Experiment set10IT073 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS01210 -7.4 -4.8 tyrosine recombinase XerC compare
BWI76_RS26085 -4.2 -2.8 3-dehydroquinate synthase compare
BWI76_RS04715 -3.9 -2.1 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS12420 -3.8 -1.4 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS06765 -3.3 -3.5 transcriptional regulator compare
BWI76_RS09660 -3.2 -3.1 DNA translocase FtsK compare
BWI76_RS23240 -3.2 -3.1 exonuclease V subunit gamma compare
BWI76_RS04305 -2.9 -1.1 molecular chaperone DnaJ compare
BWI76_RS21070 -2.9 -2.5 outer membrane protein assembly factor BamB compare
BWI76_RS23230 -2.7 -2.6 exodeoxyribonuclease V subunit beta compare
BWI76_RS27305 -2.7 -6.9 glycosyl transferase compare
BWI76_RS06740 -2.7 -3.3 50S ribosomal protein L36 compare
BWI76_RS24400 -2.6 -5.2 outer membrane channel protein TolC compare
BWI76_RS23480 -2.5 -8.3 EAL domain-containing protein compare
BWI76_RS15835 -2.5 -2.0 hypothetical protein compare
BWI76_RS06770 -2.5 -9.9 Hha toxicity attenuator compare
BWI76_RS15680 -2.5 -2.8 hypothetical protein compare
BWI76_RS01325 -2.5 -2.2 twin-arginine translocase subunit TatB compare
BWI76_RS21580 -2.4 -2.2 SsrA-binding protein compare
BWI76_RS15825 -2.4 -2.8 hypothetical protein compare
BWI76_RS18385 -2.4 -1.3 hypothetical protein compare
BWI76_RS08525 -2.4 -3.4 colicin transporter compare
BWI76_RS12285 -2.4 -2.7 hypothetical protein compare
BWI76_RS06780 -2.4 -5.9 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS17720 -2.3 -1.2 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS09960 -2.3 -2.5 Lon protease compare
BWI76_RS00345 -2.3 -2.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS26665 -2.3 -2.6 DNA-binding response regulator compare
BWI76_RS21165 -2.2 -1.4 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS18240 -2.2 -1.3 L-arabinose ABC transporter permease AraH compare
BWI76_RS09970 -2.2 -5.1 porin OmpA compare
BWI76_RS23760 -2.2 -1.4 tRNA-Gly compare
BWI76_RS16210 -2.1 -1.3 hypothetical protein compare
BWI76_RS26390 -2.1 -4.4 cell division protein FtsX compare
BWI76_RS24945 -2.1 -1.1 glutamine amidotransferase compare
BWI76_RS06800 -2.1 -1.1 DUF2496 domain-containing protein compare
BWI76_RS26570 -2.1 -2.4 anion permease compare
BWI76_RS05260 -2.1 -1.3 chaperone compare
BWI76_RS24270 -2.0 -2.9 membrane protein compare
BWI76_RS05840 -2.0 -4.7 glutamate 5-kinase compare
BWI76_RS09635 -2.0 -1.7 amino acid ABC transporter ATP-binding protein compare
BWI76_RS18940 -2.0 -4.2 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS18770 -2.0 -1.3 DNA gyrase inhibitor compare
BWI76_RS09755 -1.9 -6.1 phosphoserine transaminase compare
BWI76_RS23920 -1.9 -3.4 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS20720 -1.9 -1.3 hypothetical protein compare
BWI76_RS12070 -1.9 -1.2 hypothetical protein compare
BWI76_RS07865 -1.9 -2.4 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS20435 -1.9 -1.4 chorismate synthase compare
BWI76_RS02410 -1.8 -1.3 EF-P beta-lysylation protein EpmB compare
BWI76_RS26670 -1.8 -6.5 two-component sensor histidine kinase compare
BWI76_RS08495 -1.8 -3.7 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS04160 -1.8 -4.9 phosphoserine phosphatase compare
BWI76_RS09760 -1.7 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS19405 -1.7 -3.2 LysR family transcriptional regulator compare
BWI76_RS06475 -1.7 -1.2 protoheme IX farnesyltransferase compare
BWI76_RS00080 -1.7 -2.7 N-acetylmannosamine kinase compare
BWI76_RS13560 -1.7 -1.1 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS18925 -1.7 -4.4 histidinol dehydrogenase compare
BWI76_RS16075 -1.7 -1.4 oxidoreductase compare
BWI76_RS07640 -1.6 -1.4 short chain dehydrogenase compare
BWI76_RS16935 -1.6 -1.0 shikimate dehydrogenase compare
BWI76_RS20355 -1.6 -3.8 colicin V production protein compare
BWI76_RS18935 -1.6 -5.2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS06830 -1.6 -4.6 recombination protein RecR compare
BWI76_RS21505 -1.6 -1.0 hypothetical protein compare
BWI76_RS04645 -1.6 -3.4 3-dehydroquinase compare
BWI76_RS27290 -1.6 -6.6 hypothetical protein compare
BWI76_RS08655 -1.6 -2.7 molybdenum ABC transporter ATP-binding protein compare
BWI76_RS26395 -1.6 -3.9 cell division protein FtsE compare
BWI76_RS14410 -1.5 -3.0 hypothetical protein compare
BWI76_RS00720 -1.5 -2.0 DNA-binding response regulator compare
BWI76_RS06775 -1.5 -6.8 multidrug efflux RND transporter permease subunit compare
BWI76_RS18930 -1.5 -3.3 histidinol-phosphate transaminase compare
BWI76_RS23320 -1.5 -1.2 hypothetical protein compare
BWI76_RS15115 -1.5 -5.2 MFS transporter compare
BWI76_RS11250 -1.5 -1.2 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS01630 -1.5 -0.9 16S ribosomal RNA compare
BWI76_RS08640 -1.5 -1.4 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS09860 -1.4 -3.0 hypothetical protein compare
BWI76_RS08650 -1.4 -1.8 molybdate ABC transporter permease compare
BWI76_RS04510 -1.4 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS12195 -1.4 -2.8 hypothetical protein compare
BWI76_RS25960 -1.4 -2.1 NUDIX hydrolase compare
BWI76_RS18950 -1.4 -2.5 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS27175 -1.4 -1.8 hypothetical protein compare
BWI76_RS06680 -1.4 -0.9 hypothetical protein compare
BWI76_RS16455 -1.4 -1.5 superoxide dismutase compare
BWI76_RS00425 -1.4 -1.5 D-tyrosyl-tRNA(Tyr) deacylase compare
BWI76_RS10815 -1.3 -2.0 iron permease compare
BWI76_RS25160 -1.3 -1.3 transcription elongation factor GreA compare
BWI76_RS12225 -1.3 -1.6 hypothetical protein compare
BWI76_RS24585 -1.3 -2.2 glycerol dehydrogenase compare
BWI76_RS01090 -1.3 -2.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS10920 -1.3 -2.5 putative TetR family transcriptional regulator compare
BWI76_RS18455 -1.3 -1.1 tRNA-Ser compare
BWI76_RS10745 -1.3 -0.9 hypothetical protein compare
BWI76_RS06490 -1.3 -2.9 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS12235 -1.3 -1.6 hypothetical protein compare
BWI76_RS21980 -1.3 -2.5 hypothetical protein compare
BWI76_RS04465 -1.3 -2.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS05200 -1.3 -1.6 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS19035 -1.2 -4.5 dTDP-rhamnosyl transferase compare
BWI76_RS12950 -1.2 -2.8 acriflavin resistance protein AcrA compare
BWI76_RS01115 -1.2 -2.1 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS21685 -1.2 -1.1 hypothetical protein compare
BWI76_RS15110 -1.2 -7.1 putative excinuclease ABC subunit A compare
BWI76_RS23365 -1.2 -2.5 LysR family transcriptional regulator compare
BWI76_RS22205 -1.2 -1.8 cation ABC transporter ATP-binding protein compare
BWI76_RS08530 -1.2 -1.9 protein TolA compare
BWI76_RS24715 -1.2 -2.5 serine/threonine transporter SstT compare
BWI76_RS19870 -1.2 -1.8 malate:quinone oxidoreductase compare
BWI76_RS27015 -1.2 -3.7 hypothetical protein compare
BWI76_RS17190 -1.2 -1.8 TonB system transport protein TonB compare
BWI76_RS15810 -1.2 -3.5 hypothetical protein compare
BWI76_RS00590 -1.2 -1.9 hypothetical protein compare
BWI76_RS03045 -1.2 -0.9 hypothetical protein compare
BWI76_RS12155 -1.2 -2.4 hypothetical protein compare
BWI76_RS13400 -1.2 -2.8 GntR family transcriptional regulator compare
BWI76_RS21475 -1.2 -3.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS26620 -1.2 -0.7 Fe-S biogenesis protein NfuA compare
BWI76_RS17955 -1.2 -2.2 hypothetical protein compare
BWI76_RS07065 -1.2 -3.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS18125 -1.1 -2.6 murein DD-endopeptidase MepM compare
BWI76_RS05970 -1.1 -1.9 hypothetical protein compare
BWI76_RS09640 -1.1 -2.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS18780 -1.1 -1.3 D-alanyl-D-alanine carboxypeptidase compare
BWI76_RS06730 -1.1 -1.9 lac repressor compare
BWI76_RS11015 -1.1 -2.1 hypothetical protein compare
BWI76_RS27460 -1.1 -2.7 hypothetical protein compare
BWI76_RS05835 -1.1 -1.7 gamma-glutamyl-phosphate reductase compare
BWI76_RS21000 -1.1 -2.4 exopolyphosphatase compare
BWI76_RS27310 -1.1 -4.6 glycosyltransferase compare
BWI76_RS05135 -1.1 -1.6 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS10575 -1.1 -1.1 polar amino acid ABC transporter permease compare
BWI76_RS09515 -1.1 -1.8 arginine ABC transporter substrate-binding protein compare
BWI76_RS25230 -1.1 -3.1 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS04250 -1.1 -4.3 homoserine kinase compare
BWI76_RS20360 -1.1 -0.8 cell division protein DedD compare
BWI76_RS25215 -1.1 -1.9 phospholipid-binding protein MlaC compare
BWI76_RS16975 -1.1 -2.4 cysteine desufuration protein SufE compare
BWI76_RS07380 -1.1 -1.4 hypothetical protein compare
BWI76_RS16995 -1.1 -4.9 Fe-S cluster assembly protein SufB compare
BWI76_RS17155 -1.1 -1.1 hypothetical protein compare
BWI76_RS12305 -1.1 -3.3 hypothetical protein compare
BWI76_RS20930 -1.1 -1.1 arsenate reductase (glutaredoxin) compare
BWI76_RS12300 -1.1 -4.8 hypothetical protein compare
BWI76_RS15660 -1.1 -0.9 hypothetical protein compare
BWI76_RS23220 -1.1 -4.5 amino-acid N-acetyltransferase compare
BWI76_RS23485 -1.0 -3.4 hypothetical protein compare
BWI76_RS24955 -1.0 -1.2 hypothetical protein compare
BWI76_RS10945 -1.0 -1.6 SecY/SecA suppressor protein compare
BWI76_RS15200 -1.0 -2.4 glutaminase compare
BWI76_RS10755 -1.0 -0.8 pyrimidine utilization flavin reductase protein F compare
BWI76_RS11520 -1.0 -0.8 hypothetical protein compare
BWI76_RS06240 -1.0 -2.6 branched-chain amino acid transport system 2 carrier protein BrnQ compare
BWI76_RS10365 -1.0 -1.9 class IV aminotransferase compare
BWI76_RS10835 -1.0 -1.0 hypothetical protein compare
BWI76_RS23745 -1.0 -1.6 arsenate reductase compare
BWI76_RS07185 -1.0 -1.3 hypothetical protein compare
BWI76_RS24040 -1.0 -2.0 hypothetical protein compare
BWI76_RS23820 -1.0 -1.7 flavodoxin FldB compare
BWI76_RS15850 -1.0 -1.7 DUF1317 domain-containing protein compare
BWI76_RS24600 -1.0 -2.9 dihydroxyacetone kinase compare
BWI76_RS18140 -1.0 -1.2 zinc ABC transporter permease compare
BWI76_RS00850 -1.0 -4.3 acetylglutamate kinase compare
BWI76_RS25220 -1.0 -1.2 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS02995 -1.0 -4.0 aspartate carbamoyltransferase compare
BWI76_RS25980 -0.9 -1.8 hypothetical protein compare
BWI76_RS09305 -0.9 -1.0 hypothetical protein compare
BWI76_RS18710 -0.9 -5.3 GGDEF-domain containing protein compare
BWI76_RS20350 -0.9 -2.6 amidophosphoribosyltransferase compare
BWI76_RS03295 -0.9 -1.1 transposase compare
BWI76_RS25485 -0.9 -0.8 septum formation protein Maf compare
BWI76_RS07920 -0.9 -2.2 methionine aminotransferase compare
BWI76_RS26200 -0.9 -3.9 starch synthase compare
BWI76_RS23830 -0.9 -2.3 hypothetical protein compare
BWI76_RS09505 -0.9 -1.7 arginine transporter permease subunit ArtM compare
BWI76_RS18135 -0.9 -2.8 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS15530 -0.9 -1.9 hypothetical protein compare
BWI76_RS15235 -0.9 -1.7 hypothetical protein compare
BWI76_RS18565 -0.9 -1.4 pemk protein compare
BWI76_RS05335 -0.9 -1.6 copper homeostasis/adhesion lipoprotein NlpE compare
BWI76_RS27225 -0.9 -1.8 rhodanese-like domain-containing protein compare
BWI76_RS05010 -0.9 -1.7 tRNA glutamyl-Q synthetase compare
BWI76_RS25505 -0.9 -2.9 RNase E specificity factor CsrD compare
BWI76_RS18165 -0.9 -0.8 NUDIX pyrophosphatase compare
BWI76_RS10820 -0.9 -2.1 iron uptake system protein EfeO compare
BWI76_RS18715 -0.9 -3.3 hypothetical protein compare
BWI76_RS26775 -0.9 -2.3 endo-1,4-D-glucanase compare
BWI76_RS00355 -0.9 -1.7 DNA polymerase I compare
BWI76_RS25080 -0.9 -2.2 tRNA pseudouridine(55) synthase compare
BWI76_RS11335 -0.9 -0.7 tautomerase compare
BWI76_RS22950 -0.9 -1.2 membrane protein compare
BWI76_RS00375 -0.9 -1.8 hypothetical protein compare
BWI76_RS23825 -0.9 -2.9 hypothetical protein compare
BWI76_RS01870 -0.9 -2.7 diacylglycerol kinase compare
BWI76_RS05130 -0.9 -3.0 iron-hydroxamate transporter ATP-binding subunit conserved
BWI76_RS05425 -0.9 -2.2 EEP domain-containing protein compare
BWI76_RS23360 -0.9 -1.6 diaminopimelate decarboxylase compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms