Experiment set10IT060 for Bifidobacterium breve UCC2003
diet=StandardDiet; sample=FecalPellet; mouse4; day5
Group: mouseMedia: + diet=StandardDiet; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 9/1/2020
Specific Phenotypes
For 5 genes in this experiment
For mouse diet=StandardDiet; sample=FecalPellet in Bifidobacterium breve UCC2003
For mouse diet=StandardDiet; sample=FecalPellet across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Galactosylceramide and Sulfatide metabolism | 1 |
| Lactose and Galactose Uptake and Utilization | 1 |
| Lactose utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Galactose metabolism
- Other glycan degradation
- Glycosaminoglycan degradation
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| lactose degradation III | 1 | 1 | 1 |
| xyloglucan degradation II (exoglucanase) | 8 | 3 | 3 |