Experiment set10IT066 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS06485 -5.9 -4.1 chorismate synthase compare
RR42_RS30655 -5.8 -4.0 LysR family transcriptional regulator compare
RR42_RS11275 -5.8 -5.6 3-methylitaconate isomerase compare
RR42_RS11270 -5.8 -13.4 aconitate hydratase compare
RR42_RS16255 -5.3 -6.2 sulfate adenylyltransferase compare
RR42_RS14390 -5.2 -3.5 3-isopropylmalate dehydratase compare
RR42_RS16250 -5.1 -6.1 sulfate adenylyltransferase compare
RR42_RS18305 -5.0 -3.4 anthranilate phosphoribosyltransferase compare
RR42_RS19005 -4.9 -5.8 3-dehydroquinate synthase compare
RR42_RS05990 -4.7 -9.0 aromatic amino acid aminotransferase compare
RR42_RS11260 -4.6 -7.0 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
RR42_RS05860 -4.6 -3.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS11255 -4.5 -10.4 Fis family transcriptional regulator compare
RR42_RS01160 -4.4 -10.3 homoserine O-acetyltransferase compare
RR42_RS14320 -4.4 -4.3 O-succinylhomoserine sulfhydrylase compare
RR42_RS16280 -4.4 -9.7 transcriptional regulator compare
RR42_RS16275 -4.2 -5.0 membrane protein compare
RR42_RS01385 -4.2 -3.6 5,10-methylenetetrahydrofolate reductase compare
RR42_RS16265 -4.1 -5.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS04475 -3.9 -9.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS11790 -3.8 -10.5 phosphoenolpyruvate synthase compare
RR42_RS30660 -3.6 -9.5 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS14365 -3.5 -2.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS02085 -3.5 -7.8 RNA polymerase subunit sigma-54 compare
RR42_RS18295 -3.5 -10.4 anthranilate synthase component I compare
RR42_RS12925 -3.4 -3.2 ATPase compare
RR42_RS14360 -3.2 -1.9 tryptophan synthase subunit alpha compare
RR42_RS16245 -3.2 -5.3 uroporphyrin-III methyltransferase compare
RR42_RS14400 -3.2 -4.7 isopropylmalate isomerase compare
RR42_RS14385 -3.2 -5.6 3-isopropylmalate dehydrogenase compare
RR42_RS19010 -3.0 -5.4 shikimate kinase compare
RR42_RS01845 -2.9 -2.5 glycerol-3-phosphate dehydrogenase compare
RR42_RS31530 -2.8 -2.1 histidine kinase compare
RR42_RS18990 -2.8 -16.9 glutamate synthase compare
RR42_RS16270 -2.8 -7.7 sulfite reductase compare
RR42_RS00715 -2.7 -1.8 ferritin compare
RR42_RS18985 -2.6 -7.6 glutamate synthase compare
RR42_RS16240 -2.6 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS18300 -2.5 -3.7 anthranilate synthase subunit II compare
RR42_RS02810 -2.5 -3.4 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS04470 -2.5 -5.2 prephenate dehydrogenase compare
RR42_RS23515 -2.5 -5.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS13910 -2.4 -6.5 glutamate racemase compare
RR42_RS07365 -2.3 -3.1 pyruvate dehydrogenase compare
RR42_RS17645 -2.2 -5.9 shikimate dehydrogenase compare
RR42_RS28885 -2.2 -5.9 membrane protein compare
RR42_RS18855 -2.2 -1.5 preprotein translocase compare
RR42_RS02775 -2.1 -1.7 molecular chaperone SurA compare
RR42_RS15770 -2.1 -3.9 hypothetical protein compare
RR42_RS06240 -2.1 -1.9 tryptophan--tRNA ligase compare
RR42_RS02500 -2.0 -2.0 TetR family transcriptional regulator compare
RR42_RS15745 -2.0 -6.1 group1 glycosyl transferase compare
RR42_RS05420 -2.0 -2.3 membrane protein compare
RR42_RS33255 -2.0 -4.4 protein-tyrosine phosphatase compare
RR42_RS06095 -2.0 -4.6 hypothetical protein compare
RR42_RS04460 -2.0 -4.6 chorismate mutase compare
RR42_RS34815 -2.0 -5.1 diguanylate cyclase compare
RR42_RS37400 -2.0 -0.8 6-phosphogluconolactonase compare
RR42_RS19885 -2.0 -1.8 aminoglycoside transporter compare
RR42_RS11795 -2.0 -1.6 PEP synthetase regulatory protein compare
RR42_RS07555 -1.9 -2.1 potassium transporter Kup compare
RR42_RS18270 -1.9 -1.8 murein transglycosylase compare
RR42_RS17020 -1.9 -3.9 quinolinate synthetase compare
RR42_RS03365 -1.8 -1.2 fructose ABC transporter, permease component (FrcC) (from data) compare
RR42_RS23125 -1.7 -1.8 hypothetical protein compare
RR42_RS14055 -1.7 -2.5 elongation factor 4 compare
RR42_RS21220 -1.7 -1.1 iron transporter FeoB compare
RR42_RS03360 -1.6 -3.3 fructose ABC transporter, ATPase component (FrcA) (from data) compare
RR42_RS33260 -1.6 -6.4 multidrug MFS transporter compare
RR42_RS15785 -1.6 -8.2 glycosyl transferase family 28 compare
RR42_RS07380 -1.6 -3.4 dihydrolipoamide dehydrogenase compare
RR42_RS27570 -1.6 -3.2 murein hydrolase effector protein compare
RR42_RS19090 -1.6 -1.5 cytochrome C compare
RR42_RS12050 -1.6 -6.1 DNA polymerase compare
RR42_RS30930 -1.6 -4.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
RR42_RS00115 -1.6 -1.5 hypothetical protein compare
RR42_RS34940 -1.5 -2.0 bb3-type cytochrome oxidase subunit IV compare
RR42_RS26265 -1.5 -1.1 hypothetical protein compare
RR42_RS02705 -1.5 -2.2 Holliday junction DNA helicase RuvA compare
RR42_RS15740 -1.5 -1.0 hypothetical protein compare
RR42_RS30640 -1.5 -4.8 DNA mismatch repair protein MutT compare
RR42_RS20370 -1.5 -1.2 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS24605 -1.5 -7.9 TetR family transcriptional regulator compare
RR42_RS01290 -1.5 -7.8 thiamine biosynthesis protein ThiC compare
RR42_RS33250 -1.5 -4.9 tyrosine protein kinase compare
RR42_RS20205 -1.5 -2.1 chromosome partitioning protein compare
RR42_RS35110 -1.5 -1.7 hypothetical protein compare
RR42_RS04535 -1.4 -2.1 cysteine synthase compare
RR42_RS01380 -1.4 -2.0 membrane protein compare
RR42_RS15035 -1.4 -3.4 ZIP zinc transporter compare
RR42_RS04700 -1.4 -1.2 ribonuclease G compare
RR42_RS07360 -1.4 -2.0 ATPase compare
RR42_RS05955 -1.4 -1.1 hypothetical protein compare
RR42_RS13130 -1.4 -1.6 membrane protein compare
RR42_RS15905 -1.4 -6.8 phosphoenolpyruvate carboxylase compare
RR42_RS17880 -1.3 -1.3 hypothetical protein compare
RR42_RS25645 -1.3 -3.1 hypothetical protein compare
RR42_RS37330 -1.3 -5.0 1,4-D-glucanase compare
RR42_RS35875 -1.3 -6.1 UDP-galactose-4-epimerase compare
RR42_RS00940 -1.3 -6.1 biotin synthase compare
RR42_RS28315 -1.3 -3.0 GntR family transcriptional regulator compare
RR42_RS36170 -1.3 -2.7 hypothetical protein compare
RR42_RS31505 -1.3 -2.1 hypothetical protein compare
RR42_RS00420 -1.3 -4.7 hypothetical protein compare
RR42_RS13800 -1.3 -6.0 formyltetrahydrofolate deformylase compare
RR42_RS14985 -1.3 -1.5 30S ribosomal protein S21 compare
RR42_RS15710 -1.3 -4.3 LPS biosynthesis protein compare
RR42_RS03370 -1.3 -2.7 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS02440 -1.3 -1.0 membrane protein compare
RR42_RS20880 -1.2 -2.0 hypothetical protein compare
RR42_RS08180 -1.2 -1.4 hypothetical protein compare
RR42_RS15800 -1.2 -2.8 aldo/keto reductase compare
RR42_RS18310 -1.2 -1.2 indole-3-glycerol-phosphate synthase compare
RR42_RS24535 -1.2 -1.3 tRNA-Asn compare
RR42_RS06630 -1.2 -1.9 integration host factor subunit alpha compare
RR42_RS07245 -1.2 -2.0 hypothetical protein compare
RR42_RS33215 -1.2 -6.1 transferase compare
RR42_RS22230 -1.2 -1.5 hypothetical protein compare
RR42_RS01920 -1.2 -2.1 protoheme IX farnesyltransferase compare
RR42_RS27060 -1.2 -2.1 cation transporter compare
RR42_RS34650 -1.2 -3.5 LacI family transcriptional regulator compare
RR42_RS04420 -1.2 -2.1 required for efflux of an amino acid polymer (from data) compare
RR42_RS33240 -1.2 -8.3 GDP-L-fucose synthase compare
RR42_RS17010 -1.2 -7.9 L-aspartate oxidase compare
RR42_RS03385 -1.2 -4.2 sugar kinase compare
RR42_RS07605 -1.2 -4.1 poly-beta-hydroxybutyrate polymerase compare
RR42_RS21595 -1.2 -3.1 IclR family transcriptional regulator compare
RR42_RS09015 -1.1 -1.3 trigger factor compare
RR42_RS33235 -1.1 -5.4 GDP-mannose 4,6-dehydratase compare
RR42_RS20360 -1.1 -1.5 AsnC family transcriptional regulator compare
RR42_RS01435 -1.1 -1.1 short-chain dehydrogenase compare
RR42_RS32050 -1.1 -1.8 AraC family transcriptional regulator compare
RR42_RS22535 -1.1 -2.5 ArsR family transcriptional regulator compare
RR42_RS01820 -1.1 -3.2 peptidase S41 compare
RR42_RS22585 -1.1 -1.7 MarR family transcriptional regulator compare
RR42_RS11770 -1.1 -1.7 cyclase compare
RR42_RS08645 -1.1 -1.7 phage capsid scaffolding protein compare
RR42_RS21125 -1.1 -2.3 membrane protein compare
RR42_RS24790 -1.1 -0.9 LysR family transcriptional regulator compare
RR42_RS15775 -1.1 -3.6 N-acetylneuraminate synthase compare
RR42_RS03085 -1.0 -0.8 RecX family transcriptional regulator compare
RR42_RS33210 -1.0 -2.7 teichoic acid biosynthesis protein compare
RR42_RS08025 -1.0 -1.4 phage Gp37Gp68 compare
RR42_RS28065 -1.0 -1.4 ribose-phosphate pyrophosphokinase compare
RR42_RS03415 -1.0 -2.9 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS18850 -1.0 -1.3 preprotein translocase subunit TatC compare
RR42_RS08640 -1.0 -3.5 phage capsid protein compare
RR42_RS06545 -1.0 -0.8 thioesterase compare
RR42_RS26935 -1.0 -2.0 farnesyl-diphosphate farnesyltransferase compare
RR42_RS15755 -1.0 -1.6 acetyltransferase compare
RR42_RS33245 -1.0 -5.1 mannose-1-phosphate guanyltransferase compare
RR42_RS28525 -1.0 -3.0 PadR family transcriptional regulator compare
RR42_RS21435 -1.0 -1.6 hypothetical protein compare
RR42_RS06865 -1.0 -3.0 hypothetical protein compare
RR42_RS15810 -1.0 -1.4 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS07115 -0.9 -1.1 hypothetical protein compare
RR42_RS25200 -0.9 -2.5 TetR family transcriptional regulator compare
RR42_RS24040 -0.9 -2.0 hypothetical protein compare
RR42_RS08450 -0.9 -1.1 hypothetical protein compare
RR42_RS18995 -0.9 -5.1 transposase compare
RR42_RS33195 -0.9 -4.8 UDP-sugar lipid carrier transferase compare
RR42_RS27885 -0.9 -2.0 2-keto-4-pentenoate hydratase compare
RR42_RS25015 -0.9 -1.6 gluconolactonase compare
RR42_RS09790 -0.9 -1.4 ABC transporter compare
RR42_RS36325 -0.9 -2.2 esterase compare
RR42_RS35290 -0.9 -3.1 Fe-S oxidoreductase compare
RR42_RS08280 -0.9 -1.8 hypothetical protein compare
RR42_RS15380 -0.9 -1.5 kynurenine formamidase compare
RR42_RS14125 -0.9 -0.9 metal-binding protein compare
RR42_RS21095 -0.9 -2.8 GntR family transcriptional regulator compare
RR42_RS18385 -0.9 -1.4 hypothetical protein compare
RR42_RS16120 -0.9 -2.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
RR42_RS17105 -0.9 -5.5 Clp protease ClpX compare
RR42_RS06015 -0.9 -6.3 recombinase compare
RR42_RS21075 -0.9 -1.0 phosphoribosyltransferase compare
RR42_RS10310 -0.9 -1.6 NADPH:quinone reductase compare
RR42_RS27550 -0.9 -0.8 hypothetical protein compare
RR42_RS06875 -0.9 -1.2 hypothetical protein compare
RR42_RS16910 -0.9 -1.0 histidine utilization protein HutD compare
RR42_RS14965 -0.9 -2.7 hypothetical protein compare
RR42_RS35695 -0.9 -2.5 flagellar L-ring protein FlgH compare
RR42_RS08635 -0.8 -1.7 terminase compare
RR42_RS26660 -0.8 -2.3 LysR family transcriptional regulator compare
RR42_RS15735 -0.8 -4.2 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS03020 -0.8 -1.1 MarR family transcriptional regulator compare
RR42_RS14880 -0.8 -1.6 hypothetical protein compare
RR42_RS36495 -0.8 -2.1 enoyl-CoA hydratase compare
RR42_RS37320 -0.8 -1.3 hypothetical protein compare
RR42_RS36415 -0.8 -1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS03565 -0.8 -2.6 hypothetical protein compare
RR42_RS05920 -0.8 -1.9 HrcA family transcriptional regulator compare
RR42_RS17050 -0.8 -2.5 phosphoribosylglycinamide formyltransferase compare
RR42_RS36610 -0.8 -1.7 host specificity protein compare
RR42_RS15895 -0.8 -4.0 uroporphyrinogen III methyltransferase compare
RR42_RS33850 -0.8 -1.7 hypothetical protein compare
RR42_RS34585 -0.8 -1.1 LysR family transcriptional regulator compare
RR42_RS12085 -0.8 -1.4 glyoxalase compare
RR42_RS06735 -0.8 -1.3 hypothetical protein compare
RR42_RS10920 -0.8 -1.4 hypothetical protein compare
RR42_RS25655 -0.8 -4.8 pyruvate carboxylase compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source Sodium propionate across organisms