Experiment set10IT059 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS01210 -6.7 -5.7 tyrosine recombinase XerC compare
BWI76_RS21475 -6.2 -7.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18940 -5.9 -7.0 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS04465 -5.6 -5.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS26085 -5.6 -3.8 3-dehydroquinate synthase compare
BWI76_RS23360 -5.3 -5.2 diaminopimelate decarboxylase compare
BWI76_RS11965 -5.2 -5.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS00805 -5.2 -4.0 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS09660 -5.1 -3.5 DNA translocase FtsK compare
BWI76_RS04470 -5.0 -10.1 carbamoyl phosphate synthase large subunit compare
BWI76_RS09760 -4.9 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04645 -4.8 -7.2 3-dehydroquinase compare
BWI76_RS20350 -4.7 -9.5 amidophosphoribosyltransferase compare
BWI76_RS24400 -4.7 -6.4 outer membrane channel protein TolC compare
BWI76_RS18950 -4.7 -5.1 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS23240 -4.6 -4.5 exonuclease V subunit gamma compare
BWI76_RS18920 -4.6 -5.2 ATP phosphoribosyltransferase compare
BWI76_RS05835 -4.6 -4.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS09635 -4.5 -3.1 amino acid ABC transporter ATP-binding protein compare
BWI76_RS01615 -4.4 -11.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS18935 -4.4 -10.0 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS23230 -4.4 -3.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS18140 -4.3 -5.7 zinc ABC transporter permease compare
BWI76_RS23920 -4.3 -4.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS20355 -4.2 -5.3 colicin V production protein compare
BWI76_RS00845 -4.2 -9.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS23365 -4.1 -8.3 LysR family transcriptional regulator compare
BWI76_RS25230 -4.1 -6.4 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS07070 -4.1 -6.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS05840 -4.0 -7.6 glutamate 5-kinase compare
BWI76_RS04160 -4.0 -6.7 phosphoserine phosphatase compare
BWI76_RS09755 -3.9 -9.9 phosphoserine transaminase compare
BWI76_RS18925 -3.9 -9.0 histidinol dehydrogenase compare
BWI76_RS25225 -3.9 -9.6 ABC transporter permease compare
BWI76_RS04255 -3.9 -11.5 threonine synthase compare
BWI76_RS18930 -3.8 -4.6 histidinol-phosphate transaminase compare
BWI76_RS00855 -3.8 -9.0 argininosuccinate lyase compare
BWI76_RS21265 -3.7 -14.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS08385 -3.7 -5.6 citrate (Si)-synthase compare
BWI76_RS04250 -3.7 -10.0 homoserine kinase compare
BWI76_RS00850 -3.7 -9.6 acetylglutamate kinase compare
BWI76_RS25115 -3.7 -9.9 argininosuccinate synthase compare
BWI76_RS00975 -3.6 -12.4 dihydroxy-acid dehydratase compare
BWI76_RS02995 -3.6 -6.5 aspartate carbamoyltransferase compare
BWI76_RS18130 -3.6 -4.2 zinc ABC transporter substrate-binding protein compare
BWI76_RS00835 -3.5 -15.7 phosphoenolpyruvate carboxylase compare
BWI76_RS00990 -3.5 -10.6 ketol-acid reductoisomerase compare
BWI76_RS23220 -3.4 -9.1 amino-acid N-acetyltransferase compare
BWI76_RS20435 -3.4 -2.2 chorismate synthase compare
BWI76_RS24285 -3.3 -8.7 cystathionine beta-lyase compare
BWI76_RS10990 -3.3 -4.4 dihydroorotase compare
BWI76_RS07065 -3.3 -9.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00980 -3.2 -12.2 PLP-dependent threonine dehydratase compare
BWI76_RS09970 -3.2 -9.7 porin OmpA compare
BWI76_RS03010 -3.2 -8.9 ornithine carbamoyltransferase compare
BWI76_RS04670 -3.2 -11.4 3-isopropylmalate dehydratase large subunit compare
BWI76_RS09645 -3.2 -3.2 thioredoxin-disulfide reductase compare
BWI76_RS00400 -3.2 -2.2 glutamine synthetase compare
BWI76_RS25215 -3.2 -7.1 phospholipid-binding protein MlaC compare
BWI76_RS18135 -3.2 -7.7 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS20965 -3.1 -5.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS01655 -3.1 -9.8 homoserine O-succinyltransferase compare
BWI76_RS21070 -3.1 -3.1 outer membrane protein assembly factor BamB compare
BWI76_RS09910 -3.1 -16.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS20895 -3.1 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04675 -3.1 -6.6 3-isopropylmalate dehydrogenase compare
BWI76_RS11850 -3.1 -12.9 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS04245 -3.0 -14.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS01610 -3.0 -8.6 phosphoribosylamine--glycine ligase compare
BWI76_RS25335 -3.0 -4.0 stringent starvation protein A compare
BWI76_RS18955 -3.0 -3.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04665 -3.0 -20.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS09640 -2.9 -5.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS04240 -2.8 -3.5 thr operon leader peptide compare
BWI76_RS27385 -2.8 -6.6 orotate phosphoribosyltransferase compare
BWI76_RS04680 -2.8 -13.6 2-isopropylmalate synthase compare
BWI76_RS05015 -2.8 -4.3 transcriptional regulator compare
BWI76_RS25645 -2.8 -7.4 shikimate dehydrogenase compare
BWI76_RS27390 -2.7 -5.6 ribonuclease PH compare
BWI76_RS00965 -2.7 -1.9 acetolactate synthase 2 small subunit compare
BWI76_RS26000 -2.7 -8.8 aspartate aminotransferase family protein compare
BWI76_RS21370 -2.6 -2.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS11855 -2.6 -9.7 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS11860 -2.5 -7.6 anthranilate synthase component I compare
BWI76_RS11840 -2.5 -5.5 tryptophan synthase subunit alpha compare
BWI76_RS15825 -2.5 -3.2 hypothetical protein compare
BWI76_RS20475 -2.5 -5.2 phospholipid-binding lipoprotein MlaA compare
BWI76_RS02735 -2.5 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS08495 -2.5 -8.4 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS00785 -2.5 -7.3 cystathionine gamma-synthase compare
BWI76_RS11845 -2.4 -4.9 tryptophan synthase subunit beta compare
BWI76_RS25600 -2.4 -1.7 tRNA-Thr compare
BWI76_RS04530 -2.4 -2.2 peptidylprolyl isomerase SurA compare
BWI76_RS27310 -2.3 -9.3 glycosyltransferase compare
BWI76_RS22755 -2.3 -7.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS04685 -2.3 -8.7 putative leucine operon leader peptide compare
BWI76_RS06775 -2.2 -13.6 multidrug efflux RND transporter permease subunit compare
BWI76_RS00345 -2.2 -4.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS21465 -2.2 -6.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS01325 -2.2 -3.6 twin-arginine translocase subunit TatB compare
BWI76_RS21480 -2.2 -6.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS20650 -2.2 -1.5 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS04510 -2.1 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS26200 -2.1 -6.4 starch synthase compare
BWI76_RS15835 -2.1 -1.8 hypothetical protein compare
BWI76_RS20155 -2.1 -2.3 NADH-quinone oxidoreductase subunit I compare
BWI76_RS23265 -2.0 -4.2 hypothetical protein compare
BWI76_RS22690 -2.0 -3.7 adenylyl-sulfate kinase compare
BWI76_RS25960 -2.0 -5.5 NUDIX hydrolase compare
BWI76_RS19845 -1.9 -4.3 phosphatase compare
BWI76_RS09190 -1.9 -6.4 hypothetical protein compare
BWI76_RS17195 -1.9 -3.4 hypothetical protein compare
BWI76_RS15115 -1.9 -8.5 MFS transporter compare
BWI76_RS06780 -1.9 -5.8 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS02530 -1.8 -2.9 tRNA dimethylallyltransferase compare
BWI76_RS22805 -1.8 -8.8 GTP diphosphokinase compare
BWI76_RS22760 -1.8 -9.8 sulfite reductase subunit beta compare
BWI76_RS08530 -1.8 -3.7 protein TolA compare
BWI76_RS11275 -1.7 -7.6 sensor protein PhoQ compare
BWI76_RS25220 -1.7 -2.9 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS01330 -1.7 -3.9 twin-arginine translocase subunit TatC compare
BWI76_RS08500 -1.7 -3.4 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS17975 -1.7 -4.7 tail-specific protease compare
BWI76_RS26460 -1.6 -5.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS21580 -1.6 -1.7 SsrA-binding protein compare
BWI76_RS00960 -1.6 -5.3 acetolactate synthase 2 catalytic subunit compare
BWI76_RS05260 -1.6 -2.2 chaperone compare
BWI76_RS24885 -1.6 -2.5 PTS galactitol transporter subunit IIB compare
BWI76_RS19805 -1.6 -3.5 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS26570 -1.6 -3.0 anion permease compare
BWI76_RS08525 -1.6 -3.0 colicin transporter compare
BWI76_RS20160 -1.6 -3.8 NADH-quinone oxidoreductase subunit H compare
BWI76_RS08425 -1.5 -3.7 succinyl-CoA ligase subunit beta compare
BWI76_RS00985 -1.5 -6.2 transcriptional regulator IlvY compare
BWI76_RS17980 -1.5 -4.7 RNA chaperone ProQ compare
BWI76_RS20130 -1.5 -6.8 NADH-quinone oxidoreductase subunit N compare
BWI76_RS21450 -1.5 -2.9 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS08535 -1.4 -2.8 translocation protein TolB compare
BWI76_RS16965 -1.4 -1.6 murein lipoprotein compare
BWI76_RS16215 -1.4 -4.4 hypothetical protein compare
BWI76_RS00025 -1.4 -1.3 hypothetical protein compare
BWI76_RS15830 -1.4 -3.3 hypothetical protein compare
BWI76_RS25065 -1.4 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS20180 -1.4 -5.0 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS00440 -1.4 -1.9 CopG family transcriptional regulator compare
BWI76_RS22765 -1.3 -8.2 sulfite reductase subunit alpha compare
BWI76_RS17720 -1.3 -1.7 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS15810 -1.3 -5.2 hypothetical protein compare
BWI76_RS27290 -1.3 -7.5 hypothetical protein compare
BWI76_RS20135 -1.3 -5.3 NADH-quinone oxidoreductase subunit M compare
BWI76_RS19010 -1.3 -3.2 polysaccharide pyruvyl transferase yvff compare
BWI76_RS01090 -1.3 -5.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS00180 -1.3 -1.9 F0F1 ATP synthase subunit epsilon compare
BWI76_RS20170 -1.3 -2.9 NADH-quinone oxidoreductase subunit F compare
BWI76_RS21350 -1.3 -1.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS11980 -1.3 -2.6 DeoR family transcriptional regulator compare
BWI76_RS12090 -1.3 -1.5 HNH endonuclease compare
BWI76_RS26455 -1.3 -2.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS27165 -1.2 -4.4 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS20970 -1.2 -1.7 phosphoribosylglycinamide formyltransferase compare
BWI76_RS04100 -1.2 -3.1 peptide chain release factor 3 compare
BWI76_RS26405 -1.2 -2.0 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS08395 -1.2 -2.4 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS23885 -1.2 -2.0 2-octaprenylphenol hydroxylase compare
BWI76_RS06535 -1.2 -4.8 endopeptidase La compare
BWI76_RS15660 -1.2 -1.8 hypothetical protein compare
BWI76_RS01800 -1.2 -3.1 glucose-6-phosphate isomerase compare
BWI76_RS01200 -1.2 -2.2 diaminopimelate epimerase compare
BWI76_RS19685 -1.1 -4.2 lysine transporter compare
BWI76_RS26665 -1.1 -2.3 DNA-binding response regulator compare
BWI76_RS18385 -1.1 -1.5 hypothetical protein compare
BWI76_RS25425 -1.1 -1.6 arginine repressor compare
BWI76_RS25070 -1.1 -1.5 hypothetical protein compare
BWI76_RS06830 -1.1 -4.4 recombination protein RecR compare
BWI76_RS07740 -1.1 -1.9 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS20150 -1.1 -2.2 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS27820 -1.1 -1.9 ilvB operon leader peptide IvbL compare
BWI76_RS11335 -1.1 -1.5 tautomerase compare
BWI76_RS19035 -1.1 -5.5 dTDP-rhamnosyl transferase compare
BWI76_RS10470 -1.1 -4.0 iron ABC transporter substrate-binding protein compare
BWI76_RS15110 -1.0 -8.0 putative excinuclease ABC subunit A compare
BWI76_RS12070 -1.0 -1.5 hypothetical protein compare
BWI76_RS01275 -1.0 -5.3 LysR family transcriptional regulator compare
BWI76_RS01080 -1.0 -5.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS02410 -1.0 -1.8 EF-P beta-lysylation protein EpmB compare
BWI76_RS04715 -1.0 -2.2 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS23480 -1.0 -6.6 EAL domain-containing protein compare
BWI76_RS15635 -1.0 -3.9 hypothetical protein compare
BWI76_RS12295 -1.0 -3.2 hypothetical protein compare
BWI76_RS15840 -1.0 -3.3 prophage protein compare
BWI76_RS21565 -1.0 -1.4 outer membrane protein assembly factor BamE compare
BWI76_RS17200 -1.0 -1.8 hypothetical protein compare
BWI76_RS00875 -1.0 -3.3 DNA-binding transcriptional regulator FabR compare
BWI76_RS15640 -1.0 -4.6 hypothetical protein compare
BWI76_RS09655 -1.0 -3.3 leucine-responsive regulatory protein compare
BWI76_RS20440 -1.0 -1.7 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS00940 -1.0 -5.2 transcriptional regulator HdfR compare
BWI76_RS15435 -1.0 -1.8 hypothetical protein compare
BWI76_RS06325 -1.0 -2.6 hypothetical protein compare
BWI76_RS11515 -1.0 -1.8 peptide-methionine (R)-S-oxide reductase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms