Experiment set10IT074 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS09645 -5.4 -1.9 thioredoxin-disulfide reductase compare
BWI76_RS26085 -5.2 -3.2 3-dehydroquinate synthase compare
BWI76_RS27305 -5.1 -7.0 glycosyl transferase compare
BWI76_RS01210 -4.4 -4.0 tyrosine recombinase XerC compare
BWI76_RS06765 -4.2 -4.1 transcriptional regulator compare
BWI76_RS26570 -3.9 -2.7 anion permease compare
BWI76_RS24400 -3.5 -7.8 outer membrane channel protein TolC compare
BWI76_RS23480 -3.4 -11.6 EAL domain-containing protein compare
BWI76_RS05200 -3.4 -2.3 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS01325 -3.2 -1.9 twin-arginine translocase subunit TatB compare
BWI76_RS09760 -3.2 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS20435 -3.1 -1.5 chorismate synthase compare
BWI76_RS02580 -3.0 -1.8 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS04160 -2.9 -5.4 phosphoserine phosphatase compare
BWI76_RS00345 -2.8 -3.7 protein disulfide oxidoreductase DsbA compare
BWI76_RS06800 -2.8 -1.3 DUF2496 domain-containing protein compare
BWI76_RS23920 -2.7 -5.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS18950 -2.7 -5.1 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS09660 -2.6 -2.4 DNA translocase FtsK compare
BWI76_RS27290 -2.5 -7.8 hypothetical protein compare
BWI76_RS04530 -2.5 -1.7 peptidylprolyl isomerase SurA compare
BWI76_RS18920 -2.4 -2.9 ATP phosphoribosyltransferase compare
BWI76_RS09755 -2.4 -6.0 phosphoserine transaminase compare
BWI76_RS08605 -2.4 -1.4 phosphoglyceromutase compare
BWI76_RS17720 -2.3 -1.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS00025 -2.3 -1.1 hypothetical protein compare
BWI76_RS20965 -2.3 -4.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS23240 -2.3 -3.9 exonuclease V subunit gamma compare
BWI76_RS07070 -2.3 -5.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS06770 -2.3 -8.6 Hha toxicity attenuator compare
BWI76_RS02530 -2.3 -2.6 tRNA dimethylallyltransferase compare
BWI76_RS23230 -2.2 -4.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS05835 -2.2 -1.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS09970 -2.1 -5.2 porin OmpA compare
BWI76_RS23360 -2.1 -1.9 diaminopimelate decarboxylase compare
BWI76_RS25920 -2.1 -1.7 peptidylprolyl isomerase compare
BWI76_RS11635 -2.1 -1.8 ABC transporter compare
BWI76_RS11430 -2.1 -1.2 lipoprotein compare
BWI76_RS03665 -2.0 -2.6 ABC transporter ATP-binding protein compare
BWI76_RS18940 -2.0 -3.2 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS19010 -2.0 -3.6 polysaccharide pyruvyl transferase yvff compare
BWI76_RS08525 -1.9 -2.4 colicin transporter compare
BWI76_RS02410 -1.9 -2.2 EF-P beta-lysylation protein EpmB compare
BWI76_RS04645 -1.9 -3.4 3-dehydroquinase compare
BWI76_RS25220 -1.9 -2.1 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS20155 -1.9 -2.2 NADH-quinone oxidoreductase subunit I compare
BWI76_RS18925 -1.9 -5.3 histidinol dehydrogenase compare
BWI76_RS20355 -1.9 -3.3 colicin V production protein compare
BWI76_RS01615 -1.9 -7.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS26620 -1.9 -1.1 Fe-S biogenesis protein NfuA compare
BWI76_RS06475 -1.9 -1.5 protoheme IX farnesyltransferase compare
BWI76_RS15660 -1.9 -1.5 hypothetical protein compare
BWI76_RS25065 -1.8 -3.0 polyribonucleotide nucleotidyltransferase compare
BWI76_RS18935 -1.8 -4.3 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04715 -1.8 -2.2 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS05070 -1.8 -2.1 type II secretion system protein GspH compare
BWI76_RS06780 -1.8 -5.2 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS20895 -1.7 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS26460 -1.7 -3.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS07185 -1.7 -2.0 hypothetical protein compare
BWI76_RS09335 -1.7 -1.3 baseplate assembly protein W compare
BWI76_RS15215 -1.7 -1.2 N-acetyltransferase compare
BWI76_RS15760 -1.7 -1.3 hypothetical protein compare
BWI76_RS22095 -1.6 -2.3 multidrug export protein EmrA compare
BWI76_RS15680 -1.6 -1.8 hypothetical protein compare
BWI76_RS18955 -1.6 -2.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS20720 -1.6 -1.2 hypothetical protein compare
BWI76_RS02995 -1.6 -6.4 aspartate carbamoyltransferase compare
BWI76_RS26665 -1.6 -2.2 DNA-binding response regulator compare
BWI76_RS09635 -1.6 -2.2 amino acid ABC transporter ATP-binding protein compare
BWI76_RS05840 -1.6 -4.1 glutamate 5-kinase compare
BWI76_RS15835 -1.6 -1.4 hypothetical protein compare
BWI76_RS08720 -1.6 -1.8 imidazolonepropionase compare
BWI76_RS26390 -1.6 -3.6 cell division protein FtsX compare
BWI76_RS13435 -1.6 -1.7 hypothetical protein compare
BWI76_RS19495 -1.6 -1.0 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS20900 -1.5 -1.1 outer membrane protein assembly factor BamC compare
BWI76_RS23265 -1.5 -2.2 hypothetical protein compare
BWI76_RS22935 -1.5 -1.7 L-fucose mutarotase compare
BWI76_RS18240 -1.5 -2.0 L-arabinose ABC transporter permease AraH compare
BWI76_RS25505 -1.5 -6.0 RNase E specificity factor CsrD compare
BWI76_RS25225 -1.5 -4.4 ABC transporter permease compare
BWI76_RS23125 -1.5 -1.7 propanediol dehydratase small subunit compare
BWI76_RS01110 -1.5 -2.9 TDP-fucosamine acetyltransferase compare
BWI76_RS07065 -1.5 -4.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS21350 -1.4 -3.2 anti-RNA polymerase sigma factor SigE compare
BWI76_RS04255 -1.4 -4.8 threonine synthase compare
BWI76_RS18930 -1.4 -2.6 histidinol-phosphate transaminase compare
BWI76_RS26440 -1.4 -1.2 hypothetical protein compare
BWI76_RS06465 -1.4 -1.6 IclR family transcriptional regulator compare
BWI76_RS07865 -1.4 -2.2 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS04250 -1.4 -4.0 homoserine kinase compare
BWI76_RS00875 -1.4 -4.1 DNA-binding transcriptional regulator FabR compare
BWI76_RS20650 -1.4 -1.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS19375 -1.4 -1.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS23485 -1.4 -6.4 hypothetical protein compare
BWI76_RS08025 -1.4 -3.0 septal ring lytic transglycosylase RlpA compare
BWI76_RS26670 -1.3 -4.6 two-component sensor histidine kinase compare
BWI76_RS21070 -1.3 -1.5 outer membrane protein assembly factor BamB compare
BWI76_RS04515 -1.3 -1.2 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS15705 -1.3 -3.7 putative holin protein compare
BWI76_RS14390 -1.3 -1.9 hypothetical protein compare
BWI76_RS08530 -1.3 -2.4 protein TolA compare
BWI76_RS16975 -1.3 -3.1 cysteine desufuration protein SufE compare
BWI76_RS01115 -1.3 -2.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS27915 -1.3 -1.4 YceK/YidQ family lipoprotein compare
BWI76_RS21475 -1.3 -2.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS00760 -1.3 -3.9 cell division protein FtsN compare
BWI76_RS25960 -1.3 -1.5 NUDIX hydrolase compare
BWI76_RS19685 -1.2 -4.9 lysine transporter compare
BWI76_RS20350 -1.2 -5.4 amidophosphoribosyltransferase compare
BWI76_RS01090 -1.2 -3.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS20360 -1.2 -1.0 cell division protein DedD compare
BWI76_RS21265 -1.2 -7.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS11190 -1.2 -2.0 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS21450 -1.2 -1.6 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS00835 -1.2 -7.5 phosphoenolpyruvate carboxylase compare
BWI76_RS23220 -1.2 -3.7 amino-acid N-acetyltransferase compare
BWI76_RS15670 -1.2 -3.1 hypothetical protein compare
BWI76_RS11155 -1.2 -1.9 penicillin-binding protein activator LpoB compare
BWI76_RS15810 -1.2 -3.5 hypothetical protein compare
BWI76_RS18770 -1.2 -1.1 DNA gyrase inhibitor compare
BWI76_RS09640 -1.2 -2.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS18715 -1.2 -5.5 hypothetical protein compare
BWI76_RS01185 -1.2 -1.5 adenylate cyclase compare
BWI76_RS16920 -1.2 -1.4 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS24920 -1.2 -1.8 YraN family protein compare
BWI76_RS21480 -1.2 -4.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS26150 -1.2 -2.6 molecular chaperone Hsp33 compare
BWI76_RS15115 -1.2 -4.4 MFS transporter compare
BWI76_RS21000 -1.2 -2.4 exopolyphosphatase compare
BWI76_RS20125 -1.2 -5.3 integrase compare
BWI76_RS00975 -1.2 -6.3 dihydroxy-acid dehydratase compare
BWI76_RS26395 -1.2 -1.4 cell division protein FtsE compare
BWI76_RS20725 -1.1 -2.5 GNAT family acetyltransferase compare
BWI76_RS19585 -1.1 -1.7 gentisate 1,2-dioxygenase compare
BWI76_RS27825 -1.1 -1.8 hypothetical protein compare
BWI76_RS00970 -1.1 -2.6 branched chain amino acid aminotransferase compare
BWI76_RS15685 -1.1 -1.8 hypothetical protein compare
BWI76_RS08535 -1.1 -1.6 translocation protein TolB compare
BWI76_RS24600 -1.1 -2.7 dihydroxyacetone kinase compare
BWI76_RS11820 -1.1 -1.0 short-chain dehydrogenase/reductase SDR compare
BWI76_RS27310 -1.1 -3.7 glycosyltransferase compare
BWI76_RS08380 -1.1 -1.1 endonuclease VIII compare
BWI76_RS27605 -1.1 -1.9 hypothetical protein compare
BWI76_RS02810 -1.1 -1.9 sugar ABC transporter permease YjfF compare
BWI76_RS16715 -1.1 -5.6 hypothetical protein compare
BWI76_RS23475 -1.1 -5.7 helix-turn-helix transcriptional regulator compare
BWI76_RS01095 -1.1 -1.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS22960 -1.1 -2.1 YgdI/YgdR family lipoprotein compare
BWI76_RS05355 -1.1 -2.5 methionine ABC transporter substrate-binding protein MetQ compare
BWI76_RS17860 -1.1 -1.5 YoaH family protein compare
BWI76_RS15350 -1.1 -1.0 hypothetical protein compare
BWI76_RS12070 -1.1 -1.0 hypothetical protein compare
BWI76_RS01330 -1.1 -2.6 twin-arginine translocase subunit TatC compare
BWI76_RS22485 -1.1 -3.1 hypothetical protein compare
BWI76_RS18710 -1.0 -5.9 GGDEF-domain containing protein compare
BWI76_RS04470 -1.0 -4.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS25230 -1.0 -2.5 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS08495 -1.0 -3.7 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS01610 -1.0 -2.6 phosphoribosylamine--glycine ligase compare
BWI76_RS06325 -1.0 -2.2 hypothetical protein compare
BWI76_RS02855 -1.0 -1.8 cytochrome B562 compare
BWI76_RS01885 -1.0 -1.0 CsbD family protein compare
BWI76_RS07595 -1.0 -1.9 putative oxidoreductase compare
BWI76_RS13645 -1.0 -1.8 N-hydroxyarylamine O-acetyltransferase compare
BWI76_RS15110 -1.0 -6.1 putative excinuclease ABC subunit A compare
BWI76_RS10745 -1.0 -0.9 hypothetical protein compare
BWI76_RS05350 -1.0 -4.0 Rcs stress response system protein RcsF compare
BWI76_RS06495 -1.0 -4.6 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS23365 -1.0 -2.2 LysR family transcriptional regulator compare
BWI76_RS06205 -1.0 -1.8 recombination-associated protein RdgC compare
BWI76_RS15830 -1.0 -2.5 hypothetical protein compare
BWI76_RS25480 -1.0 -2.3 ribonuclease E/G compare
BWI76_RS13775 -1.0 -1.9 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS17290 -1.0 -2.5 formyltetrahydrofolate deformylase compare
BWI76_RS05450 -1.0 -1.2 ribonuclease HI compare
BWI76_RS20475 -1.0 -1.9 phospholipid-binding lipoprotein MlaA compare
BWI76_RS18195 -1.0 -2.8 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
BWI76_RS19805 -1.0 -2.3 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS25910 -1.0 -3.1 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS27440 -1.0 -2.2 DNA helicase RecG compare
BWI76_RS09240 -1.0 -2.7 phosphoadenosine phosphosulfate reductase compare
BWI76_RS06490 -1.0 -2.5 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS20050 -1.0 -1.0 hypothetical protein compare
BWI76_RS20565 -1.0 -1.2 hypothetical protein compare
BWI76_RS11610 -1.0 -1.4 glutamate dehydrogenase compare
BWI76_RS17250 -1.0 -4.0 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BWI76_RS18140 -1.0 -2.2 zinc ABC transporter permease compare
BWI76_RS23455 -0.9 -1.4 Na(+)-translocating NADH-quinone reductase subunit E compare
BWI76_RS06775 -0.9 -5.0 multidrug efflux RND transporter permease subunit compare
BWI76_RS07855 -0.9 -1.6 PucR family transcriptional regulator compare
BWI76_RS06295 -0.9 -2.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS13560 -0.9 -0.8 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS07970 -0.9 -2.4 hypothetical protein compare
BWI76_RS05555 -0.9 -1.5 Crl family RNA polymerase assembly factor compare
BWI76_RS09710 -0.9 -1.9 transketolase compare
BWI76_RS27015 -0.9 -2.1 hypothetical protein compare
BWI76_RS15640 -0.9 -2.9 hypothetical protein compare
BWI76_RS19845 -0.9 -2.2 phosphatase compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms