0.6 1.6 two-component sensor histidine kinase compare
BWI76_RS06320 +0.6 3.5 Xaa-Pro aminopeptidase compare
BWI76_RS26830 +0.6 3.0 endoglucanase compare
BWI76_RS23505 +0.6 5.2 ferrous iron transporter B compare
BWI76_RS14170 +0.6 2.3 hypothetical protein compare
BWI76_RS14980 +0.6 0.9 hypothetical protein compare
BWI76_RS19680 +0.6 2.4 catecholate siderophore receptor CirA compare
BWI76_RS07755 +0.6 3.0 isochorismatase compare
BWI76_RS16375 +0.6 2.0 electron transport complex subunit G compare
BWI76_RS24940 +0.6 1.7 hypothetical protein compare
BWI76_RS22630 +0.6 1.7 LysR family transcriptional regulator compare
BWI76_RS20395 +0.6 2.4 flagella biosynthesis regulator compare
BWI76_RS07635 +0.6 2.9 Hok/gef cell toxic protein compare
BWI76_RS14540 +0.6 1.5 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS11755 +0.6 3.2 catalase HPII compare
BWI76_RS08795 +0.6 2.9 DNA-binding response regulator compare
BWI76_RS14970 +0.6 1.2 pyrroline-5-carboxylate reductase compare
BWI76_RS10255 +0.6 1.6 dihydrodipicolinate synthase family protein compare
BWI76_RS24870 +0.6 2.1 phosphocarrier, HPr family protein compare
BWI76_RS24405 +0.6 2.5 hypothetical protein compare
BWI76_RS19470 +0.6 1.4 DNA-binding response regulator compare
BWI76_RS20810 +0.6 1.5 ethanolamine utilization cobalamin adenosyltransferase compare
BWI76_RS17280 +0.6 2.4 patatin family protein compare
BWI76_RS15190 +0.6 2.6 GGDEF domain-containing protein compare
BWI76_RS21090 +0.6 2.0 cytoskeletal protein RodZ compare
BWI76_RS05520 +0.6 2.3 hypothetical protein compare
BWI76_RS16625 +0.6 2.6 putative oxidoreductase compare
BWI76_RS01580 +0.6 1.5 hypothetical protein compare
BWI76_RS13050 +0.6 1.2 transcriptional regulator compare
BWI76_RS22685 +0.6 2.2 hypothetical protein compare
BWI76_RS20155 +0.6 1.2 NADH-quinone oxidoreductase subunit I compare
BWI76_RS08395 +0.6 1.3 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS19520 +0.6 3.1 acetyltransferase GCN5 compare
BWI76_RS13150 +0.6 1.5 carnitine operon protein CaiE compare
BWI76_RS24245 +0.6 3.1 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthase compare
BWI76_RS23330 +0.6 2.1 transcriptional regulator GalR compare
BWI76_RS18235 +0.6 1.6 trehalose-phosphatase compare
BWI76_RS09100 +0.6 2.6 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS20915 +0.6 4.4 peroxiredoxin compare
BWI76_RS09110 +0.6 1.1 glutathione ABC transporter permease GsiD compare
BWI76_RS16175 +0.6 2.6 p-aminobenzoyl-glutamate transporter compare
BWI76_RS15980 +0.6 1.2 lysine transporter LysE compare
BWI76_RS11230 +0.6 1.6 NAD-dependent deacylase compare
BWI76_RS07965 +0.6 2.3 anaerobic C4-dicarboxylate transporter DcuC compare
BWI76_RS00740 +0.6 1.6 ribonuclease E activity regulator RraA compare
BWI76_RS18675 +0.6 0.9 fimbrial protein compare
BWI76_RS24465 +0.6 2.3 adenylate cyclase compare
BWI76_RS08335 +0.6 1.4 deoxyribodipyrimidine photo-lyase compare
BWI76_RS22130 +0.6 0.8 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS05860 +0.6 2.7 alkanesulfonates-binding protein compare
BWI76_RS08080 +0.6 2.3 hypothetical protein compare
BWI76_RS16765 +0.6 2.5 spermidine/putrescine ABC transporter permease compare
BWI76_RS16950 +0.6 1.4 TetR family transcriptional regulator compare
BWI76_RS14020 +0.6 1.3 aspartate aminotransferase family protein compare
BWI76_RS10765 +0.6 2.8 pyrimidine utilization protein D compare
BWI76_RS23470 +0.6 4.5 hypothetical protein compare
BWI76_RS16690 +0.6 1.8 peptide ABC transporter permease compare
BWI76_RS15965 +0.6 2.7 MFS transporter compare
BWI76_RS14930 +0.6 1.5 hypothetical protein compare
BWI76_RS13480 +0.6 1.0 XRE family transcriptional regulator compare
BWI76_RS14300 +0.6 2.3 hypothetical protein compare
BWI76_RS16220 +0.6 1.5 hypothetical protein compare
BWI76_RS21675 +0.5 0.7 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms