Experiment set10IT069 for Cupriavidus basilensis FW507-4G11

Compare to:

Hexanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS37400 +2.3 2.0 6-phosphogluconolactonase compare
RR42_RS01630 +1.8 2.1 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS01795 +1.7 15.1 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS32740 +1.6 2.0 enoyl-CoA hydratase compare
RR42_RS05620 +1.6 3.0 esterase compare
RR42_RS32085 +1.5 1.9 hypothetical protein compare
RR42_RS30410 +1.3 1.9 hypothetical protein compare
RR42_RS19750 +1.3 1.6 MBL fold metallo-hydrolase compare
RR42_RS21150 +1.2 2.6 hypothetical protein compare
RR42_RS13620 +1.2 1.3 ferredoxin compare
RR42_RS32805 +1.2 2.8 damage-inducible protein compare
RR42_RS30320 +1.2 1.7 hypothetical protein compare
RR42_RS22135 +1.1 2.9 cytochrome C compare
RR42_RS27790 +1.1 2.6 LuxR family transcriptional regulator compare
RR42_RS20310 +1.1 1.2 copper-binding protein compare
RR42_RS04770 +1.1 1.4 methylglyoxal synthase compare
RR42_RS12240 +1.0 1.4 hypothetical protein compare
RR42_RS23565 +1.0 0.9 flagellar motor switch protein G compare
RR42_RS21380 +1.0 1.8 cupin compare
RR42_RS20195 +1.0 0.8 ATPase F0F1 compare
RR42_RS16310 +1.0 1.9 hypothetical protein compare
RR42_RS26265 +1.0 1.2 hypothetical protein compare
RR42_RS33455 +1.0 2.7 endoribonuclease L-PSP compare
RR42_RS16910 +1.0 1.7 histidine utilization protein HutD compare
RR42_RS27290 +1.0 3.0 hypothetical protein compare
RR42_RS28695 +0.9 2.0 hypothetical protein compare
RR42_RS30170 +0.9 3.9 aldolase compare
RR42_RS08220 +0.9 1.7 hypothetical protein compare
RR42_RS21690 +0.9 1.2 acetyltransferase compare
RR42_RS30735 +0.9 1.6 tRNA-Met compare
RR42_RS00430 +0.9 2.8 histidine kinase compare
RR42_RS23920 +0.9 2.5 hypothetical protein compare
RR42_RS23845 +0.9 1.5 hypothetical protein compare
RR42_RS08045 +0.9 2.9 hypothetical protein compare
RR42_RS10415 +0.9 1.2 hypothetical protein compare
RR42_RS01785 +0.9 2.7 PTS fructose transporter subunit IIA compare
RR42_RS00655 +0.9 2.5 membrane protein compare
RR42_RS26925 +0.9 1.8 membrane protein compare
RR42_RS06345 +0.9 3.1 hypothetical protein compare
RR42_RS06655 +0.9 2.5 hypothetical protein compare
RR42_RS09565 +0.8 2.3 hypothetical protein compare
RR42_RS15675 +0.8 3.0 heat-shock protein HslJ compare
RR42_RS03785 +0.8 2.3 membrane protein compare
RR42_RS35115 +0.8 2.5 riboflavin synthase subunit beta compare
RR42_RS33815 +0.8 0.9 isochorismatase compare
RR42_RS18730 +0.8 0.9 hypothetical protein compare
RR42_RS16175 +0.8 1.3 enoyl-CoA hydratase compare
RR42_RS10195 +0.8 2.8 hypothetical protein compare
RR42_RS10545 +0.8 2.8 NADPH:quinone dehydrogenase compare
RR42_RS34680 +0.8 1.4 short-chain dehydrogenase compare
RR42_RS28400 +0.8 2.3 CoA-transferase compare
RR42_RS04015 +0.8 1.1 RNA polymerase sigma factor compare
RR42_RS35110 +0.8 1.7 hypothetical protein compare
RR42_RS21040 +0.8 0.6 hypothetical protein compare
RR42_RS24880 +0.7 3.0 hypothetical protein compare
RR42_RS09470 +0.7 1.9 2-dehydro-3-deoxygluconokinase compare
RR42_RS12305 +0.7 0.7 hypothetical protein compare
RR42_RS34945 +0.7 1.4 bb3-type cytochrome oxidase subunit III compare
RR42_RS15245 +0.7 2.0 alpha/beta hydrolase compare
RR42_RS05100 +0.7 2.0 acetaldehyde dehydrogenase compare
RR42_RS04060 +0.7 1.6 hypothetical protein compare
RR42_RS06120 +0.7 1.7 transcriptional regulator compare
RR42_RS11655 +0.7 1.2 heat-shock protein Hsp20 compare
RR42_RS12580 +0.7 1.6 phosphate transport regulator compare
RR42_RS06860 +0.7 1.0 hypothetical protein compare
RR42_RS29365 +0.7 1.3 ArsR family transcriptional regulator compare
RR42_RS07630 +0.7 0.9 methyltransferase type 12 compare
RR42_RS18475 +0.7 2.2 membrane protein compare
RR42_RS30285 +0.7 1.8 amidohydrolase compare
RR42_RS22910 +0.7 2.7 nitrate ABC transporter ATPase compare
RR42_RS20260 +0.7 1.7 hypothetical protein compare
RR42_RS28720 +0.7 1.0 hypothetical protein compare
RR42_RS13720 +0.7 2.7 oxidoreductase compare
RR42_RS34175 +0.7 1.6 enoyl-CoA hydratase compare
RR42_RS23130 +0.7 1.7 bleomycin resistance protein compare
RR42_RS36795 +0.7 1.9 fumarate hydratase compare
RR42_RS17320 +0.7 1.5 murein hydrolase transporter LrgA compare
RR42_RS13640 +0.7 1.6 MarR family transcriptional regulator compare
RR42_RS23370 +0.7 2.0 flagellar motor switch protein FliN compare
RR42_RS34655 +0.7 3.2 LacI family transcriptional regulator compare
RR42_RS07950 +0.7 3.2 ABC transporter substrate-binding protein compare
RR42_RS20405 +0.7 3.0 2-dehydropantoate 2-reductase compare
RR42_RS12490 +0.7 2.0 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS22925 +0.6 3.0 RND transporter compare
RR42_RS17495 +0.6 2.1 hypothetical protein compare
RR42_RS02545 +0.6 1.8 nitrate ABC transporter ATP-binding protein compare
RR42_RS24900 +0.6 2.4 NAD-dependent dehydratase compare
RR42_RS32975 +0.6 0.9 LysR family transcriptional regulator compare
RR42_RS23140 +0.6 1.2 peptidylprolyl isomerase compare
RR42_RS16765 +0.6 2.2 glycerol kinase compare
RR42_RS37375 +0.6 1.4 short-chain dehydrogenase compare
RR42_RS10565 +0.6 1.7 alpha/beta hydrolase compare
RR42_RS20655 +0.6 3.2 multidrug transporter compare
RR42_RS12010 +0.6 2.3 ABC transporter compare
RR42_RS07410 +0.6 3.6 peptidase S11 compare
RR42_RS09595 +0.6 1.8 histidine kinase compare
RR42_RS37160 +0.6 2.8 DNA-binding protein compare
RR42_RS03685 +0.6 1.7 GTP cyclohydrolase compare
RR42_RS22940 +0.6 1.6 TetR family transcriptional regulator compare
RR42_RS11785 +0.6 0.4 NfeD-like family protein 1 compare
RR42_RS25650 +0.6 1.2 hypothetical protein compare
RR42_RS19895 +0.6 1.0 elongation factor GreAB compare
RR42_RS09850 +0.6 1.2 hypothetical protein compare
RR42_RS30955 +0.6 2.9 histidine kinase compare
RR42_RS37055 +0.6 1.9 hypothetical protein compare
RR42_RS07440 +0.6 1.1 hypothetical protein compare
RR42_RS34025 +0.6 3.1 bacteriocin-protection protein compare
RR42_RS36835 +0.6 1.5 cytochrome P450 compare
RR42_RS35980 +0.6 2.3 membrane protein compare
RR42_RS20640 +0.6 2.2 TetR family transcriptional regulator compare
RR42_RS29020 +0.6 1.9 hypothetical protein compare
RR42_RS06510 +0.6 0.9 hypothetical protein compare
RR42_RS24905 +0.6 1.4 alpha/beta hydrolase compare
RR42_RS00725 +0.6 2.5 hypothetical protein compare
RR42_RS23910 +0.6 1.9 hypothetical protein compare
RR42_RS17560 +0.6 4.2 Fur family transcriptional regulator compare
RR42_RS26610 +0.6 2.5 hypothetical protein compare
RR42_RS23110 +0.6 0.8 isochorismatase compare
RR42_RS32765 +0.6 2.3 hypothetical protein compare
RR42_RS22150 +0.6 1.7 thiol-disulfide isomerase compare
RR42_RS30625 +0.6 1.0 cob(II)yrinic acid a,c-diamide reductase compare
RR42_RS32775 +0.6 1.3 hypothetical protein compare
RR42_RS29515 +0.6 1.6 hypothetical protein compare
RR42_RS02685 +0.6 1.6 phosphoglycerate mutase compare
RR42_RS01365 +0.6 1.8 hypothetical protein compare
RR42_RS19950 +0.5 2.0 MFS transporter compare
RR42_RS00525 +0.5 1.6 MarR family transcriptional regulator compare
RR42_RS07170 +0.5 1.6 hypothetical protein compare
RR42_RS07130 +0.5 1.2 hypothetical protein compare
RR42_RS24500 +0.5 3.1 hypothetical protein compare
RR42_RS26200 +0.5 0.9 hypothetical protein compare
RR42_RS36380 +0.5 2.3 LuxR family transcriptional regulator compare
RR42_RS03720 +0.5 2.3 heat-shock protein compare
RR42_RS24820 +0.5 1.3 hypothetical protein compare
RR42_RS14990 +0.5 1.9 membrane protein compare
RR42_RS34745 +0.5 1.6 hypothetical protein compare
RR42_RS31955 +0.5 1.9 CoA-transferase compare
RR42_RS15120 +0.5 0.9 4-oxalocrotonate tautomerase compare
RR42_RS16565 +0.5 1.8 hypothetical protein compare
RR42_RS31435 +0.5 0.8 hypothetical protein compare
RR42_RS33375 +0.5 2.0 cupin compare
RR42_RS36590 +0.5 2.1 hypothetical protein compare
RR42_RS28735 +0.5 1.7 hemolysin III compare
RR42_RS15160 +0.5 2.0 membrane protein compare
RR42_RS14625 +0.5 0.9 formimidoylglutamase compare
RR42_RS23595 +0.5 1.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS24790 +0.5 0.6 LysR family transcriptional regulator compare
RR42_RS11090 +0.5 1.5 nicotinamidase compare
RR42_RS15550 +0.5 2.2 pilus assembly protein compare
RR42_RS20285 +0.5 1.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS06880 +0.5 1.3 hypothetical protein compare
RR42_RS31910 +0.5 1.1 acyl-CoA dehydrogenase compare
RR42_RS09375 +0.5 0.6 taurine dioxygenase compare
RR42_RS23820 +0.5 2.1 hypothetical protein compare
RR42_RS05655 +0.5 1.8 urease accessory protein UreD compare
RR42_RS35915 +0.5 2.2 beta-ketoadipyl CoA thiolase compare
RR42_RS11065 +0.5 1.4 phenylacetic acid degradation protein compare
RR42_RS28155 +0.5 1.8 hypothetical protein compare
RR42_RS08620 +0.5 1.5 membrane protein compare
RR42_RS09780 +0.5 1.6 hypothetical protein compare
RR42_RS35700 +0.5 1.6 flagellar basal body rod protein FlgG compare
RR42_RS26370 +0.5 1.0 tautomerase compare
RR42_RS27895 +0.5 2.1 acetaldehyde dehydrogenase compare
RR42_RS21015 +0.5 2.5 mannose-1-phosphate guanyltransferase compare
RR42_RS17580 +0.5 2.1 spermidine synthase compare
RR42_RS31825 +0.5 2.2 3-oxoacyl-ACP reductase compare
RR42_RS15090 +0.5 1.6 DNA helicase compare
RR42_RS36570 +0.5 1.0 prevent-host-death protein compare
RR42_RS16625 +0.5 1.7 hypothetical protein compare
RR42_RS03500 +0.5 2.7 hypothetical protein compare
RR42_RS01485 +0.5 1.3 phosphonate transporter compare
RR42_RS25705 +0.5 2.5 hypothetical protein compare
RR42_RS05965 +0.5 1.0 malonic semialdehyde reductase compare
RR42_RS31510 +0.5 2.7 LysR family transcriptional regulator compare
RR42_RS02470 +0.5 1.1 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS26740 +0.5 0.6 protein serine/threonine phosphatase compare
RR42_RS33515 +0.5 2.4 hypothetical protein compare
RR42_RS30295 +0.5 1.8 ABC transporter substrate-binding protein compare
RR42_RS02280 +0.5 1.4 ABC transporter permease compare
RR42_RS28615 +0.5 1.3 ABC transporter substrate-binding protein compare
RR42_RS32345 +0.5 1.6 hypothetical protein compare
RR42_RS06830 +0.5 1.0 hypothetical protein compare
RR42_RS00395 +0.5 2.1 AraC family transcriptional regulator compare
RR42_RS24460 +0.5 1.4 hypothetical protein compare
RR42_RS14805 +0.5 2.1 glutamyl-Q tRNA(Asp) ligase compare
RR42_RS35865 +0.5 2.3 membrane protein compare
RR42_RS19770 +0.5 2.1 LysR family transcriptional regulator compare
RR42_RS04780 +0.5 1.0 membrane protein compare
RR42_RS21180 +0.5 1.3 GNAT family acetyltransferase compare
RR42_RS09995 +0.5 2.5 MBL fold metallo-hydrolase compare
RR42_RS22070 +0.5 1.4 type IV secretion protein Rhs compare
RR42_RS02540 +0.5 1.5 taurine ABC transporter permease compare
RR42_RS17830 +0.5 2.4 ABC transporter substrate-binding protein compare
RR42_RS25030 +0.5 0.6 ABC transporter permease compare
RR42_RS13370 +0.5 1.8 microcin ABC transporter ATP-binding protein compare
RR42_RS32965 +0.5 1.6 salicylaldehyde dehydrogenase compare
RR42_RS33600 +0.5 0.6 oxidoreductase compare
RR42_RS07030 +0.5 1.7 hypothetical protein compare
RR42_RS05945 +0.5 0.9 thioredoxin compare
RR42_RS26385 +0.5 2.3 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Hexanoic acid in Cupriavidus basilensis FW507-4G11

For carbon source Hexanoic acid across organisms