Experiment set10IT057 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS20355 -6.3 -5.0 colicin V production protein compare
BWI76_RS23920 -5.8 -5.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04160 -5.6 -7.3 phosphoserine phosphatase compare
BWI76_RS08605 -5.5 -3.7 phosphoglyceromutase compare
BWI76_RS04645 -4.9 -6.6 3-dehydroquinase compare
BWI76_RS18130 -4.7 -3.7 zinc ABC transporter substrate-binding protein compare
BWI76_RS09660 -4.6 -3.2 DNA translocase FtsK compare
BWI76_RS09755 -4.6 -6.8 phosphoserine transaminase compare
BWI76_RS07070 -4.6 -5.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS25335 -4.5 -3.3 stringent starvation protein A compare
BWI76_RS09760 -4.4 -8.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04470 -4.3 -10.6 carbamoyl phosphate synthase large subunit compare
BWI76_RS26085 -4.2 -3.5 3-dehydroquinate synthase compare
BWI76_RS25115 -4.2 -8.4 argininosuccinate synthase compare
BWI76_RS18940 -4.2 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS20895 -4.1 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04250 -4.0 -7.5 homoserine kinase compare
BWI76_RS25215 -4.0 -7.0 phospholipid-binding protein MlaC compare
BWI76_RS24400 -4.0 -7.1 outer membrane channel protein TolC compare
BWI76_RS20350 -4.0 -5.8 amidophosphoribosyltransferase compare
BWI76_RS01210 -3.9 -6.0 tyrosine recombinase XerC compare
BWI76_RS18950 -3.8 -6.3 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS21265 -3.8 -13.1 phosphoribosylformylglycinamidine synthase compare
BWI76_RS23240 -3.8 -5.2 exonuclease V subunit gamma compare
BWI76_RS23360 -3.8 -4.0 diaminopimelate decarboxylase compare
BWI76_RS25230 -3.7 -8.3 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS01615 -3.7 -9.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS04465 -3.6 -5.2 carbamoyl-phosphate synthase small subunit compare
BWI76_RS09970 -3.6 -6.5 porin OmpA compare
BWI76_RS26460 -3.6 -4.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS18925 -3.6 -6.7 histidinol dehydrogenase compare
BWI76_RS01610 -3.6 -6.2 phosphoribosylamine--glycine ligase compare
BWI76_RS04305 -3.6 -1.4 molecular chaperone DnaJ compare
BWI76_RS04255 -3.6 -10.7 threonine synthase compare
BWI76_RS03010 -3.6 -11.1 ornithine carbamoyltransferase compare
BWI76_RS18935 -3.5 -6.2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS20965 -3.5 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS00805 -3.5 -5.0 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS00345 -3.4 -3.3 protein disulfide oxidoreductase DsbA compare
BWI76_RS04240 -3.4 -2.0 thr operon leader peptide compare
BWI76_RS18930 -3.4 -4.2 histidinol-phosphate transaminase compare
BWI76_RS07065 -3.4 -7.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS14935 -3.3 -1.9 NIPSNAP family containing protein compare
BWI76_RS04715 -3.3 -3.1 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS05840 -3.3 -6.1 glutamate 5-kinase compare
BWI76_RS00975 -3.3 -11.4 dihydroxy-acid dehydratase compare
BWI76_RS00835 -3.3 -10.8 phosphoenolpyruvate carboxylase compare
BWI76_RS26570 -3.2 -3.8 anion permease compare
BWI76_RS00855 -3.2 -10.0 argininosuccinate lyase compare
BWI76_RS25225 -3.2 -8.8 ABC transporter permease compare
BWI76_RS21580 -3.2 -2.4 SsrA-binding protein compare
BWI76_RS27310 -3.1 -10.4 glycosyltransferase compare
BWI76_RS20435 -3.1 -1.6 chorismate synthase compare
BWI76_RS02580 -3.1 -2.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS18920 -3.1 -4.0 ATP phosphoribosyltransferase compare
BWI76_RS23365 -3.0 -5.2 LysR family transcriptional regulator compare
BWI76_RS23230 -3.0 -4.9 exodeoxyribonuclease V subunit beta compare
BWI76_RS02410 -3.0 -2.0 EF-P beta-lysylation protein EpmB compare
BWI76_RS11965 -3.0 -6.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS21475 -2.9 -4.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS06775 -2.9 -13.6 multidrug efflux RND transporter permease subunit compare
BWI76_RS06780 -2.9 -7.5 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS00400 -2.9 -1.9 glutamine synthetase compare
BWI76_RS00850 -2.9 -8.8 acetylglutamate kinase compare
BWI76_RS19805 -2.9 -4.5 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS23220 -2.8 -9.4 amino-acid N-acetyltransferase compare
BWI76_RS11170 -2.8 -1.9 hypothetical protein compare
BWI76_RS26455 -2.8 -3.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS18140 -2.6 -5.6 zinc ABC transporter permease compare
BWI76_RS15825 -2.6 -3.6 hypothetical protein compare
BWI76_RS09655 -2.6 -4.0 leucine-responsive regulatory protein compare
BWI76_RS04245 -2.6 -11.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS08495 -2.5 -7.3 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS18135 -2.5 -6.6 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS04665 -2.5 -16.0 3-isopropylmalate dehydratase small subunit compare
BWI76_RS20475 -2.5 -6.0 phospholipid-binding lipoprotein MlaA compare
BWI76_RS02995 -2.5 -9.4 aspartate carbamoyltransferase compare
BWI76_RS04670 -2.5 -9.9 3-isopropylmalate dehydratase large subunit compare
BWI76_RS23930 -2.5 -8.3 transcriptional regulator ArgP compare
BWI76_RS26200 -2.4 -8.6 starch synthase compare
BWI76_RS04685 -2.4 -7.5 putative leucine operon leader peptide compare
BWI76_RS09640 -2.4 -4.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS23480 -2.4 -11.7 EAL domain-containing protein compare
BWI76_RS07740 -2.3 -2.2 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS18955 -2.3 -6.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS25645 -2.3 -6.2 shikimate dehydrogenase compare
BWI76_RS01330 -2.3 -4.2 twin-arginine translocase subunit TatC compare
BWI76_RS00845 -2.2 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS26665 -2.2 -3.8 DNA-binding response regulator compare
BWI76_RS21165 -2.2 -1.9 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS27305 -2.2 -6.1 glycosyl transferase compare
BWI76_RS04955 -2.2 -2.4 hypoxanthine phosphoribosyltransferase compare
BWI76_RS27430 -2.2 -1.6 (p)ppGpp synthetase compare
BWI76_RS21000 -2.1 -6.8 exopolyphosphatase compare
BWI76_RS09635 -2.1 -3.1 amino acid ABC transporter ATP-binding protein compare
BWI76_RS24280 -2.1 -5.4 biopolymer transporter ExbB compare
BWI76_RS16990 -2.1 -3.9 ABC transporter ATP-binding protein compare
BWI76_RS08385 -2.1 -3.6 citrate (Si)-synthase compare
BWI76_RS05200 -2.1 -2.8 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS26390 -2.0 -5.0 cell division protein FtsX compare
BWI76_RS05015 -2.0 -3.3 transcriptional regulator compare
BWI76_RS01325 -2.0 -2.4 twin-arginine translocase subunit TatB compare
BWI76_RS22095 -2.0 -3.4 multidrug export protein EmrA compare
BWI76_RS19010 -2.0 -3.8 polysaccharide pyruvyl transferase yvff compare
BWI76_RS15605 -2.0 -2.7 hypothetical protein compare
BWI76_RS00990 -1.9 -8.5 ketol-acid reductoisomerase compare
BWI76_RS06770 -1.9 -8.8 Hha toxicity attenuator compare
BWI76_RS04530 -1.9 -2.5 peptidylprolyl isomerase SurA compare
BWI76_RS18360 -1.9 -1.6 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS00965 -1.9 -1.2 acetolactate synthase 2 small subunit compare
BWI76_RS05135 -1.9 -3.5 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS17000 -1.9 -4.6 Fe-S cluster assembly scaffold SufA compare
BWI76_RS11610 -1.8 -2.5 glutamate dehydrogenase compare
BWI76_RS09870 -1.8 -6.6 aromatic amino acid aminotransferase compare
BWI76_RS12950 -1.8 -5.2 acriflavin resistance protein AcrA compare
BWI76_RS17720 -1.8 -1.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS05175 -1.8 -12.1 dGTPase compare
BWI76_RS11860 -1.8 -5.1 anthranilate synthase component I compare
BWI76_RS05835 -1.8 -2.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS04675 -1.8 -3.3 3-isopropylmalate dehydrogenase compare
BWI76_RS04680 -1.8 -8.5 2-isopropylmalate synthase compare
BWI76_RS05140 -1.8 -3.2 Fe3+-hydroxamate ABC transporter permease FhuB conserved
BWI76_RS06765 -1.8 -3.7 transcriptional regulator compare
BWI76_RS20650 -1.7 -1.2 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS00980 -1.7 -7.4 PLP-dependent threonine dehydratase compare
BWI76_RS14770 -1.7 -1.7 PTS IIA 2 domain protein compare
BWI76_RS12955 -1.7 -10.5 multidrug efflux RND transporter permease subunit OqxB compare
BWI76_RS11845 -1.7 -3.2 tryptophan synthase subunit beta compare
BWI76_RS08535 -1.7 -2.3 translocation protein TolB compare
BWI76_RS08500 -1.7 -4.2 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS01795 -1.7 -3.7 hypothetical protein compare
BWI76_RS16995 -1.6 -6.6 Fe-S cluster assembly protein SufB compare
BWI76_RS01790 -1.6 -8.1 lysine-sensitive aspartokinase 3 compare
BWI76_RS00720 -1.6 -2.2 DNA-binding response regulator compare
BWI76_RS06740 -1.6 -2.0 50S ribosomal protein L36 compare
BWI76_RS06465 -1.6 -2.1 IclR family transcriptional regulator compare
BWI76_RS18385 -1.6 -1.4 hypothetical protein compare
BWI76_RS17400 -1.6 -1.5 transporter compare
BWI76_RS21480 -1.6 -8.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS11850 -1.6 -7.5 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS15115 -1.6 -7.1 MFS transporter compare
BWI76_RS26670 -1.6 -4.0 two-component sensor histidine kinase compare
BWI76_RS09650 -1.6 -5.0 hypothetical protein compare
BWI76_RS23265 -1.6 -1.8 hypothetical protein compare
BWI76_RS05260 -1.6 -1.6 chaperone compare
BWI76_RS14615 -1.6 -1.5 hypothetical protein compare
BWI76_RS19685 -1.6 -5.0 lysine transporter compare
BWI76_RS15845 -1.6 -1.2 hypothetical protein compare
BWI76_RS15680 -1.6 -2.1 hypothetical protein compare
BWI76_RS25505 -1.6 -7.4 RNase E specificity factor CsrD compare
BWI76_RS18165 -1.5 -1.5 NUDIX pyrophosphatase compare
BWI76_RS19935 -1.5 -1.9 hypothetical protein compare
BWI76_RS26075 -1.5 -3.1 DNA adenine methylase compare
BWI76_RS26620 -1.5 -1.2 Fe-S biogenesis protein NfuA compare
BWI76_RS21465 -1.5 -2.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS16980 -1.5 -4.0 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS06295 -1.5 -5.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS24600 -1.5 -4.0 dihydroxyacetone kinase compare
BWI76_RS15110 -1.5 -9.5 putative excinuclease ABC subunit A compare
BWI76_RS21070 -1.5 -2.3 outer membrane protein assembly factor BamB compare
BWI76_RS06185 -1.5 -5.8 shikimate kinase II compare
BWI76_RS01925 -1.5 -6.9 aromatic amino acid aminotransferase compare
BWI76_RS10470 -1.5 -6.4 iron ABC transporter substrate-binding protein compare
BWI76_RS20900 -1.5 -1.2 outer membrane protein assembly factor BamC compare
BWI76_RS27680 -1.5 -4.9 TetR family transcriptional regulator compare
BWI76_RS25220 -1.5 -1.2 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS12090 -1.5 -2.2 HNH endonuclease compare
BWI76_RS00875 -1.5 -3.9 DNA-binding transcriptional regulator FabR compare
BWI76_RS24275 -1.5 -2.9 biopolymer transport protein ExbD compare
BWI76_RS08525 -1.4 -4.5 colicin transporter compare
BWI76_RS01060 -1.4 -7.6 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase compare
BWI76_RS21140 -1.4 -2.2 molecular chaperone HscA compare
BWI76_RS20795 -1.4 -1.3 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS16975 -1.4 -4.2 cysteine desufuration protein SufE compare
BWI76_RS21350 -1.4 -1.8 anti-RNA polymerase sigma factor SigE compare
BWI76_RS17190 -1.4 -2.4 TonB system transport protein TonB compare
BWI76_RS12045 -1.4 -2.4 hypothetical protein compare
BWI76_RS11840 -1.4 -2.4 tryptophan synthase subunit alpha compare
BWI76_RS06335 -1.4 -1.6 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS00760 -1.4 -3.5 cell division protein FtsN compare
BWI76_RS25205 -1.4 -2.3 hypothetical protein compare
BWI76_RS27875 -1.4 -1.4 membrane protein compare
BWI76_RS11275 -1.3 -4.2 sensor protein PhoQ compare
BWI76_RS17290 -1.3 -3.3 formyltetrahydrofolate deformylase compare
BWI76_RS06240 -1.3 -4.8 branched-chain amino acid transport system 2 carrier protein BrnQ compare
BWI76_RS06800 -1.3 -1.1 DUF2496 domain-containing protein compare
BWI76_RS10475 -1.3 -3.1 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS26590 -1.3 -3.2 transcriptional regulator compare
BWI76_RS01995 -1.3 -1.2 AraC family transcriptional regulator compare
BWI76_RS19905 -1.3 -4.3 OmpK36 porin compare
BWI76_RS08980 -1.3 -1.3 DNA starvation/stationary phase protection protein compare
BWI76_RS19850 -1.3 -1.8 tRNA-Pro compare
BWI76_RS05125 -1.3 -6.5 ferrichrome porin FhuA compare
BWI76_RS06680 -1.3 -1.0 hypothetical protein compare
BWI76_RS15660 -1.3 -1.3 hypothetical protein compare
BWI76_RS09190 -1.3 -2.8 hypothetical protein compare
BWI76_RS24960 -1.3 -3.9 N-acetyltransferase compare
BWI76_RS00355 -1.2 -2.6 DNA polymerase I compare
BWI76_RS09325 -1.2 -3.1 putative bacteriophage tail completion protein compare
BWI76_RS05045 -1.2 -2.6 general secretion pathway protein GspM compare


Specific Phenotypes

For 12 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms