Experiment set10IT074 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS07465 +7.7 28.2 TetR family transcriptional regulator compare
BWI76_RS22120 +7.1 51.7 glutamate--cysteine ligase compare
BWI76_RS00140 +6.9 11.7 phosphate transport system regulator PhoU compare
BWI76_RS24075 +6.5 26.1 glutathione synthase compare
BWI76_RS27675 +6.2 33.2 EmrB/QacA family drug resistance transporter compare
BWI76_RS26685 +6.0 29.2 glutathione-disulfide reductase compare
BWI76_RS01070 +5.6 30.6 thiol reductase thioredoxin compare
BWI76_RS20995 +5.1 26.5 RNA degradosome polyphosphate kinase compare
BWI76_RS20640 +4.8 15.0 cysteine synthase A compare
BWI76_RS26095 +3.0 3.7 shikimate kinase compare
BWI76_RS22090 +2.4 4.5 transcriptional regulator compare
BWI76_RS06785 +2.4 10.3 DNA-binding transcriptional repressor AcrR compare
BWI76_RS10305 +2.2 6.1 transposase compare
BWI76_RS09625 +2.1 3.9 hypothetical protein compare
BWI76_RS12170 +2.0 2.6 hypothetical protein compare
BWI76_RS04850 +1.8 8.3 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS21235 +1.7 2.1 hypothetical protein compare
BWI76_RS00865 +1.7 5.6 DNA-binding transcriptional regulator OxyR compare
BWI76_RS20695 +1.7 2.6 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS22085 +1.6 6.6 L-valine transporter subunit YgaH compare
BWI76_RS14075 +1.6 2.7 TetR family transcriptional regulator compare
BWI76_RS05440 +1.6 9.5 hydroxyacylglutathione hydrolase compare
BWI76_RS22815 +1.6 11.0 hybrid sensor histidine kinase/response regulator compare
BWI76_RS06635 +1.5 1.1 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS15095 +1.5 4.9 isochorismatase compare
BWI76_RS05235 +1.5 2.0 hypothetical protein compare
BWI76_RS17975 +1.4 5.2 tail-specific protease compare
BWI76_RS11205 +1.4 3.1 transcription-repair coupling factor compare
BWI76_RS00180 +1.4 2.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS14620 +1.4 3.7 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase compare
BWI76_RS08405 +1.4 3.6 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS17045 +1.4 2.2 hypothetical protein compare
BWI76_RS25285 +1.4 1.4 HPr family phosphocarrier protein compare
BWI76_RS26470 +1.3 6.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS16275 +1.3 2.5 fumarate hydratase FumA compare
BWI76_RS17910 +1.3 4.2 hypothetical protein compare
BWI76_RS06340 +1.3 1.3 hypothetical protein compare
BWI76_RS17955 +1.2 3.9 hypothetical protein compare
BWI76_RS16360 +1.2 1.8 electron transport complex subunit RsxB compare
BWI76_RS17915 +1.2 5.6 membrane protein compare
BWI76_RS02815 +1.2 1.5 fructose-bisphosphatase class I compare
BWI76_RS25245 +1.2 2.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS15975 +1.2 1.5 hypothetical protein compare
BWI76_RS18335 +1.2 7.4 DNA-binding response regulator compare
BWI76_RS20880 +1.2 1.3 esterase compare
BWI76_RS11435 +1.2 1.9 hypothetical protein compare
BWI76_RS17645 +1.2 3.3 hypothetical protein compare
BWI76_RS01890 +1.2 2.9 transcriptional regulator Zur compare
BWI76_RS09195 +1.1 1.2 N-acetyltransferase compare
BWI76_RS16805 +1.1 1.9 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS21105 +1.1 4.8 penicillin-binding protein 1C compare
BWI76_RS15190 +1.1 4.1 GGDEF domain-containing protein compare
BWI76_RS13300 +1.1 1.1 carboxylesterase compare
BWI76_RS24335 +1.1 2.5 two-component system response regulator QseB compare
BWI76_RS17390 +1.1 1.9 DsrE family protein compare
BWI76_RS08745 +1.1 2.5 proline-specific permease compare
BWI76_RS19985 +1.1 2.5 MFS transporter compare
BWI76_RS17370 +1.1 2.2 nitrate transporter NasD compare
BWI76_RS13480 +1.1 1.8 XRE family transcriptional regulator compare
BWI76_RS21110 +1.0 6.0 hypothetical protein compare
BWI76_RS01585 +1.0 4.4 transcriptional regulator compare
BWI76_RS02180 +1.0 0.9 hypothetical protein compare
BWI76_RS26185 +1.0 2.1 thiosulfate sulfurtransferase compare
BWI76_RS19330 +1.0 0.9 HAD family hydrolase compare
BWI76_RS11755 +1.0 1.8 catalase HPII compare
BWI76_RS16515 +1.0 2.1 LysR family transcriptional regulator compare
BWI76_RS09520 +1.0 1.5 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS24810 +1.0 1.5 hypothetical protein compare
BWI76_RS04705 +1.0 4.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS18780 +1.0 1.3 D-alanyl-D-alanine carboxypeptidase compare
BWI76_RS17770 +1.0 2.3 isomerase/hydrolase compare
BWI76_RS17980 +1.0 4.2 RNA chaperone ProQ compare
BWI76_RS08645 +1.0 2.0 molybdate ABC transporter substrate-binding protein compare
BWI76_RS20380 +1.0 1.1 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS19240 +1.0 1.6 ABC transporter substrate-binding protein compare
BWI76_RS05015 +1.0 2.9 transcriptional regulator compare
BWI76_RS23340 +0.9 1.3 transcriptional regulator compare
BWI76_RS02745 +0.9 1.3 hypothetical protein compare
BWI76_RS08260 +0.9 3.0 LysR family transcriptional regulator compare
BWI76_RS07590 +0.9 3.0 glutamate ABC transporter ATP-binding protein compare
BWI76_RS20785 +0.9 1.0 ethanolamine utilization protein EutJ compare
BWI76_RS15280 +0.9 3.0 sugar transporter compare
BWI76_RS11285 +0.9 1.2 transcriptional regulator compare
BWI76_RS02690 +0.9 1.9 hypothetical protein compare
BWI76_RS23490 +0.9 5.2 fimbrial protein compare
BWI76_RS16295 +0.9 2.2 bifunctional PTS system maltose and glucose-specific transporter subunits IICB compare
BWI76_RS06250 +0.9 1.1 alpha-glycosidase compare
BWI76_RS02655 +0.9 1.7 hypothetical protein compare
BWI76_RS24465 +0.9 2.0 adenylate cyclase compare
BWI76_RS16510 +0.9 2.3 transcriptional repressor PurR compare
BWI76_RS14680 +0.9 2.4 SefF compare
BWI76_RS10285 +0.9 3.3 family 3 extracellular solute-binding protein compare
BWI76_RS09820 +0.9 2.8 hypothetical protein compare
BWI76_RS12580 +0.9 2.1 oxidoreductase compare
BWI76_RS12570 +0.9 2.0 DUF1365 domain-containing protein compare
BWI76_RS15205 +0.8 2.6 succinate-semialdehyde dehydrogenase compare
BWI76_RS08395 +0.8 1.7 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS13545 +0.8 1.1 N-acetyltransferase compare
BWI76_RS09805 +0.8 3.0 hypothetical protein compare
BWI76_RS22130 +0.8 1.9 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS16655 +0.8 2.3 CatA-like O-acetyltransferase compare
BWI76_RS16325 +0.8 2.0 adenosine deaminase compare
BWI76_RS19865 +0.8 1.6 ecotin compare
BWI76_RS16525 +0.8 1.6 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS12485 +0.8 1.6 TyrR family transcriptional regulator compare
BWI76_RS17675 +0.8 1.8 hypothetical protein compare
BWI76_RS15720 +0.8 3.2 prophage protein NinE compare
BWI76_RS17740 +0.8 3.7 SpoVR family protein compare
BWI76_RS21485 +0.8 3.8 DUF4154 domain-containing protein compare
BWI76_RS21445 +0.8 1.5 hypothetical protein compare
BWI76_RS16815 +0.8 1.2 periplasmic binding protein compare
BWI76_RS24925 +0.8 1.3 DnaA initiator-associating protein DiaA compare
BWI76_RS20385 +0.8 2.3 aspartate-semialdehyde dehydrogenase compare
BWI76_RS09360 +0.8 2.0 hypothetical protein compare
BWI76_RS21570 +0.8 2.1 RnfH family protein compare
BWI76_RS11585 +0.8 2.7 signal peptide peptidase A compare
BWI76_RS11440 +0.8 1.0 hypothetical protein compare
BWI76_RS05465 +0.8 0.7 amidohydrolase compare
BWI76_RS08275 +0.8 1.0 LexA regulated protein compare
BWI76_RS11260 +0.8 1.5 hypothetical protein compare
BWI76_RS27425 +0.8 1.9 DNA-directed RNA polymerase subunit omega compare
BWI76_RS01335 +0.8 2.1 DNase TatD compare
BWI76_RS22215 +0.8 4.0 PTS sorbitol transporter subunit IIC compare
BWI76_RS23495 +0.8 4.9 hypothetical protein compare
BWI76_RS00560 +0.8 2.1 hypothetical protein compare
BWI76_RS09100 +0.8 3.1 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS09960 +0.8 1.6 Lon protease compare
BWI76_RS26520 +0.8 2.2 nickel import ATP-binding protein NikE compare
BWI76_RS09830 +0.8 1.4 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
BWI76_RS11875 +0.8 2.4 hypothetical protein compare
BWI76_RS19505 +0.8 3.7 ABC transporter substrate-binding protein compare
BWI76_RS23500 +0.8 6.6 hypothetical protein compare
BWI76_RS15940 +0.8 1.5 DMSO reductase maturation protein DsmD compare
BWI76_RS23470 +0.8 5.8 hypothetical protein compare
BWI76_RS18745 +0.8 0.9 adenosylhomocysteinase compare
BWI76_RS09030 +0.8 3.2 transpeptidase compare
BWI76_RS00450 +0.8 2.0 formate dehydrogenase accessory protein FdhE compare
BWI76_RS06375 +0.8 2.1 oxidoreductase compare
BWI76_RS19320 +0.8 1.5 putative ABC transport system periplasmic binding protein compare
BWI76_RS22185 +0.7 2.2 hypothetical protein compare
BWI76_RS12160 +0.7 2.2 hypothetical protein compare
BWI76_RS24485 +0.7 1.3 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS11395 +0.7 1.4 RNA polymerase sigma factor FecI compare
BWI76_RS26890 +0.7 0.8 hypothetical protein compare
BWI76_RS18235 +0.7 1.3 trehalose-phosphatase compare
BWI76_RS14770 +0.7 1.2 PTS IIA 2 domain protein compare
BWI76_RS23020 +0.7 1.0 cobalamin biosynthesis protein CbiQ compare
BWI76_RS24260 +0.7 1.3 hypothetical protein compare
BWI76_RS09825 +0.7 3.1 envelope biogenesis factor ElyC compare
BWI76_RS27430 +0.7 0.7 (p)ppGpp synthetase compare
BWI76_RS22420 +0.7 1.4 LacI family transcriptional regulator compare
BWI76_RS13180 +0.7 2.4 multidrug transporter EmrA compare
BWI76_RS24245 +0.7 2.3 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthase compare
BWI76_RS12825 +0.7 1.7 hypothetical protein compare
BWI76_RS06070 +0.7 1.5 taurine transporter ATP-binding subunit compare
BWI76_RS22315 +0.7 3.0 formate hydrogenlyase complex iron-sulfur subunit compare
BWI76_RS27865 +0.7 1.7 hypothetical protein compare
BWI76_RS12470 +0.7 1.2 thiosulfate sulfurtransferase PspE compare
BWI76_RS14030 +0.7 1.4 ABC transporter permease compare
BWI76_RS07540 +0.7 3.7 dipeptide ABC transporter ATP-binding protein DppD compare
BWI76_RS23505 +0.7 5.6 ferrous iron transporter B compare
BWI76_RS07775 +0.7 2.1 carbon starvation protein A compare
BWI76_RS21310 +0.7 0.9 DNA repair protein RecO compare
BWI76_RS14765 +0.7 1.9 PTS lactose/cellobiose transporter subunit IIB compare
BWI76_RS12855 +0.7 1.3 enamine deaminase RidA compare
BWI76_RS25425 +0.7 1.3 arginine repressor compare
BWI76_RS11900 +0.7 0.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS14925 +0.7 1.4 ABC transporter substrate-binding protein compare
BWI76_RS14670 +0.7 1.4 hypothetical protein compare
BWI76_RS12600 +0.7 1.5 MFS transporter compare
BWI76_RS25965 +0.7 2.9 hydrolase compare
BWI76_RS21075 +0.7 0.5 membrane protein compare
BWI76_RS11020 +0.7 1.6 oxidoreductase family, NAD-binding protein compare
BWI76_RS19025 +0.7 5.0 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS13805 +0.7 1.0 inorganic diphosphatase compare
BWI76_RS04170 +0.7 4.0 trifunctional nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR compare
BWI76_RS00940 +0.7 2.8 transcriptional regulator HdfR compare
BWI76_RS03610 +0.7 1.9 hypothetical protein compare
BWI76_RS07060 +0.7 3.5 carbamate kinase compare
BWI76_RS10765 +0.7 2.7 pyrimidine utilization protein D compare
BWI76_RS17470 +0.7 1.0 MerR family transcriptional regulator compare
BWI76_RS03310 +0.7 2.3 AraC family transcriptional regulator compare
BWI76_RS11250 +0.7 1.1 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS21365 +0.7 1.6 tRNA (adenosine(37)-N6)-methyltransferase TrmM compare
BWI76_RS13195 +0.7 1.1 glutamate dehydrogenase compare
BWI76_RS06015 +0.7 0.7 hypothetical protein compare
BWI76_RS13130 +0.7 1.5 phenylacetic acid degradation protein PaaD compare
BWI76_RS06810 +0.7 2.0 hypothetical protein compare
BWI76_RS08885 +0.7 1.3 transcriptional regulator compare
BWI76_RS03525 +0.7 2.3 tryptophanyl-tRNA synthetase compare
BWI76_RS17890 +0.7 1.8 PTS mannose transporter subunit EIIAB compare
BWI76_RS06520 +0.7 2.0 trigger factor compare
BWI76_RS22930 +0.7 0.9 L-fuculokinase (EC 2.7.1.51) (from data) compare
BWI76_RS22845 +0.7 2.4 flavodoxin compare
BWI76_RS13160 +0.7 1.2 azoreductase compare
BWI76_RS11835 +0.7 1.3 putative regulatory protein MarR compare
BWI76_RS15030 +0.7 2.0 ABC transporter compare
BWI76_RS03800 +0.7 1.4 hypothetical protein compare
BWI76_RS05190 +0.7 2.4 hypothetical protein compare
BWI76_RS24255 +0.7 2.1 thiol:disulfide oxidoreductase compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms