Experiment set10IT058 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS22090 +3.2 12.2 transcriptional regulator compare
BWI76_RS20995 +3.2 20.4 RNA degradosome polyphosphate kinase compare
BWI76_RS22120 +2.6 20.6 glutamate--cysteine ligase compare
BWI76_RS24075 +2.5 14.5 glutathione synthase compare
BWI76_RS07465 +2.4 7.8 TetR family transcriptional regulator compare
BWI76_RS26685 +2.4 11.9 glutathione-disulfide reductase compare
BWI76_RS27675 +2.2 15.7 EmrB/QacA family drug resistance transporter compare
BWI76_RS00140 +2.2 4.2 phosphate transport system regulator PhoU compare
BWI76_RS01070 +2.1 11.7 thiol reductase thioredoxin compare
BWI76_RS20640 +1.9 11.4 cysteine synthase A compare
BWI76_RS17915 +1.8 6.9 membrane protein compare
BWI76_RS26095 +1.8 4.0 shikimate kinase compare
BWI76_RS22240 +1.6 13.1 transcriptional regulator compare
BWI76_RS17910 +1.6 8.1 hypothetical protein compare
BWI76_RS06785 +1.5 8.1 DNA-binding transcriptional repressor AcrR compare
BWI76_RS10305 +1.4 6.6 transposase compare
BWI76_RS17080 +1.4 9.0 hypothetical protein compare
BWI76_RS21075 +1.4 1.4 membrane protein compare
BWI76_RS05005 +1.3 5.0 polynucleotide adenylyltransferase compare
BWI76_RS01385 +1.3 3.0 potassium transporter compare
BWI76_RS04525 +1.1 1.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS24480 +1.1 7.6 undecaprenyl-diphosphatase compare
BWI76_RS24810 +1.1 1.9 hypothetical protein compare
BWI76_RS22085 +1.1 4.2 L-valine transporter subunit YgaH compare
BWI76_RS01890 +1.1 3.9 transcriptional regulator Zur compare
BWI76_RS24180 +1.1 2.9 hypothetical protein compare
BWI76_RS11285 +1.1 2.1 transcriptional regulator compare
BWI76_RS25280 +1.0 2.9 RNase adaptor protein RapZ compare
BWI76_RS16360 +1.0 2.0 electron transport complex subunit RsxB compare
BWI76_RS21570 +1.0 2.5 RnfH family protein compare
BWI76_RS18870 +1.0 1.7 protein NifZ compare
BWI76_RS15940 +1.0 2.0 DMSO reductase maturation protein DsmD compare
BWI76_RS04850 +0.9 4.7 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS10530 +0.9 2.9 GntR family transcriptional regulator with compare
BWI76_RS13240 +0.9 1.6 hypothetical protein compare
BWI76_RS05880 +0.9 1.5 AraC-type DNA-binding domain-containing protein compare
BWI76_RS11900 +0.9 1.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS07510 +0.9 3.2 hypothetical protein compare
BWI76_RS04705 +0.9 3.9 DNA-binding transcriptional regulator FruR compare
BWI76_RS09615 +0.9 1.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS01565 +0.9 1.9 NADH pyrophosphatase compare
BWI76_RS08750 +0.8 1.6 kinase inhibitor compare
BWI76_RS09110 +0.8 2.7 glutathione ABC transporter permease GsiD compare
BWI76_RS13895 +0.8 2.4 LysR family transcriptional regulator compare
BWI76_RS16375 +0.8 2.7 electron transport complex subunit G compare
BWI76_RS11435 +0.8 1.3 hypothetical protein compare
BWI76_RS12040 +0.8 1.8 hypothetical protein compare
BWI76_RS08945 +0.8 4.4 catecholate siderophore receptor Fiu compare
BWI76_RS14075 +0.8 2.0 TetR family transcriptional regulator compare
BWI76_RS07640 +0.8 1.6 short chain dehydrogenase compare
BWI76_RS25285 +0.8 1.0 HPr family phosphocarrier protein compare
BWI76_RS22685 +0.8 4.7 hypothetical protein compare
BWI76_RS09530 +0.8 1.0 hypothetical protein compare
BWI76_RS07590 +0.8 3.4 glutamate ABC transporter ATP-binding protein compare
BWI76_RS21165 +0.8 1.8 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS20880 +0.8 1.5 esterase compare
BWI76_RS12670 +0.8 2.2 DNA polymerase V subunit UmuD compare
BWI76_RS13970 +0.8 1.9 ABC transporter compare
BWI76_RS19495 +0.8 1.3 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS11405 +0.8 4.7 lipid A biosynthesis acyltransferase compare
BWI76_RS09730 +0.8 1.4 pyruvate formate lyase 1-activating protein compare
BWI76_RS06885 +0.8 1.3 TonB family protein compare
BWI76_RS07710 +0.7 3.4 invasin-like protein compare
BWI76_RS14735 +0.7 3.1 type 11 methyltransferase compare
BWI76_RS21235 +0.7 1.1 hypothetical protein compare
BWI76_RS14065 +0.7 1.3 hypothetical protein compare
BWI76_RS14980 +0.7 1.6 hypothetical protein compare
BWI76_RS18055 +0.7 2.8 copper resistance protein D compare
BWI76_RS09095 +0.7 5.2 glutathione ABC transporter ATP-binding protein GsiA compare
BWI76_RS23120 +0.7 1.9 propanediol dehydratase medium subunit compare
BWI76_RS21565 +0.7 1.4 outer membrane protein assembly factor BamE compare
BWI76_RS22815 +0.7 5.0 hybrid sensor histidine kinase/response regulator compare
BWI76_RS23300 +0.7 4.5 YgdI/YgdR family lipoprotein compare
BWI76_RS26185 +0.7 2.9 thiosulfate sulfurtransferase compare
BWI76_RS23965 +0.7 2.0 arginine exporter protein compare
BWI76_RS21285 +0.7 1.7 HAD family hydrolase compare
BWI76_RS20085 +0.7 2.4 GNAT family N-acetyltransferase compare
BWI76_RS13195 +0.7 1.9 glutamate dehydrogenase compare
BWI76_RS06190 +0.7 1.1 hypothetical protein compare
BWI76_RS21715 +0.7 2.0 transcriptional regulator compare
BWI76_RS24110 +0.7 2.0 YggU family protein compare
BWI76_RS23760 +0.7 1.5 tRNA-Gly compare
BWI76_RS19900 +0.7 2.2 FAD:protein FMN transferase compare
BWI76_RS22130 +0.7 1.5 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS16195 +0.7 1.0 hypothetical protein compare
BWI76_RS16395 +0.7 2.4 glutathione S-transferase compare
BWI76_RS12600 +0.7 2.6 MFS transporter compare
BWI76_RS06635 +0.7 1.2 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS01630 +0.7 1.2 16S ribosomal RNA compare
BWI76_RS17325 +0.7 2.3 nitrate reductase molybdenum cofactor assembly chaperone compare
BWI76_RS19795 +0.6 4.3 microcin C ABC transporter ATP-binding protein YejF compare
BWI76_RS11710 +0.6 2.2 nucleotide excision repair endonuclease compare
BWI76_RS16510 +0.6 2.7 transcriptional repressor PurR compare
BWI76_RS17330 +0.6 3.3 nitrate reductase subunit beta compare
BWI76_RS01935 +0.6 1.2 thiamin phosphate synthase compare
BWI76_RS26575 +0.6 2.8 universal stress protein B compare
BWI76_RS14005 +0.6 1.5 TetR family transcriptional regulator compare
BWI76_RS08975 +0.6 1.8 amino acid ABC transporter substrate-binding protein compare
BWI76_RS19465 +0.6 1.6 hypothetical protein compare
BWI76_RS25910 +0.6 2.9 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS21220 +0.6 2.7 membrane protein compare
BWI76_RS02655 +0.6 1.6 hypothetical protein compare
BWI76_RS16485 +0.6 1.3 ribonuclease T compare
BWI76_RS20695 +0.6 1.9 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS23520 +0.6 1.3 hypothetical protein compare
BWI76_RS06590 +0.6 4.2 multidrug ABC transporter permease/ATP-binding protein compare
BWI76_RS00025 +0.6 0.9 hypothetical protein compare
BWI76_RS09390 +0.6 1.2 phage tail protein compare
BWI76_RS25475 +0.6 5.0 TIGR02099 family protein compare
BWI76_RS13545 +0.6 1.0 N-acetyltransferase compare
BWI76_RS07695 +0.6 4.0 TonB-dependent siderophore receptor compare
BWI76_RS24950 +0.6 2.2 hypothetical protein compare
BWI76_RS04155 +0.6 3.9 membrane protein compare
BWI76_RS16370 +0.6 2.0 electron transport complex subunit D compare
BWI76_RS23670 +0.6 1.7 alkaline phosphatase compare
BWI76_RS17100 +0.6 1.8 glutathione peroxidase compare
BWI76_RS06520 +0.6 2.6 trigger factor compare
BWI76_RS22630 +0.6 2.4 LysR family transcriptional regulator compare
BWI76_RS08405 +0.6 1.3 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS19690 +0.6 1.3 LysR family transcriptional regulator compare
BWI76_RS14540 +0.6 2.3 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS17805 +0.6 1.1 membrane protein compare
BWI76_RS16275 +0.6 2.0 fumarate hydratase FumA compare
BWI76_RS09105 +0.6 2.3 glutathione ABC transporter permease GsiC compare
BWI76_RS13020 +0.6 2.1 NmrA family protein compare
BWI76_RS16015 +0.6 1.6 pheromone autoinducer 2 transporter compare
BWI76_RS11240 +0.6 1.9 spermidine/putrescine ABC transporter substrate-binding protein PotD compare
BWI76_RS21940 +0.6 1.4 SDR family oxidoreductase compare
BWI76_RS16660 +0.6 2.4 SfnB family sulfur acquisition oxidoreductase compare
BWI76_RS11040 +0.6 2.5 ribonuclease E compare
BWI76_RS14040 +0.6 1.3 thiaminase compare
BWI76_RS07470 +0.6 1.0 MBL fold metallo-hydrolase compare
BWI76_RS13950 +0.6 2.2 hypothetical protein compare
BWI76_RS09195 +0.6 1.2 N-acetyltransferase compare
BWI76_RS24920 +0.6 1.7 YraN family protein compare
BWI76_RS01855 +0.5 2.4 chorismate lyase compare
BWI76_RS13070 +0.5 2.3 hypothetical protein compare
BWI76_RS05810 +0.5 1.0 hypothetical protein compare
BWI76_RS19025 +0.5 3.9 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS18335 +0.5 3.6 DNA-binding response regulator compare
BWI76_RS15035 +0.5 1.4 metal ABC transporter permease compare
BWI76_RS11700 +0.5 1.0 hypothetical protein compare
BWI76_RS16950 +0.5 1.6 TetR family transcriptional regulator compare
BWI76_RS25660 +0.5 3.6 hypothetical protein compare
BWI76_RS14620 +0.5 1.7 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase compare
BWI76_RS09100 +0.5 3.2 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS22310 +0.5 2.1 hydrogenase 3 small subunit compare
BWI76_RS19885 +0.5 2.7 multidrug ABC transporter permease/ATP-binding protein conserved
BWI76_RS27350 +0.5 2.2 hypothetical protein compare
BWI76_RS21325 +0.5 0.9 hypothetical protein compare
BWI76_RS09320 +0.5 2.3 P2 phage tail completion protein R compare
BWI76_RS24335 +0.5 1.8 two-component system response regulator QseB compare
BWI76_RS17855 +0.5 2.8 alginate lyase compare
BWI76_RS13730 +0.5 1.4 hypothetical protein compare
BWI76_RS16805 +0.5 1.1 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS13220 +0.5 1.1 N-acetyltransferase compare
BWI76_RS24660 +0.5 2.9 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
BWI76_RS12460 +0.5 1.7 envelope stress response membrane protein PspC compare
BWI76_RS06180 +0.5 2.1 hypothetical protein compare
BWI76_RS19525 +0.5 2.1 D-alanyl-D-alanine endopeptidase compare
BWI76_RS17920 +0.5 1.9 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS01350 +0.5 0.8 NAD(P)H-flavin reductase compare
BWI76_RS19680 +0.5 2.2 catecholate siderophore receptor CirA compare
BWI76_RS00180 +0.5 1.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS08950 +0.5 2.5 Asp/Glu/hydantoin racemase compare
BWI76_RS24770 +0.5 1.5 hypothetical protein compare
BWI76_RS26130 +0.5 2.1 ADP compounds hydrolase NudE compare
BWI76_RS25980 +0.5 1.8 hypothetical protein compare
BWI76_RS20375 +0.5 0.8 membrane protein compare
BWI76_RS19470 +0.5 1.4 DNA-binding response regulator compare
BWI76_RS10900 +0.5 1.7 putative oxidoreductase compare
BWI76_RS18590 +0.5 2.6 DNA-binding response regulator compare
BWI76_RS06585 +0.5 2.8 multidrug ABC transporter permease/ATP-binding protein compare
BWI76_RS16675 +0.5 1.1 ABC transporter compare
BWI76_RS24220 +0.5 2.6 short chain dehydrogenase compare
BWI76_RS03060 +0.5 2.4 ATP-binding protein compare
BWI76_RS14610 +0.5 2.4 putative hydrolase compare
BWI76_RS07480 +0.5 3.4 TonB-dependent siderophore receptor compare
BWI76_RS09625 +0.5 1.0 hypothetical protein compare
BWI76_RS24645 +0.5 2.3 autoinducer 2 ABC transporter substrate-binding protein compare
BWI76_RS09305 +0.5 0.8 hypothetical protein compare
BWI76_RS11460 +0.5 2.0 DUF441 family protein compare
BWI76_RS18470 +0.5 1.9 hypothetical protein compare
BWI76_RS02580 +0.5 0.8 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS27760 +0.5 1.8 lactam utilization protein LamB compare
BWI76_RS15030 +0.5 1.6 ABC transporter compare
BWI76_RS10585 +0.5 1.4 amino acid ABC transporter ATP-binding protein compare
BWI76_RS12695 +0.5 2.5 zinc transporter ZntB compare
BWI76_RS16330 +0.5 1.4 oxidoreductase compare
BWI76_RS06280 +0.5 2.8 hypothetical protein compare
BWI76_RS18415 +0.5 1.8 very short patch repair endonuclease compare
BWI76_RS06805 +0.5 1.3 primosomal replication protein N'' compare
BWI76_RS04905 +0.5 2.2 DUF3300 domain-containing protein compare
BWI76_RS24465 +0.5 2.0 adenylate cyclase compare
BWI76_RS19100 +0.5 1.9 putative acid phosphatase compare
BWI76_RS09690 +0.5 1.5 dimethyl sulfoxide reductase compare
BWI76_RS08805 +0.5 1.5 gluconeogenesis factor compare
BWI76_RS07600 +0.5 2.2 aspartate aminotransferase family protein compare
BWI76_RS11125 +0.5 1.0 metal-dependent hydrolase compare
BWI76_RS16365 +0.5 2.3 electron transport complex subunit RsxC compare


Specific Phenotypes

For 3 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms