Experiment set10IT065 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS23240 -4.4 -5.2 exonuclease V subunit gamma compare
BWI76_RS01210 -4.3 -5.8 tyrosine recombinase XerC compare
BWI76_RS23230 -3.7 -4.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS09645 -3.7 -3.0 thioredoxin-disulfide reductase compare
BWI76_RS09660 -3.6 -4.8 DNA translocase FtsK compare
BWI76_RS04715 -3.2 -3.6 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS01200 -2.4 -2.6 diaminopimelate epimerase compare
BWI76_RS02410 -2.3 -2.7 EF-P beta-lysylation protein EpmB compare
BWI76_RS02530 -2.3 -3.4 tRNA dimethylallyltransferase compare
BWI76_RS15115 -2.3 -9.5 MFS transporter compare
BWI76_RS08535 -2.2 -3.3 translocation protein TolB compare
BWI76_RS21580 -2.2 -2.4 SsrA-binding protein compare
BWI76_RS05200 -2.1 -3.1 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS00345 -2.1 -4.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS09190 -1.9 -5.1 hypothetical protein compare
BWI76_RS00400 -1.7 -1.6 glutamine synthetase compare
BWI76_RS25335 -1.6 -4.4 stringent starvation protein A compare
BWI76_RS21370 -1.6 -2.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS15835 -1.5 -1.1 hypothetical protein compare
BWI76_RS15110 -1.4 -10.2 putative excinuclease ABC subunit A compare
BWI76_RS04100 -1.4 -4.0 peptide chain release factor 3 compare
BWI76_RS08525 -1.4 -4.9 colicin transporter compare
BWI76_RS09560 -1.3 -2.1 DoxX family membrane protein compare
BWI76_RS20355 -1.3 -4.6 colicin V production protein compare
BWI76_RS25425 -1.2 -1.6 arginine repressor compare
BWI76_RS01115 -1.2 -3.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS11965 -1.2 -4.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS05260 -1.2 -1.7 chaperone compare
BWI76_RS06490 -1.2 -4.8 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS20650 -1.2 -1.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS15825 -1.2 -2.8 hypothetical protein compare
BWI76_RS08720 -1.2 -2.5 imidazolonepropionase compare
BWI76_RS09910 -1.2 -9.4 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS04050 -1.2 -3.8 hydroxamate siderophore iron reductase FhuF compare
BWI76_RS26390 -1.1 -4.3 cell division protein FtsX compare
BWI76_RS19035 -1.1 -4.9 dTDP-rhamnosyl transferase compare
BWI76_RS25070 -1.1 -1.4 hypothetical protein compare
BWI76_RS15435 -1.1 -1.9 hypothetical protein compare
BWI76_RS11515 -1.1 -1.4 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS16275 -1.1 -2.4 fumarate hydratase FumA compare
BWI76_RS11675 -1.1 -2.6 arginine N-succinyltransferase compare
BWI76_RS24900 -1.1 -1.5 DeoR family transcriptional regulator compare
BWI76_RS21140 -1.1 -2.2 molecular chaperone HscA compare
BWI76_RS01090 -1.0 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS06475 -1.0 -1.4 protoheme IX farnesyltransferase compare
BWI76_RS15715 -1.0 -2.7 putative ninG protein compare
BWI76_RS01220 -1.0 -4.1 DNA-dependent helicase II compare
BWI76_RS26775 -1.0 -3.7 endo-1,4-D-glucanase compare
BWI76_RS09520 -1.0 -2.1 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS04955 -1.0 -1.9 hypoxanthine phosphoribosyltransferase compare
BWI76_RS00355 -1.0 -2.6 DNA polymerase I compare
BWI76_RS19585 -1.0 -2.0 gentisate 1,2-dioxygenase compare
BWI76_RS01185 -1.0 -1.5 adenylate cyclase compare
BWI76_RS19850 -0.9 -2.5 tRNA-Pro compare
BWI76_RS10700 -0.9 -3.5 XRE family transcriptional regulator compare
BWI76_RS27165 -0.9 -2.7 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS25600 -0.9 -0.9 tRNA-Thr compare
BWI76_RS06485 -0.9 -2.4 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS15950 -0.9 -2.1 dethiobiotin synthase compare
BWI76_RS26570 -0.9 -2.0 anion permease compare
BWI76_RS10990 -0.9 -1.7 dihydroorotase compare
BWI76_RS20435 -0.9 -1.5 chorismate synthase compare
BWI76_RS21690 -0.9 -1.5 hypothetical protein compare
BWI76_RS19935 -0.9 -1.7 hypothetical protein compare
BWI76_RS26620 -0.9 -1.0 Fe-S biogenesis protein NfuA compare
BWI76_RS01125 -0.9 -3.6 4-alpha-L-fucosyltransferase compare
BWI76_RS25905 -0.9 -2.4 hypothetical protein compare
BWI76_RS00600 -0.9 -4.1 LacI family transcriptional regulator compare
BWI76_RS01630 -0.9 -1.1 16S ribosomal RNA compare
BWI76_RS01110 -0.9 -1.5 TDP-fucosamine acetyltransferase compare
BWI76_RS15740 -0.8 -3.3 HNH endonuclease compare
BWI76_RS23015 -0.8 -1.6 cobalt transporter ATP-binding subunit compare
BWI76_RS12375 -0.8 -2.2 DNA-invertase hin compare
BWI76_RS22690 -0.8 -1.9 adenylyl-sulfate kinase compare
BWI76_RS04270 -0.8 -3.2 transaldolase compare
BWI76_RS04570 -0.8 -3.9 RNA polymerase-associated protein RapA compare
BWI76_RS12280 -0.8 -2.0 hypothetical protein compare
BWI76_RS08425 -0.8 -3.6 succinyl-CoA ligase subunit beta compare
BWI76_RS26405 -0.8 -1.5 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS08275 -0.8 -0.8 LexA regulated protein compare
BWI76_RS25355 -0.8 -5.0 cell division protein ZapE compare
BWI76_RS20360 -0.8 -1.0 cell division protein DedD compare
BWI76_RS06830 -0.8 -3.5 recombination protein RecR compare
BWI76_RS10035 -0.8 -1.0 hypothetical protein compare
BWI76_RS11635 -0.8 -1.5 ABC transporter compare
BWI76_RS27875 -0.8 -0.9 membrane protein compare
BWI76_RS27385 -0.8 -3.1 orotate phosphoribosyltransferase compare
BWI76_RS24275 -0.8 -1.8 biopolymer transport protein ExbD compare
BWI76_RS05010 -0.8 -1.7 tRNA glutamyl-Q synthetase compare
BWI76_RS11125 -0.8 -1.3 metal-dependent hydrolase compare
BWI76_RS23830 -0.8 -2.9 hypothetical protein compare
BWI76_RS15700 -0.8 -2.7 hypothetical protein compare
BWI76_RS16485 -0.7 -1.4 ribonuclease T compare
BWI76_RS20130 -0.7 -4.1 NADH-quinone oxidoreductase subunit N compare
BWI76_RS01385 -0.7 -1.6 potassium transporter compare
BWI76_RS08210 -0.7 -1.7 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS15640 -0.7 -3.7 hypothetical protein compare
BWI76_RS08980 -0.7 -1.1 DNA starvation/stationary phase protection protein compare
BWI76_RS26085 -0.7 -1.4 3-dehydroquinate synthase compare
BWI76_RS15830 -0.7 -2.6 hypothetical protein compare
BWI76_RS24605 -0.7 -4.0 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS10935 -0.7 -3.0 glucan biosynthesis glucosyltransferase H compare
BWI76_RS24595 -0.7 -3.3 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS04175 -0.7 -1.6 energy-dependent translational throttle protein EttA compare
BWI76_RS15290 -0.7 -1.2 transcriptional regulator compare
BWI76_RS12390 -0.7 -2.3 antibiotic biosynthesis monooxygenase compare
BWI76_RS12345 -0.7 -2.6 nitrite transporter compare
BWI76_RS27390 -0.7 -2.1 ribonuclease PH compare
BWI76_RS12405 -0.7 -3.7 diguanylate phosphodiesterase compare
BWI76_RS15685 -0.7 -1.9 hypothetical protein compare
BWI76_RS26410 -0.7 -1.6 membrane protein compare
BWI76_RS02255 -0.7 -1.8 chaperone-modulator protein CbpM compare
BWI76_RS26440 -0.7 -1.1 hypothetical protein compare
BWI76_RS17195 -0.7 -1.6 hypothetical protein compare
BWI76_RS20895 -0.7 -2.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS08390 -0.7 -2.1 hypothetical protein compare
BWI76_RS20750 -0.7 -1.0 carboxysome structural protein EutK compare
BWI76_RS00095 -0.7 -2.2 DNA-binding transcriptional regulator compare
BWI76_RS18565 -0.7 -1.9 pemk protein compare
BWI76_RS03415 -0.7 -3.5 LacI family transcriptional regulator compare
BWI76_RS15645 -0.7 -4.9 gp6 compare
BWI76_RS11170 -0.7 -1.1 hypothetical protein compare
BWI76_RS01615 -0.7 -3.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS12305 -0.7 -2.4 hypothetical protein compare
BWI76_RS01540 -0.7 -1.1 thiamine biosynthesis protein ThiS compare
BWI76_RS06535 -0.7 -3.4 endopeptidase La compare
BWI76_RS21070 -0.7 -1.3 outer membrane protein assembly factor BamB compare
BWI76_RS01325 -0.7 -1.2 twin-arginine translocase subunit TatB compare
BWI76_RS08430 -0.7 -3.4 succinate--CoA ligase subunit alpha compare
BWI76_RS12050 -0.7 -2.9 hypothetical protein compare
BWI76_RS16755 -0.7 -1.9 acetoin reductase compare
BWI76_RS12240 -0.7 -2.6 terminase small subunit compare
BWI76_RS20180 -0.7 -3.1 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS06495 -0.6 -4.0 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS15650 -0.6 -2.2 gp5 compare
BWI76_RS27860 -0.6 -3.2 D-serine dehydratase compare
BWI76_RS11685 -0.6 -3.4 Succinylarginine dihydrolase (EC 3.5.3.23) (from data) compare
BWI76_RS07070 -0.6 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS13505 -0.6 -2.8 putative receptor compare
BWI76_RS12180 -0.6 -3.3 membrane protein compare
BWI76_RS09555 -0.6 -2.2 pyruvate oxidase compare
BWI76_RS02825 -0.6 -1.9 putative acyltransferase domain protein compare
BWI76_RS13380 -0.6 -2.0 hypothetical protein compare
BWI76_RS23325 -0.6 -1.5 hypothetical protein compare
BWI76_RS06225 -0.6 -2.9 exonuclease sbcCD subunit D compare
BWI76_RS04160 -0.6 -3.4 phosphoserine phosphatase compare
BWI76_RS04645 -0.6 -2.2 3-dehydroquinase compare
BWI76_RS24850 -0.6 -2.5 DeoR family transcriptional regulator compare
BWI76_RS21450 -0.6 -1.5 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS02995 -0.6 -2.8 aspartate carbamoyltransferase compare
BWI76_RS10930 -0.6 -2.8 glucan biosynthesis protein G compare
BWI76_RS08530 -0.6 -1.9 protein TolA compare
BWI76_RS01885 -0.6 -1.0 CsbD family protein compare
BWI76_RS01350 -0.6 -0.7 NAD(P)H-flavin reductase compare
BWI76_RS24080 -0.6 -1.0 DUF179 domain-containing protein compare
BWI76_RS23885 -0.6 -1.2 2-octaprenylphenol hydroxylase compare
BWI76_RS12265 -0.6 -2.3 hypothetical protein compare
BWI76_RS09615 -0.6 -1.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS08520 -0.6 -1.5 colicin transporter TolQ compare
BWI76_RS14770 -0.6 -1.1 PTS IIA 2 domain protein compare
BWI76_RS15600 -0.6 -1.7 hypothetical protein compare
BWI76_RS27745 -0.6 -1.6 PTS sugar transporter subunit IIB compare
BWI76_RS24740 -0.6 -2.0 GntR family transcriptional regulator compare
BWI76_RS26180 -0.6 -2.8 rhomboid family intramembrane serine protease GlpG compare
BWI76_RS25480 -0.6 -1.6 ribonuclease E/G compare
BWI76_RS27430 -0.6 -0.7 (p)ppGpp synthetase compare
BWI76_RS08380 -0.6 -0.9 endonuclease VIII compare
BWI76_RS14715 -0.6 -2.5 type I methionyl aminopeptidase compare
BWI76_RS19010 -0.6 -1.4 polysaccharide pyruvyl transferase yvff compare
BWI76_RS08350 -0.6 -1.9 carboxylase compare
BWI76_RS02180 -0.6 -1.0 hypothetical protein compare
BWI76_RS02810 -0.6 -2.2 sugar ABC transporter permease YjfF compare
BWI76_RS09030 -0.6 -2.3 transpeptidase compare
BWI76_RS12330 -0.6 -1.0 hypothetical protein compare
BWI76_RS08665 -0.6 -2.6 6-phosphogluconolactonase compare
BWI76_RS14775 -0.6 -1.6 creatinine amidohydrolase compare
BWI76_RS12300 -0.6 -3.4 hypothetical protein compare
BWI76_RS00225 -0.6 -2.7 16S rRNA methyltransferase G compare
BWI76_RS12335 -0.6 -3.2 hypothetical protein compare
BWI76_RS10625 -0.6 -3.6 hypothetical protein compare
BWI76_RS19195 -0.6 -1.9 nickel ABC transporter permease compare
BWI76_RS09870 -0.6 -3.5 aromatic amino acid aminotransferase compare
BWI76_RS18360 -0.6 -1.2 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS16075 -0.6 -1.1 oxidoreductase compare
BWI76_RS17750 -0.6 -2.2 Na+/H+ antiporter NhaB compare
BWI76_RS17780 -0.6 -2.1 septum formation inhibitor compare
BWI76_RS12350 -0.6 -3.2 kinase compare
BWI76_RS01135 -0.6 -2.6 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS23970 -0.6 -1.7 mechanosensitive ion channel protein MscS compare
BWI76_RS26460 -0.6 -2.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS12225 -0.6 -2.1 hypothetical protein compare
BWI76_RS13775 -0.6 -1.6 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS18385 -0.6 -0.8 hypothetical protein compare
BWI76_RS21165 -0.6 -1.0 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS24600 -0.6 -2.7 dihydroxyacetone kinase compare
BWI76_RS20350 -0.6 -3.0 amidophosphoribosyltransferase compare
BWI76_RS01940 -0.6 -1.7 hypothetical protein compare
BWI76_RS03605 -0.6 -1.6 BMC domain-containing protein compare
BWI76_RS20715 -0.6 -1.4 RpoE-regulated lipoprotein compare
BWI76_RS09960 -0.6 -1.7 Lon protease compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms