Experiment set10IT056 for Paraburkholderia bryophila 376MFSha3.1

Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Group: in planta
Media: + Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Culturing: Burk376_ML3_Marta, pot, at 26 (C), (Solid)
By: Marta on 25-Mar-22

Specific Phenotypes

For 9 genes in this experiment

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days in Paraburkholderia bryophila 376MFSha3.1

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days across organisms

SEED Subsystems

Subsystem	#Specific
Choline and Betaine Uptake and Betaine Biosynthesis	1
Cyanobacterial Circadian Clock	1
Heat shock dnaK gene cluster extended	1
Heme and Siroheme Biosynthesis	1
Histidine Degradation	1
Queuosine-Archaeosine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycine, serine and threonine metabolism
• Porphyrin and chlorophyll metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
superoxide radicals degradation	2	2	1
reactive oxygen species degradation	4	4	1
creatinine degradation I	4	1	1
creatinine degradation II	5	1	1
ethene biosynthesis III (microbes)	7	6	1
glycine betaine degradation I	8	6	1