Experiment set10IT057 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium adipate carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS22495 +7.5 29.4 hypothetical protein compare
RR42_RS36125 +7.4 54.4 IclR family transcriptional regulator compare
RR42_RS22490 +7.3 41.0 IclR family transcriptional regulator compare
RR42_RS29865 +7.0 32.6 hypothetical protein compare
RR42_RS07605 +6.3 24.8 poly-beta-hydroxybutyrate polymerase compare
RR42_RS17565 +6.1 50.4 LysR family transcriptional regulator compare
RR42_RS35920 +5.1 9.6 3-oxoadipate CoA-transferase compare
RR42_RS26840 +4.1 21.6 DNA-binding protein compare
RR42_RS24520 +3.7 6.5 hypothetical protein compare
RR42_RS21255 +3.6 5.4 LysR family transcriptional regulator compare
RR42_RS29970 +3.6 12.3 IclR family transcriptional regulator compare
RR42_RS02500 +3.3 6.0 TetR family transcriptional regulator compare
RR42_RS14070 +3.3 22.6 sugar dehydratase compare
RR42_RS07615 +3.2 9.9 3-ketoacyl-ACP reductase compare
RR42_RS14075 +3.1 16.4 anti-sigma factor compare
RR42_RS11095 +2.8 20.0 3-hydroxyacyl-CoA dehydrogenase compare
RR42_RS31160 +2.5 12.3 IclR family transcriptional regulator compare
RR42_RS15740 +2.4 2.9 hypothetical protein compare
RR42_RS27395 +2.3 7.2 GntR family transcriptional regulator compare
RR42_RS05600 +2.3 6.3 acyl-CoA dehydrogenase compare
RR42_RS05595 +2.3 8.5 acyl-CoA dehydrogenase compare
RR42_RS21000 +2.2 3.7 glycosyl transferase compare
RR42_RS35910 +2.1 2.9 short-chain dehydrogenase compare
RR42_RS08945 +2.1 2.2 hypothetical protein compare
RR42_RS36595 +2.0 7.7 acyl-CoA dehydrogenase compare
RR42_RS07610 +1.9 4.8 acetyl-CoA acetyltransferase compare
RR42_RS15155 +1.9 14.0 CoA-transferase compare
RR42_RS17355 +1.8 1.3 hypothetical protein compare
RR42_RS33195 +1.8 11.6 UDP-sugar lipid carrier transferase compare
RR42_RS01785 +1.8 5.9 PTS fructose transporter subunit IIA compare
RR42_RS24355 +1.8 2.9 hypothetical protein compare
RR42_RS35930 +1.8 2.3 DNA repair exonuclease compare
RR42_RS21040 +1.8 1.4 hypothetical protein compare
RR42_RS15755 +1.8 3.9 acetyltransferase compare
RR42_RS21150 +1.8 3.4 hypothetical protein compare
RR42_RS26540 +1.7 2.0 3-phosphoglycerate dehydrogenase compare
RR42_RS19750 +1.7 1.8 MBL fold metallo-hydrolase compare
RR42_RS30735 +1.6 2.7 tRNA-Met compare
RR42_RS02080 +1.6 10.9 ribosome hibernation promoting factor compare
RR42_RS06000 +1.6 2.3 antibiotic biosynthesis monooxygenase compare
RR42_RS29410 +1.6 7.6 acetyl-CoA carboxylase compare
RR42_RS35925 +1.6 2.3 3-oxoadipate CoA-transferase compare
RR42_RS24350 +1.5 5.2 malyl-CoA thiolesterase compare
RR42_RS14065 +1.5 10.6 serine peptidase compare
RR42_RS03370 +1.5 3.0 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS21955 +1.5 1.9 hypothetical protein compare
RR42_RS32445 +1.5 3.5 shikimate dehydrogenase compare
RR42_RS37005 +1.5 2.1 IclR family transcriptional regulator compare
RR42_RS31710 +1.4 8.5 HxlR family transcriptional regulator compare
RR42_RS21260 +1.4 5.4 isovaleryl-CoA dehydrogenase compare
RR42_RS12860 +1.4 2.4 pseudouridine synthase compare
RR42_RS15800 +1.4 4.0 aldo/keto reductase compare
RR42_RS36635 +1.4 4.0 long-chain fatty acid--CoA ligase compare
RR42_RS29065 +1.3 2.9 NADPH:quinone reductase compare
RR42_RS10010 +1.3 1.7 3-oxoadipate CoA-transferase compare
RR42_RS04770 +1.3 1.5 methylglyoxal synthase compare
RR42_RS14355 +1.3 5.2 DNA methylase N-4 compare
RR42_RS24505 +1.3 4.3 hypothetical protein compare
RR42_RS01630 +1.3 1.0 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS33600 +1.3 1.6 oxidoreductase compare
RR42_RS32085 +1.2 1.3 hypothetical protein compare
RR42_RS10005 +1.2 4.5 3-oxoadipate CoA-transferase compare
RR42_RS00655 +1.2 1.8 membrane protein compare
RR42_RS34535 +1.2 2.0 membrane protein compare
RR42_RS32960 +1.2 3.4 2-dehydropantoate 2-reductase compare
RR42_RS36640 +1.2 3.6 ABC transporter substrate-binding protein compare
RR42_RS01820 +1.2 4.8 peptidase S41 compare
RR42_RS27405 +1.2 4.3 aminotransferase compare
RR42_RS28695 +1.2 1.4 hypothetical protein compare
RR42_RS23880 +1.2 2.0 hypothetical protein compare
RR42_RS22485 +1.2 4.5 MBL fold metallo-hydrolase compare
RR42_RS12660 +1.2 4.4 hypothetical protein compare
RR42_RS02900 +1.1 4.3 LysR family transcriptional regulator compare
RR42_RS13125 +1.1 4.0 pyrrolo-quinoline quinone compare
RR42_RS13375 +1.1 4.7 peptide ABC transporter permease compare
RR42_RS26430 +1.1 3.0 ferredoxin reductase compare
RR42_RS22135 +1.1 3.0 cytochrome C compare
RR42_RS15015 +1.1 0.9 exodeoxyribonuclease VII small subunit compare
RR42_RS15790 +1.1 5.4 aminotransferase class III compare
RR42_RS20855 +1.1 3.3 cold-shock protein compare
RR42_RS18475 +1.1 3.2 membrane protein compare
RR42_RS04420 +1.1 2.5 required for efflux of an amino acid polymer (from data) compare
RR42_RS04260 +1.1 4.5 chemotaxis protein compare
RR42_RS02850 +1.1 2.7 phoH-like protein compare
RR42_RS16360 +1.1 1.7 transposase compare
RR42_RS34460 +1.1 4.8 GDP-L-fucose synthase compare
RR42_RS33215 +1.1 7.5 transferase compare
RR42_RS33180 +1.1 5.1 hypothetical protein compare
RR42_RS32670 +1.1 1.3 phenol hydroxylase compare
RR42_RS07310 +1.1 4.6 hypothetical protein compare
RR42_RS31120 +1.1 3.8 cupin compare
RR42_RS05590 +1.1 2.0 hypothetical protein compare
RR42_RS03525 +1.1 1.7 type VI secretion system effector compare
RR42_RS00430 +1.0 2.5 histidine kinase compare
RR42_RS13380 +1.0 5.2 microcin ABC transporter permease compare
RR42_RS36335 +1.0 2.4 enoyl-CoA hydratase compare
RR42_RS23565 +1.0 0.8 flagellar motor switch protein G compare
RR42_RS13850 +1.0 1.9 hypothetical protein compare
RR42_RS27120 +1.0 1.2 amino acid ABC transporter permease compare
RR42_RS27400 +1.0 3.2 membrane protein compare
RR42_RS07130 +1.0 2.1 hypothetical protein compare
RR42_RS36645 +1.0 4.8 acyl-CoA dehydrogenase compare
RR42_RS05620 +1.0 1.8 esterase compare
RR42_RS16930 +1.0 2.7 sulfonate ABC transporter ATP-binding protein compare
RR42_RS35805 +1.0 3.0 chemotaxis protein CheA compare
RR42_RS10675 +1.0 1.6 hypothetical protein compare
RR42_RS17560 +1.0 6.1 Fur family transcriptional regulator compare
RR42_RS13465 +1.0 2.7 phosphate transporter permease subunit PstC compare
RR42_RS16910 +1.0 1.4 histidine utilization protein HutD compare
RR42_RS25965 +1.0 2.3 LuxR family transcriptional regulator compare
RR42_RS12085 +1.0 2.3 glyoxalase compare
RR42_RS35940 +1.0 3.8 ABC transporter substrate-binding protein compare
RR42_RS00955 +1.0 4.0 hydroxymethylglutaryl-CoA lyase compare
RR42_RS08590 +1.0 1.0 baseplate assembly protein compare
RR42_RS07515 +1.0 4.6 transcriptional regulator compare
RR42_RS05725 +1.0 3.8 hypothetical protein compare
RR42_RS06095 +1.0 3.6 hypothetical protein compare
RR42_RS28155 +1.0 3.1 hypothetical protein compare
RR42_RS20440 +1.0 1.4 histidine kinase compare
RR42_RS34340 +1.0 2.4 acetyltransferase compare
RR42_RS33205 +1.0 6.2 UDP-glucose 6-dehydrogenase compare
RR42_RS30285 +1.0 2.2 amidohydrolase compare
RR42_RS35900 +1.0 5.3 hypothetical protein compare
RR42_RS20320 +1.0 1.9 ornithine cyclodeaminase compare
RR42_RS26130 +0.9 2.1 C4-dicarboxylate ABC transporter compare
RR42_RS29420 +0.9 4.7 3-methylcrotonyl-CoA carboxylase compare
RR42_RS06415 +0.9 2.2 glyoxalase compare
RR42_RS34480 +0.9 5.1 mannose-1-phosphate guanyltransferase compare
RR42_RS35945 +0.9 5.7 DNA-binding protein compare
RR42_RS06345 +0.9 2.4 hypothetical protein compare
RR42_RS06120 +0.9 2.5 transcriptional regulator compare
RR42_RS23920 +0.9 2.4 hypothetical protein compare
RR42_RS00805 +0.9 1.9 membrane protein compare
RR42_RS19745 +0.9 2.8 RlpA-like protein compare
RR42_RS31735 +0.9 2.5 ABC transporter ATP-binding protein compare
RR42_RS08000 +0.9 0.9 hypothetical protein compare
RR42_RS29230 +0.9 4.7 TetR family transcriptional regulator compare
RR42_RS34175 +0.9 1.5 enoyl-CoA hydratase compare
RR42_RS35140 +0.9 1.8 2-hydroxylaminobenzoate mutase compare
RR42_RS35250 +0.9 1.7 alpha/beta hydrolase compare
RR42_RS05230 +0.9 2.1 LysR family transcriptional regulator compare
RR42_RS11230 +0.9 2.6 peptide ABC transporter ATP-binding protein compare
RR42_RS17425 +0.9 4.5 chemotaxis protein CheY compare
RR42_RS14480 +0.9 2.4 hypothetical protein compare
RR42_RS19860 +0.9 1.2 tartronate semialdehyde reductase compare
RR42_RS11655 +0.9 0.9 heat-shock protein Hsp20 compare
RR42_RS12550 +0.9 1.6 hypothetical protein compare
RR42_RS11235 +0.9 2.1 peptide ABC transporter substrate-binding protein compare
RR42_RS32235 +0.9 4.6 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS12610 +0.9 1.7 glutaminase compare
RR42_RS35935 +0.9 3.2 exonuclease SbcD compare
RR42_RS22030 +0.9 2.2 hypothetical protein compare
RR42_RS13540 +0.9 3.3 acyl-CoA dehydrogenase compare
RR42_RS22345 +0.9 2.7 UDP-N-acetylmuramate--alanine ligase compare
RR42_RS15795 +0.9 2.7 spore coat protein compare
RR42_RS01405 +0.9 6.9 lytic transglycosylase compare
RR42_RS11635 +0.8 2.7 signal transduction protein compare
RR42_RS00725 +0.8 3.3 hypothetical protein compare
RR42_RS02470 +0.8 1.1 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS13065 +0.8 4.8 ribonuclease R compare
RR42_RS34935 +0.8 1.3 cytochrome C oxidase subunit IV compare
RR42_RS00370 +0.8 3.6 Asp/Glu/hydantoin racemase compare
RR42_RS21720 +0.8 1.4 acetoin catabolism protein X compare
RR42_RS24500 +0.8 2.1 hypothetical protein compare
RR42_RS15050 +0.8 4.2 DNA polymerase I compare
RR42_RS09565 +0.8 1.5 hypothetical protein compare
RR42_RS31950 +0.8 3.5 ketoacid CoA transferase compare
RR42_RS07255 +0.8 1.9 hypothetical protein compare
RR42_RS08620 +0.8 1.6 membrane protein compare
RR42_RS19075 +0.8 3.6 lipoprotein compare
RR42_RS28920 +0.8 1.2 hypothetical protein compare
RR42_RS32965 +0.8 2.0 salicylaldehyde dehydrogenase compare
RR42_RS17385 +0.8 5.3 LysR family transcriptional regulator compare
RR42_RS15525 +0.8 0.8 hypothetical protein compare
RR42_RS15985 +0.8 2.6 formate dehydrogenase compare
RR42_RS12505 +0.8 4.0 TetR family transcriptional regulator compare
RR42_RS26725 +0.8 2.0 diguanylate cyclase compare
RR42_RS33690 +0.8 1.5 phosphate acetyltransferase compare
RR42_RS16495 +0.8 1.9 branched-chain amino acid aminotransferase compare
RR42_RS07525 +0.8 2.2 alpha/beta hydrolase compare
RR42_RS34945 +0.8 1.4 bb3-type cytochrome oxidase subunit III compare
RR42_RS15905 +0.8 4.1 phosphoenolpyruvate carboxylase compare
RR42_RS14015 +0.8 4.4 beta-hexosaminidase compare
RR42_RS19635 +0.8 1.1 hypothetical protein compare
RR42_RS15705 +0.8 2.7 glycosyl transferase family 1 compare
RR42_RS00385 +0.8 1.4 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
RR42_RS04060 +0.8 2.0 hypothetical protein compare
RR42_RS35975 +0.8 2.1 pilus assembly protein TadC compare
RR42_RS05425 +0.8 2.8 membrane protein compare
RR42_RS07735 +0.8 1.8 histidine kinase compare
RR42_RS24915 +0.8 2.9 hypothetical protein compare
RR42_RS36450 +0.8 0.8 acyl dehydratase compare
RR42_RS04250 +0.8 1.6 chemotaxis protein CheY compare
RR42_RS04415 +0.8 3.4 ABC transporter compare
RR42_RS03940 +0.8 0.6 membrane protein compare
RR42_RS35080 +0.8 5.1 membrane protein compare
RR42_RS19785 +0.8 2.6 allantoate amidohydrolase compare
RR42_RS34395 +0.8 1.0 hypothetical protein compare
RR42_RS09300 +0.8 1.2 aromatic ring-opening dioxygenase LigB compare
RR42_RS19445 +0.8 3.7 TetR family transcriptional regulator compare


Specific Phenotypes

For 35 genes in this experiment

For carbon source Sodium adipate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium adipate across organisms