Experiment set10IT063 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS23240 -4.6 -4.5 exonuclease V subunit gamma compare
BWI76_RS09660 -3.5 -4.1 DNA translocase FtsK compare
BWI76_RS15115 -3.5 -9.9 MFS transporter compare
BWI76_RS02530 -3.3 -3.1 tRNA dimethylallyltransferase compare
BWI76_RS01210 -3.2 -6.9 tyrosine recombinase XerC compare
BWI76_RS09970 -3.2 -5.6 porin OmpA compare
BWI76_RS04510 -3.0 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS11430 -2.9 -2.0 lipoprotein compare
BWI76_RS23230 -2.9 -4.7 exodeoxyribonuclease V subunit beta compare
BWI76_RS02410 -2.5 -2.9 EF-P beta-lysylation protein EpmB compare
BWI76_RS08525 -2.5 -3.5 colicin transporter compare
BWI76_RS15110 -2.3 -13.8 putative excinuclease ABC subunit A compare
BWI76_RS05200 -2.2 -3.2 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS09190 -2.0 -6.2 hypothetical protein compare
BWI76_RS15660 -2.0 -2.3 hypothetical protein compare
BWI76_RS10575 -2.0 -2.5 polar amino acid ABC transporter permease compare
BWI76_RS16965 -2.0 -3.2 murein lipoprotein compare
BWI76_RS07070 -1.9 -5.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS21070 -1.8 -3.1 outer membrane protein assembly factor BamB compare
BWI76_RS00025 -1.8 -1.5 hypothetical protein compare
BWI76_RS08530 -1.8 -4.1 protein TolA compare
BWI76_RS02995 -1.8 -8.2 aspartate carbamoyltransferase compare
BWI76_RS26085 -1.8 -2.4 3-dehydroquinate synthase compare
BWI76_RS20965 -1.8 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS25335 -1.8 -4.9 stringent starvation protein A compare
BWI76_RS09910 -1.8 -12.9 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS20895 -1.7 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS20650 -1.7 -1.9 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS25600 -1.7 -1.4 tRNA-Thr compare
BWI76_RS15825 -1.7 -3.5 hypothetical protein compare
BWI76_RS01615 -1.6 -9.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS15835 -1.6 -1.3 hypothetical protein compare
BWI76_RS09645 -1.5 -2.3 thioredoxin-disulfide reductase compare
BWI76_RS26075 -1.5 -4.2 DNA adenine methylase compare
BWI76_RS27390 -1.5 -5.9 ribonuclease PH compare
BWI76_RS25070 -1.5 -1.7 hypothetical protein compare
BWI76_RS21580 -1.5 -2.5 SsrA-binding protein compare
BWI76_RS00345 -1.5 -3.7 protein disulfide oxidoreductase DsbA compare
BWI76_RS21140 -1.4 -2.1 molecular chaperone HscA compare
BWI76_RS17805 -1.4 -1.7 membrane protein compare
BWI76_RS10990 -1.4 -3.5 dihydroorotase compare
BWI76_RS04530 -1.3 -1.9 peptidylprolyl isomerase SurA compare
BWI76_RS07730 -1.3 -1.7 iron-enterobactin transporter membrane protein compare
BWI76_RS00400 -1.3 -1.4 glutamine synthetase compare
BWI76_RS21265 -1.3 -9.1 phosphoribosylformylglycinamidine synthase compare
BWI76_RS07065 -1.3 -5.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS08535 -1.3 -2.6 translocation protein TolB compare
BWI76_RS11965 -1.3 -4.8 orotidine-5'-phosphate decarboxylase compare
BWI76_RS13560 -1.3 -1.5 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS09755 -1.2 -5.4 phosphoserine transaminase compare
BWI76_RS27385 -1.2 -4.9 orotate phosphoribosyltransferase compare
BWI76_RS00355 -1.2 -3.7 DNA polymerase I compare
BWI76_RS07595 -1.2 -2.5 putative oxidoreductase compare
BWI76_RS21340 -1.2 -2.4 SoxR reducing system protein RseC compare
BWI76_RS26775 -1.2 -4.2 endo-1,4-D-glucanase compare
BWI76_RS05450 -1.2 -1.7 ribonuclease HI compare
BWI76_RS20380 -1.2 -1.2 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS01630 -1.2 -1.4 16S ribosomal RNA compare
BWI76_RS21690 -1.2 -1.7 hypothetical protein compare
BWI76_RS08980 -1.2 -1.6 DNA starvation/stationary phase protection protein compare
BWI76_RS17860 -1.2 -2.4 YoaH family protein compare
BWI76_RS20355 -1.2 -2.9 colicin V production protein compare
BWI76_RS04465 -1.2 -3.6 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04160 -1.2 -4.0 phosphoserine phosphatase compare
BWI76_RS19935 -1.1 -2.1 hypothetical protein compare
BWI76_RS04470 -1.1 -6.8 carbamoyl phosphate synthase large subunit compare
BWI76_RS16485 -1.1 -1.9 ribonuclease T compare
BWI76_RS21370 -1.1 -1.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS01610 -1.1 -5.1 phosphoribosylamine--glycine ligase compare
BWI76_RS11810 -1.1 -2.4 outer membrane protein OmpW compare
BWI76_RS27915 -1.1 -2.5 YceK/YidQ family lipoprotein compare
BWI76_RS21450 -1.1 -2.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS21395 -1.0 -2.1 DTW domain-containing protein compare
BWI76_RS07985 -1.0 -1.2 fluoride ion transporter CrcB compare
BWI76_RS20435 -1.0 -1.7 chorismate synthase compare
BWI76_RS17720 -1.0 -1.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS08520 -1.0 -2.0 colicin transporter TolQ compare
BWI76_RS26440 -1.0 -1.5 hypothetical protein compare
BWI76_RS02855 -1.0 -1.7 cytochrome B562 compare
BWI76_RS06535 -1.0 -4.5 endopeptidase La compare
BWI76_RS01200 -1.0 -1.9 diaminopimelate epimerase compare
BWI76_RS08650 -1.0 -2.5 molybdate ABC transporter permease compare
BWI76_RS23820 -1.0 -2.1 flavodoxin FldB compare
BWI76_RS12790 -1.0 -1.6 lactate dehydrogenase compare
BWI76_RS23970 -1.0 -2.6 mechanosensitive ion channel protein MscS compare
BWI76_RS11520 -0.9 -1.3 hypothetical protein compare
BWI76_RS20350 -0.9 -3.8 amidophosphoribosyltransferase compare
BWI76_RS01115 -0.9 -2.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS25480 -0.9 -2.8 ribonuclease E/G compare
BWI76_RS06075 -0.9 -2.0 taurine transporter subunit compare
BWI76_RS19035 -0.9 -4.3 dTDP-rhamnosyl transferase compare
BWI76_RS10935 -0.9 -4.1 glucan biosynthesis glucosyltransferase H compare
BWI76_RS06120 -0.9 -2.3 membrane protein compare
BWI76_RS10930 -0.9 -3.9 glucan biosynthesis protein G compare
BWI76_RS07645 -0.9 -1.8 short-chain dehydrogenase/reductase compare
BWI76_RS01220 -0.9 -4.4 DNA-dependent helicase II compare
BWI76_RS25065 -0.9 -2.1 polyribonucleotide nucleotidyltransferase compare
BWI76_RS24585 -0.9 -2.0 glycerol dehydrogenase compare
BWI76_RS01870 -0.8 -3.0 diacylglycerol kinase compare
BWI76_RS14770 -0.8 -1.4 PTS IIA 2 domain protein compare
BWI76_RS00240 -0.8 -1.5 FMN-binding protein MioC compare
BWI76_RS20490 -0.8 -2.6 hypothetical protein compare
BWI76_RS03190 -0.8 -2.5 hypothetical protein compare
BWI76_RS15670 -0.8 -3.3 hypothetical protein compare
BWI76_RS24400 -0.8 -3.6 outer membrane channel protein TolC compare
BWI76_RS26570 -0.8 -1.6 anion permease compare
BWI76_RS07970 -0.8 -1.8 hypothetical protein compare
BWI76_RS25960 -0.8 -2.5 NUDIX hydrolase compare
BWI76_RS15655 -0.8 -3.6 hypothetical protein compare
BWI76_RS01385 -0.8 -1.3 potassium transporter compare
BWI76_RS08375 -0.8 -1.5 pyroglutamyl-peptidase I compare
BWI76_RS19010 -0.8 -2.2 polysaccharide pyruvyl transferase yvff compare
BWI76_RS12375 -0.8 -2.4 DNA-invertase hin compare
BWI76_RS14390 -0.8 -1.8 hypothetical protein compare
BWI76_RS15830 -0.8 -2.5 hypothetical protein compare
BWI76_RS11580 -0.8 -1.6 L-asparaginase 1 compare
BWI76_RS23920 -0.8 -3.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS08500 -0.8 -2.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS20155 -0.8 -1.2 NADH-quinone oxidoreductase subunit I compare
BWI76_RS06680 -0.8 -1.0 hypothetical protein compare
BWI76_RS04645 -0.8 -2.5 3-dehydroquinase compare
BWI76_RS02255 -0.8 -2.4 chaperone-modulator protein CbpM compare
BWI76_RS15840 -0.8 -2.4 prophage protein compare
BWI76_RS20440 -0.8 -1.3 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS27820 -0.8 -1.4 ilvB operon leader peptide IvbL compare
BWI76_RS01125 -0.8 -2.8 4-alpha-L-fucosyltransferase compare
BWI76_RS06295 -0.8 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS14650 -0.7 -2.9 helix-turn-helix transcriptional regulator compare
BWI76_RS19215 -0.7 -1.6 proline-specific peptidase compare
BWI76_RS15645 -0.7 -4.0 gp6 compare
BWI76_RS19375 -0.7 -1.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS00505 -0.7 -1.9 PTS system, sorbose-specific IIB component compare
BWI76_RS11980 -0.7 -1.4 DeoR family transcriptional regulator compare
BWI76_RS04715 -0.7 -1.0 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS15650 -0.7 -2.7 gp5 compare
BWI76_RS26405 -0.7 -1.2 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS13595 -0.7 -3.6 transcriptional regulator compare
BWI76_RS09030 -0.7 -3.1 transpeptidase compare
BWI76_RS10625 -0.7 -4.4 hypothetical protein compare
BWI76_RS22475 -0.7 -1.5 heme ABC transporter ATP-binding protein compare
BWI76_RS26175 -0.7 -1.8 DeoR/GlpR family transcriptional regulator compare
BWI76_RS01135 -0.7 -3.1 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS15700 -0.7 -3.4 hypothetical protein compare
BWI76_RS06525 -0.7 -3.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS03880 -0.7 -2.4 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS08495 -0.7 -3.5 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS20245 -0.7 -2.1 transketolase subunit B compare
BWI76_RS23755 -0.7 -2.9 transcriptional regulator compare
BWI76_RS22755 -0.7 -3.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS18110 -0.7 -2.7 transcriptional regulator HexR compare
BWI76_RS19195 -0.7 -2.1 nickel ABC transporter permease compare
BWI76_RS24600 -0.7 -1.8 dihydroxyacetone kinase compare
BWI76_RS06730 -0.7 -1.0 lac repressor compare
BWI76_RS15600 -0.7 -1.8 hypothetical protein compare
BWI76_RS05970 -0.7 -1.7 hypothetical protein compare
BWI76_RS01080 -0.7 -4.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS07255 -0.7 -1.9 hypothetical protein compare
BWI76_RS23320 -0.7 -1.2 hypothetical protein compare
BWI76_RS14245 -0.7 -2.0 carboxymuconolactone decarboxylase family protein compare
BWI76_RS13320 -0.7 -1.8 putative LpxA-like enzyme compare
BWI76_RS17300 -0.7 -1.1 tRNA-Tyr compare
BWI76_RS15200 -0.7 -2.9 glutaminase compare
BWI76_RS08315 -0.6 -1.9 K+-transporting ATPase subunit B compare
BWI76_RS22960 -0.6 -1.3 YgdI/YgdR family lipoprotein compare
BWI76_RS15705 -0.6 -2.8 putative holin protein compare
BWI76_RS27225 -0.6 -2.2 rhodanese-like domain-containing protein compare
BWI76_RS00140 -0.6 -0.7 phosphate transport system regulator PhoU compare
BWI76_RS15635 -0.6 -1.9 hypothetical protein compare
BWI76_RS27430 -0.6 -0.9 (p)ppGpp synthetase compare
BWI76_RS06545 -0.6 -1.7 peptidylprolyl isomerase compare
BWI76_RS25205 -0.6 -1.7 hypothetical protein compare
BWI76_RS03045 -0.6 -0.9 hypothetical protein compare
BWI76_RS25920 -0.6 -1.1 peptidylprolyl isomerase compare
BWI76_RS14755 -0.6 -1.9 SIS domain-containing protein compare
BWI76_RS15765 -0.6 -1.5 hypothetical protein compare
BWI76_RS15690 -0.6 -2.2 hypothetical protein compare
BWI76_RS20050 -0.6 -1.1 hypothetical protein compare
BWI76_RS27505 -0.6 -1.9 septal ring assembly protein ZapB compare
BWI76_RS16525 -0.6 -2.3 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS01085 -0.6 -3.3 polysaccharide chain length modulation protein compare
BWI76_RS26620 -0.6 -0.7 Fe-S biogenesis protein NfuA compare
BWI76_RS25270 -0.6 -1.3 ribosome hibernation promoting factor compare
BWI76_RS27745 -0.6 -1.5 PTS sugar transporter subunit IIB compare
BWI76_RS21685 -0.6 -1.1 hypothetical protein compare
BWI76_RS06595 -0.6 -1.3 hypothetical protein compare
BWI76_RS09760 -0.6 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS02695 -0.6 -1.7 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS14150 -0.6 -1.9 dihydrolipoyllysine-residue acetyltransferase compare
BWI76_RS15640 -0.6 -3.2 hypothetical protein compare
BWI76_RS22760 -0.6 -3.7 sulfite reductase subunit beta compare
BWI76_RS16445 -0.6 -1.2 auxiliary transporter membrane fusion protein compare
BWI76_RS23915 -0.6 -1.7 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS22205 -0.6 -1.8 cation ABC transporter ATP-binding protein compare
BWI76_RS11125 -0.6 -1.1 metal-dependent hydrolase compare
BWI76_RS13730 -0.6 -1.4 hypothetical protein compare
BWI76_RS26080 -0.6 -2.9 cell division protein DamX compare
BWI76_RS25280 -0.6 -1.2 RNase adaptor protein RapZ compare
BWI76_RS08120 -0.6 -2.1 cobalt transporter compare
BWI76_RS08040 -0.6 -1.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS10730 -0.6 -1.0 bifunctional glucose-1-phosphatase/inositol phosphatase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms