Experiment set10IT070 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS20355 -8.1 -5.6 colicin V production protein compare
BWI76_RS20965 -7.9 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS11965 -7.5 -5.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS20350 -6.6 -7.4 amidophosphoribosyltransferase compare
BWI76_RS02995 -6.5 -7.7 aspartate carbamoyltransferase compare
BWI76_RS01615 -6.3 -7.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS18940 -6.0 -5.8 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS26085 -5.8 -4.0 3-dehydroquinate synthase compare
BWI76_RS20895 -5.7 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS09760 -5.5 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS21265 -5.4 -14.8 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04470 -5.4 -9.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS27385 -5.3 -7.2 orotate phosphoribosyltransferase compare
BWI76_RS21475 -5.2 -8.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS00835 -5.1 -15.6 phosphoenolpyruvate carboxylase compare
BWI76_RS04255 -5.1 -11.7 threonine synthase compare
BWI76_RS23240 -5.0 -3.4 exonuclease V subunit gamma compare
BWI76_RS09755 -5.0 -8.2 phosphoserine transaminase compare
BWI76_RS23365 -4.9 -6.2 LysR family transcriptional regulator compare
BWI76_RS00990 -4.8 -8.4 ketol-acid reductoisomerase compare
BWI76_RS18925 -4.7 -7.8 histidinol dehydrogenase compare
BWI76_RS04645 -4.7 -5.7 3-dehydroquinase compare
BWI76_RS04160 -4.7 -5.0 phosphoserine phosphatase compare
BWI76_RS18930 -4.6 -5.3 histidinol-phosphate transaminase compare
BWI76_RS09910 -4.4 -15.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS01610 -4.4 -6.4 phosphoribosylamine--glycine ligase compare
BWI76_RS04465 -4.4 -5.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS07065 -4.4 -7.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS22690 -4.3 -5.1 adenylyl-sulfate kinase compare
BWI76_RS18950 -4.2 -3.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS08385 -4.2 -4.9 citrate (Si)-synthase compare
BWI76_RS23360 -4.1 -5.2 diaminopimelate decarboxylase compare
BWI76_RS00850 -3.9 -9.5 acetylglutamate kinase compare
BWI76_RS25600 -3.9 -1.7 tRNA-Thr compare
BWI76_RS05835 -3.9 -3.7 gamma-glutamyl-phosphate reductase compare
BWI76_RS00180 -3.8 -2.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS23920 -3.7 -4.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS07070 -3.7 -5.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04245 -3.7 -14.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS05200 -3.7 -2.6 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS03010 -3.6 -9.3 ornithine carbamoyltransferase compare
BWI76_RS18935 -3.6 -10.6 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS10990 -3.6 -2.0 dihydroorotase compare
BWI76_RS01200 -3.6 -3.4 diaminopimelate epimerase compare
BWI76_RS22755 -3.5 -8.9 phosphoadenosine phosphosulfate reductase compare
BWI76_RS21465 -3.5 -6.6 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS18955 -3.5 -5.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS00785 -3.5 -6.0 cystathionine gamma-synthase compare
BWI76_RS25645 -3.4 -6.2 shikimate dehydrogenase compare
BWI76_RS00855 -3.4 -7.5 argininosuccinate lyase compare
BWI76_RS05840 -3.4 -5.5 glutamate 5-kinase compare
BWI76_RS00400 -3.4 -2.3 glutamine synthetase compare
BWI76_RS04250 -3.3 -9.5 homoserine kinase compare
BWI76_RS23230 -3.3 -4.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS04675 -3.3 -7.5 3-isopropylmalate dehydrogenase compare
BWI76_RS22765 -3.3 -15.0 sulfite reductase subunit alpha compare
BWI76_RS25115 -3.3 -7.5 argininosuccinate synthase compare
BWI76_RS02735 -3.3 -6.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS20435 -3.3 -1.9 chorismate synthase compare
BWI76_RS00975 -3.2 -9.7 dihydroxy-acid dehydratase compare
BWI76_RS23220 -3.2 -5.6 amino-acid N-acetyltransferase compare
BWI76_RS00845 -3.2 -8.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS21480 -3.2 -7.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS00980 -3.1 -11.3 PLP-dependent threonine dehydratase compare
BWI76_RS00805 -3.1 -4.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS22760 -3.1 -8.2 sulfite reductase subunit beta compare
BWI76_RS00965 -2.9 -1.8 acetolactate synthase 2 small subunit compare
BWI76_RS01210 -2.9 -3.9 tyrosine recombinase XerC compare
BWI76_RS04665 -2.9 -18.1 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01655 -2.9 -7.6 homoserine O-succinyltransferase compare
BWI76_RS27390 -2.8 -4.0 ribonuclease PH compare
BWI76_RS04510 -2.8 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS00985 -2.7 -7.9 transcriptional regulator IlvY compare
BWI76_RS18920 -2.7 -3.8 ATP phosphoribosyltransferase compare
BWI76_RS26000 -2.6 -6.8 aspartate aminotransferase family protein compare
BWI76_RS04670 -2.6 -9.9 3-isopropylmalate dehydratase large subunit compare
BWI76_RS09645 -2.6 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS04240 -2.6 -3.7 thr operon leader peptide compare
BWI76_RS04680 -2.5 -9.4 2-isopropylmalate synthase compare
BWI76_RS01800 -2.4 -3.4 glucose-6-phosphate isomerase compare
BWI76_RS04685 -2.4 -11.0 putative leucine operon leader peptide compare
BWI76_RS09660 -2.4 -2.8 DNA translocase FtsK compare
BWI76_RS11845 -2.4 -3.8 tryptophan synthase subunit beta compare
BWI76_RS20650 -2.0 -1.4 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS02410 -2.0 -2.8 EF-P beta-lysylation protein EpmB compare
BWI76_RS26055 -2.0 -7.8 siroheme synthase compare
BWI76_RS11855 -1.8 -4.7 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS22695 -1.8 -5.0 sulfate adenylyltransferase compare
BWI76_RS09655 -1.8 -5.6 leucine-responsive regulatory protein compare
BWI76_RS11840 -1.7 -4.6 tryptophan synthase subunit alpha compare
BWI76_RS11850 -1.7 -8.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS25335 -1.7 -5.0 stringent starvation protein A compare
BWI76_RS21310 -1.7 -1.6 DNA repair protein RecO compare
BWI76_RS11515 -1.7 -1.8 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS09970 -1.7 -3.1 porin OmpA compare
BWI76_RS23885 -1.7 -2.0 2-octaprenylphenol hydroxylase compare
BWI76_RS17675 -1.5 -1.8 hypothetical protein compare
BWI76_RS23480 -1.5 -8.6 EAL domain-containing protein compare
BWI76_RS21370 -1.5 -2.5 ATP-dependent RNA helicase SrmB compare
BWI76_RS14670 -1.5 -2.4 hypothetical protein compare
BWI76_RS15115 -1.5 -5.0 MFS transporter compare
BWI76_RS27820 -1.5 -2.2 ilvB operon leader peptide IvbL compare
BWI76_RS19870 -1.5 -3.0 malate:quinone oxidoreductase compare
BWI76_RS00960 -1.5 -4.2 acetolactate synthase 2 catalytic subunit compare
BWI76_RS04305 -1.4 -1.2 molecular chaperone DnaJ compare
BWI76_RS18605 -1.4 -1.4 oxidoreductase molybdopterin-binding protein compare
BWI76_RS11860 -1.4 -4.4 anthranilate synthase component I compare
BWI76_RS01275 -1.4 -6.3 LysR family transcriptional regulator compare
BWI76_RS26570 -1.4 -2.6 anion permease compare
BWI76_RS20440 -1.3 -1.3 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS11820 -1.3 -1.4 short-chain dehydrogenase/reductase SDR compare
BWI76_RS15435 -1.3 -1.7 hypothetical protein compare
BWI76_RS14770 -1.3 -1.6 PTS IIA 2 domain protein compare
BWI76_RS19375 -1.3 -1.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS08665 -1.3 -5.8 6-phosphogluconolactonase compare
BWI76_RS16000 -1.3 -1.6 multidrug transporter subunit MdtI compare
BWI76_RS19865 -1.2 -1.8 ecotin compare
BWI76_RS24600 -1.2 -5.2 dihydroxyacetone kinase compare
BWI76_RS24485 -1.2 -1.9 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS15215 -1.2 -1.2 N-acetyltransferase compare
BWI76_RS24575 -1.2 -1.9 hypothetical protein compare
BWI76_RS19010 -1.2 -2.8 polysaccharide pyruvyl transferase yvff compare
BWI76_RS15620 -1.2 -1.9 hypothetical protein compare
BWI76_RS11200 -1.2 -3.1 transpeptidase compare
BWI76_RS15835 -1.2 -1.3 hypothetical protein compare
BWI76_RS14625 -1.2 -1.3 protein TolA compare
BWI76_RS02530 -1.2 -1.2 tRNA dimethylallyltransferase compare
BWI76_RS06485 -1.1 -2.7 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS25065 -1.1 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS21580 -1.1 -2.0 SsrA-binding protein compare
BWI76_RS12235 -1.1 -1.5 hypothetical protein compare
BWI76_RS08980 -1.1 -1.3 DNA starvation/stationary phase protection protein compare
BWI76_RS17860 -1.1 -2.0 YoaH family protein compare
BWI76_RS26405 -1.1 -1.3 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS00355 -1.1 -3.1 DNA polymerase I compare
BWI76_RS12225 -1.1 -2.9 hypothetical protein compare
BWI76_RS01185 -1.1 -1.7 adenylate cyclase compare
BWI76_RS07820 -1.1 -1.9 S-methyl-5-thioribose kinase compare
BWI76_RS20640 -1.1 -2.8 cysteine synthase A compare
BWI76_RS04715 -1.1 -2.5 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS26620 -1.1 -1.1 Fe-S biogenesis protein NfuA compare
BWI76_RS01220 -1.0 -4.8 DNA-dependent helicase II compare
BWI76_RS12330 -1.0 -4.0 hypothetical protein compare
BWI76_RS09635 -1.0 -2.1 amino acid ABC transporter ATP-binding protein compare
BWI76_RS11150 -1.0 -1.6 membrane protein compare
BWI76_RS07740 -1.0 -1.8 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS08750 -1.0 -1.2 kinase inhibitor compare
BWI76_RS22700 -1.0 -2.2 sulfate adenylyltransferase subunit 2 compare
BWI76_RS06765 -1.0 -1.8 transcriptional regulator compare
BWI76_RS05570 -1.0 -1.1 hypothetical protein compare
BWI76_RS04530 -1.0 -1.3 peptidylprolyl isomerase SurA compare
BWI76_RS26590 -1.0 -1.4 transcriptional regulator compare
BWI76_RS06680 -1.0 -1.0 hypothetical protein compare
BWI76_RS15600 -0.9 -2.1 hypothetical protein compare
BWI76_RS10835 -0.9 -1.4 hypothetical protein compare
BWI76_RS23015 -0.9 -1.6 cobalt transporter ATP-binding subunit compare
BWI76_RS18855 -0.9 -2.4 cysteine desulfurase NifS compare
BWI76_RS15660 -0.9 -1.2 hypothetical protein compare
BWI76_RS19935 -0.9 -1.6 hypothetical protein compare
BWI76_RS17945 -0.9 -1.2 hypothetical protein compare
BWI76_RS23915 -0.9 -2.0 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS14915 -0.9 -2.3 hypothetical protein compare
BWI76_RS12790 -0.9 -1.3 lactate dehydrogenase compare
BWI76_RS09025 -0.9 -1.7 GntR family transcriptional regulator compare
BWI76_RS24075 -0.9 -2.9 glutathione synthase compare
BWI76_RS09650 -0.9 -3.4 hypothetical protein compare
BWI76_RS12375 -0.9 -2.0 DNA-invertase hin compare
BWI76_RS20490 -0.9 -2.3 hypothetical protein compare
BWI76_RS25505 -0.9 -3.2 RNase E specificity factor CsrD compare
BWI76_RS21165 -0.9 -1.3 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS22705 -0.9 -3.6 siroheme synthase compare
BWI76_RS24080 -0.9 -1.6 DUF179 domain-containing protein compare
BWI76_RS15110 -0.9 -5.8 putative excinuclease ABC subunit A compare
BWI76_RS19025 -0.9 -5.8 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS27875 -0.9 -1.0 membrane protein compare
BWI76_RS00970 -0.9 -1.8 branched chain amino acid aminotransferase compare
BWI76_RS27430 -0.8 -1.3 (p)ppGpp synthetase compare
BWI76_RS18550 -0.8 -1.3 tRNA-Asn compare
BWI76_RS15640 -0.8 -3.9 hypothetical protein compare
BWI76_RS13240 -0.8 -0.9 hypothetical protein compare
BWI76_RS26630 -0.8 -2.8 pimeloyl-[acyl-carrier protein] methyl ester esterase compare
BWI76_RS06830 -0.8 -3.3 recombination protein RecR compare
BWI76_RS15630 -0.8 -3.4 hypothetical protein compare
BWI76_RS03295 -0.8 -1.8 transposase compare
BWI76_RS02050 -0.8 -1.5 CidA/LrgA family protein compare
BWI76_RS01580 -0.8 -2.7 hypothetical protein compare
BWI76_RS17875 -0.8 -2.3 L-serine ammonia-lyase compare
BWI76_RS14410 -0.8 -2.2 hypothetical protein compare
BWI76_RS01870 -0.8 -3.1 diacylglycerol kinase compare
BWI76_RS08730 -0.8 -2.3 histidine utilization repressor compare
BWI76_RS24945 -0.8 -1.0 glutamine amidotransferase compare
BWI76_RS14935 -0.8 -1.0 NIPSNAP family containing protein compare
BWI76_RS15830 -0.8 -2.4 hypothetical protein compare
BWI76_RS17390 -0.8 -1.2 DsrE family protein compare
BWI76_RS15655 -0.8 -3.2 hypothetical protein compare
BWI76_RS04100 -0.8 -2.0 peptide chain release factor 3 compare
BWI76_RS23745 -0.8 -3.2 arsenate reductase compare
BWI76_RS13755 -0.8 -1.0 hypothetical protein compare
BWI76_RS15670 -0.8 -2.7 hypothetical protein compare
BWI76_RS04270 -0.8 -2.7 transaldolase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 27-day exudates across organisms